Clone AT13385 Report

Search the DGRC for AT13385

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:133
Well:85
Vector:pOTB7
Associated Gene/Transcriptcola-RA
Protein status:AT13385.pep: gold
Sequenced Size:2122

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG30363 2003-01-01 Sim4 clustering to Release 3
CG30366 2008-04-29 Release 5.5 accounting
CG30366 2008-08-15 Release 5.9 accounting
CG30363 2008-08-15 Release 5.9 accounting
CG30366 2008-12-18 5.12 accounting
CG30363 2008-12-18 5.12 accounting

Clone Sequence Records

AT13385.complete Sequence

2122 bp (2122 high quality bases) assembled on 2005-10-06

GenBank Submission: BT023913.1

> AT13385.complete
CTTCACCCTTTCGGCTAACGCCTCTCTAAATTAGATATTCAAAAAAGGCA
GGCACCATGATCACCTCGAAGCTGCGCCTGCGCCGAGCACAGATTCCCAG
GTTTTCGATCACGAGTCGATGGTACAATTGGGGCAGCTACGATGCCAGCT
CTGGGGAGTGCTGCAAGATGCGCGACAAGGATACCACGGCCTGCAAGGAT
GGAAAGTGGTTCTGTCCGGTCAAGTACGAGCCCAACAAGTGTTACGAGAA
ACCATCCTTTGCAGTAGAAGAATACTCCCAGTATCTGCAGGAGATCTATA
ATCGAGGCAAGACCAATCCCGACTGCTTGCTGAAGCTGATCCGCCACGAC
GCTGAACATTACAAGCCGTCAGATAAGCAGCGCAAATTCCAAAGGACTTG
GCCAGAGTGTCCGCTCCTCTGGCTACGACCAAAGGACTATTGCTGTCCCG
ATCAGGAGGTATATCAGCCCATGAATCGTCGCATCCGCCCCCCGCAGGAA
CCACCACTTTCGGCTATTGAAAAGCACCTCTTCCAGATGAGTATCTTTTG
CAAGTCCGTCAGGGCTCCCTGTTGTAAAGTAGGTCGACGTCCGCCCAAAT
GCACCAAGCCGCGGAGGCCATCCGAATGCTGCAAGAAGTTCACTCCGATG
CCTAGTTTTTCGGAGGCCTGCCGCCATCTGATACCACGATTCTGTGGCTC
CGAGTGTGCCTGTCGTGGAGGGAGCTTATGTGAAATGTGGAACACGTATA
ATATGTGCAACAAGTCGCGCAGGAACTGCACCAAGCCGTTAATAGGGTAT
TCTCCGTTACGATCCAGGATGCGATTTCCATTTTGAGAGATTCCTAAGTG
TGCAGTCGTCTGATTTATTTAGAGGTTCTTCAACAAAGAGTATGCGGAAG
TAACCTAACCAGTGACCTAGTTTTCCCGGCCTAGTAACTCACAAGTTCGA
CAGCTTTCGAAAAATCATTAGGCCAAATCAAAATTCTCAAAATTTTAAGC
ATGCAGTCAGCACTGTGGATCTTTTGCAGACAAGGTTTCAGGAGCTTTGC
CACTAAAGCGCAAGGTTTCAGAAGCTTCGCCAGCAAAGTGACCTACCACG
CGGATCCGCCATGCCAACCTGTCGACCCTTTGTGCCATCATGTTCCAAGC
GGCAGATGCGTGCAGGCCAGGGAAACGATCAATCTCAAACTGCCACATGA
GAGGTTATTGAAGCAAGAACGCGATCAGAAGAAGGAGAGGAAATGCTGTG
TCCTGCGATCGGCGGCCAAAAATCCCTGCGTAGAGATAAGACGACCCAAA
GCCGCAAAGCTGGAGGAGAAGCCATTCCGTTCGATGTGGGAGCCACCTTG
CAAGGCGAACGAGCAGCCGTTCTGCAAGGAAATGCTGCCCCGCTTCGATG
CGATGTACTACCATCCCTCAAACAAGTGCCGCTGCTACCAACGCACCTGG
GTGGAGTGTTCACCCGTTAAGAAACGGCTGAAGAAGGTTTGCTGCCTGGA
CGCCATCGAACCTCCTGAGATTCTGTACCGGATCAGGCCGCCCTGCCCAG
GAACTTGCCAAATCAACTATAAGGCTCGAAGGCTACTCTGTGCGGATGGA
GAATGGGAGCGGGACCCAACGAGGAAGTGTCCGAAATTCTTTCACCCCTG
TTGCAAGCTGGCTCGCTGCAATCCTCGTTGCTCCAGAGGCAGAAAGCCTA
CCCTATGCACCAAGTTGCGAGCTCCATATCCTTGTTACTCAGAAAAAATA
AGAGGAACAAGACCGCTCCGAAAAAGAGAGTGCCTTTGCTTGGAGACCAC
CCCGAAATGTATAGCTCTTGCGGAAAGAATGAGACGCGATGGATTAAATC
TGTGATAATCCTACCGAAACACGTAAAAGTGCAAGTTGAGGGTCTGGCTT
TTAAAACGAAGTAATAGATACAAAGTGATGTTTCTATTAATTTGCTTTAG
CAGTCAGGTATCCGATCCTAACAAAAAACCATGGAAATTACTTAATAATA
ACAATTTGGCATACAAAATTTATAATTGAATTTATGAGTTGTAATAAAAC
ATATAATAAAAATTCATTAAATTTAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAA

AT13385.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
cola-RA 2075 cola-RA 1..2075 1..2075 10330 99.8 Plus
swif-RB 2075 swif-RB 1..2075 1..2075 10330 99.8 Plus
swif-RA 1021 swif-RA 1..1021 958..1978 5105 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:44:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4250795..4252871 2074..1 10165 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:47:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:44:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8363271..8365345 2075..1 10330 99.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:19:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 8364470..8366544 2075..1 10330 99.8 Minus
3R 31820162 3R 22625666..22625726 2053..2113 215 90.1 Plus
Blast to na_te.dros performed 2019-03-16 21:44:45
Subject Length Description Subject Range Query Range Score Percent Strand
412 7567 412 412 7567bp 1753..1854 1974..2074 146 65.4 Plus

AT13385.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:45:31 Download gff for AT13385.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4250832..4252871 1..2038 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:03:54 Download gff for AT13385.complete
Subject Subject Range Query Range Percent Splice Strand
CG30366-RB 1..855 1001..1855 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:49:55 Download gff for AT13385.complete
Subject Subject Range Query Range Percent Splice Strand
swif-RB 1..855 1001..1855 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:01:56 Download gff for AT13385.complete
Subject Subject Range Query Range Percent Splice Strand
swif-RA 1..855 1001..1855 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:30:43 Download gff for AT13385.complete
Subject Subject Range Query Range Percent Splice Strand
CG30366-RB 1..855 1001..1855 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:30:50 Download gff for AT13385.complete
Subject Subject Range Query Range Percent Splice Strand
swif-RA 1..855 1001..1855 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-27 15:32:31 Download gff for AT13385.complete
Subject Subject Range Query Range Percent Splice Strand
CG30366-RB 1..2074 1..2074 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:49:55 Download gff for AT13385.complete
Subject Subject Range Query Range Percent Splice Strand
swif-RB 1..2074 1..2074 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:01:56 Download gff for AT13385.complete
Subject Subject Range Query Range Percent Splice Strand
swif-RB 1..2074 1..2074 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:30:43 Download gff for AT13385.complete
Subject Subject Range Query Range Percent Splice Strand
CG30366-RB 1..2074 1..2074 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:30:50 Download gff for AT13385.complete
Subject Subject Range Query Range Percent Splice Strand
cola-RA 1..2074 1..2074 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:45:31 Download gff for AT13385.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8363272..8365345 1..2074 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:45:31 Download gff for AT13385.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8363272..8365345 1..2074 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:45:31 Download gff for AT13385.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8363272..8365345 1..2074 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:01:56 Download gff for AT13385.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4250777..4252850 1..2074 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:09:05 Download gff for AT13385.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8364471..8366544 1..2074 99   Minus

AT13385.pep Sequence

Translation from 56 to 835

> AT13385.pep
MITSKLRLRRAQIPRFSITSRWYNWGSYDASSGECCKMRDKDTTACKDGK
WFCPVKYEPNKCYEKPSFAVEEYSQYLQEIYNRGKTNPDCLLKLIRHDAE
HYKPSDKQRKFQRTWPECPLLWLRPKDYCCPDQEVYQPMNRRIRPPQEPP
LSAIEKHLFQMSIFCKSVRAPCCKVGRRPPKCTKPRRPSECCKKFTPMPS
FSEACRHLIPRFCGSECACRGGSLCEMWNTYNMCNKSRRNCTKPLIGYSP
LRSRMRFPF*

AT13385.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:51:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19808-PA 266 GF19808-PA 1..266 1..259 684 53.4 Plus
Dana\GF20746-PA 237 GF20746-PA 88..224 96..231 165 35.5 Plus
Dana\GF12592-PA 303 GF12592-PA 142..283 95..228 154 33.1 Plus
Dana\GF19809-PA 280 GF19809-PA 109..240 83..203 150 36.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:51:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10651-PA 259 GG10651-PA 1..259 1..259 1218 87.6 Plus
Dere\GG10647-PA 303 GG10647-PA 143..283 95..228 171 34.8 Plus
Dere\GG11285-PA 232 GG11285-PA 88..224 96..231 147 36.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 13:51:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20819-PA 256 GH20819-PA 6..253 1..256 334 35.5 Plus
Dgri\GH20817-PA 240 GH20817-PA 86..220 90..228 160 40.6 Plus
Dgri\GH18815-PA 169 GH18815-PA 25..166 96..243 145 36.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:08
Subject Length Description Subject Range Query Range Score Percent Strand
cola-PA 259 CG30363-PA 1..259 1..259 1486 100 Plus
CG2127-PB 289 CG2127-PB 127..269 95..228 239 38.5 Plus
CG2127-PA 305 CG2127-PA 143..285 95..228 239 38.5 Plus
CG33340-PA 229 CG33340-PA 85..218 96..228 201 37.5 Plus
swif-PB 284 CG30366-PB 81..263 34..219 183 30.6 Plus
swif-PA 284 CG30366-PA 81..263 34..219 183 30.6 Plus
hubl-PB 291 CG30364-PB 130..268 96..226 172 37.6 Plus
hubl-PA 291 CG30364-PA 130..268 96..226 172 37.6 Plus
CG11635-PA 286 CG11635-PA 92..229 88..226 165 31.8 Plus
CG8701-PA 246 CG8701-PA 83..216 86..219 162 31.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 13:51:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20916-PA 257 GI20916-PA 19..254 18..256 403 37.7 Plus
Dmoj\GI20912-PA 250 GI20912-PA 93..230 95..228 168 37.5 Plus
Dmoj\GI20909-PA 248 GI20909-PA 97..231 102..232 163 37.2 Plus
Dmoj\GI10075-PA 236 GI10075-PA 90..226 96..231 155 35.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 13:51:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10866-PA 259 GL10866-PA 95..242 90..231 150 33.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 13:51:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15259-PA 259 GA15259-PA 95..242 90..231 150 33.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:51:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20696-PA 259 GM20696-PA 1..259 1..259 1323 96.5 Plus
Dsec\GM20692-PA 305 GM20692-PA 143..285 95..228 180 37.8 Plus
Dsec\GM26593-PA 232 GM26593-PA 88..224 96..231 149 36.7 Plus
Dsec\GM20697-PA 285 GM20697-PA 118..251 83..206 144 35.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 13:51:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15279-PA 259 GD15279-PA 1..259 1..259 1319 96.1 Plus
Dsim\GD15275-PA 305 GD15275-PA 143..285 95..228 187 38.5 Plus
Dsim\GD21095-PA 232 GD21095-PA 88..224 96..231 149 36.7 Plus
Dsim\GD15280-PA 285 GD15280-PA 118..251 83..206 144 35.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 13:51:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20646-PA 263 GJ20646-PA 6..260 1..256 485 41.9 Plus
Dvir\GJ20641-PA 249 GJ20641-PA 74..231 77..230 201 35.2 Plus
Dvir\GJ23810-PA 238 GJ23810-PA 25..228 38..231 161 29.8 Plus
Dvir\GJ20639-PA 249 GJ20639-PA 73..232 80..232 155 34.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:51:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15759-PA 265 GK15759-PA 23..265 20..258 573 49 Plus
Dwil\GK19110-PA 237 GK19110-PA 90..227 96..231 163 38.8 Plus
Dwil\GK19093-PA 213 GK19093-PA 50..174 87..203 159 39.4 Plus
Dwil\GK15825-PA 289 GK15825-PA 130..269 96..228 155 34.3 Plus
Dwil\GK15761-PA 301 GK15761-PA 140..253 95..203 151 40 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:51:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23102-PA 259 GE23102-PA 1..259 1..259 1241 90 Plus
Dyak\GE23064-PA 307 GE23064-PA 145..287 95..228 184 37.1 Plus
Dyak\GE23113-PA 284 GE23113-PA 119..251 84..206 151 37.3 Plus
Dyak\GE23478-PA 232 GE23478-PA 88..224 96..231 146 37.9 Plus

AT13385.hyp Sequence

Translation from 1000 to 1854

> AT13385.hyp
MQSALWIFCRQGFRSFATKAQGFRSFASKVTYHADPPCQPVDPLCHHVPS
GRCVQARETINLKLPHERLLKQERDQKKERKCCVLRSAAKNPCVEIRRPK
AAKLEEKPFRSMWEPPCKANEQPFCKEMLPRFDAMYYHPSNKCRCYQRTW
VECSPVKKRLKKVCCLDAIEPPEILYRIRPPCPGTCQINYKARRLLCADG
EWERDPTRKCPKFFHPCCKLARCNPRCSRGRKPTLCTKLRAPYPCYSEKI
RGTRPLRKRECLCLETTPKCIALAERMRRDGLNL*

AT13385.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:08:42
Subject Length Description Subject Range Query Range Score Percent Strand
swif-PB 284 CG30366-PB 1..284 1..284 1606 100 Plus
swif-PA 284 CG30366-PA 1..284 1..284 1606 100 Plus
hubl-PB 291 CG30364-PB 54..272 37..279 293 31 Plus
hubl-PA 291 CG30364-PA 54..272 37..279 293 31 Plus
CG11635-PA 286 CG11635-PA 41..235 88..279 219 33.6 Plus