Clone AT13439 Report

Search the DGRC for AT13439

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:134
Well:39
Vector:pOTB7
Associated Gene/TranscriptCG12209-RA
Protein status:AT13439.pep: gold
Preliminary Size:732
Sequenced Size:1209

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12209 2002-01-01 Sim4 clustering to Release 2
CG12209 2002-01-11 Blastp of sequenced clone
CG12209 2003-01-01 Sim4 clustering to Release 3
CG12209 2008-04-29 Release 5.5 accounting
CG12209 2008-08-15 Release 5.9 accounting
CG12209 2008-12-18 5.12 accounting

Clone Sequence Records

AT13439.complete Sequence

1209 bp (1209 high quality bases) assembled on 2002-01-11

GenBank Submission: AY084118

> AT13439.complete
ATCGTTTGTTACTGAATTCCATACTCCGACACGATACCCGGGCCACGCCC
ACACCGCCATGGAGGACCGCCGCCAGAGAATGCGGGCATATCGGCGGGCC
CGCCGGAAGTTTGCCTGCGTCGTCTACATGGTGACCATAGCCTGGATGGT
CCTGGCTATATTGCAATGGCTCCTGGTCAGCTTGATATCGGACATAAGTA
TGACCTTCACAAACTTTTACTGGATTAGCGTGATCTTCTTCGCGCTGGCC
ATGGTGATGGTCACGGTGTTCATATTCTTCGAGAAGGTCCGATTCATCAT
TGGCCTCAACTGGCTAATCACCGTGCTTATAGTGGAGTTTATAATAATTG
GTATGTTCGCTCTGGTGGCAAGAACTCTCTGGCAGGACTTGATAATGTGG
TTTATCATCTGTGTGCTGTTTGTCTTTATGTTTGTGCTGCTGGGATCCAT
TATACCACACGATCTTACATTGGACGTTGTAATATTGTTTGTAATGGCCT
TTATTTTCCTGATCATCACCGTATTCTTTGTCATGATGCACATTCTGATC
GATATGCCGTACTCCTTTGTGGTATTCCAGATCTTCATAAGCCTTATTGT
GCTCTTGTTCGTGATGTATCATGCCCAGACGATCAATGGTGGACGCTTTG
CCGAGATGCGGCTGAACGATCACCTGTTGGCCTCGCTCATCCTCTTCCAC
GACTTCATCATCATCTTCCTGCTCACCTTCTATGCACAGATTATCTACCG
GTTCGCTTCGAATGCCGCGAAAACCACGGGATCTCCGTTAGAGGGCAGTT
GGGTTCAGACGACACCGATTAATGGGGATGACGTCGTGGAAGACAATGAC
GAGGACAGCGAGGATGGACCGTCGGCAGTGGGCAGTGAGAATTCCCCAGG
TGGAAATGCATCATAACCCTCCAAAGGGGGCAATGTATTCATCTAGAGGC
GAAGAGACTACTTTTCTCCAGGAGTAATGATCGAGGGCATCAAATTGCAG
GATGCAGGATGGCTTGGTACTTAGTCGACTTGTAATTAGTGCCAATTAAT
ACCCAAAGGTATAAAGGAGACATATTTGGTATCCTGAAAACGCGAAAAAA
GCTGTGACTTATACAACAAAGAATCCAAAAATGGGCTTAGAATAGCATAT
AATATTGTCCATAATAAAACAGATATATTACTTGTGTTGTAAAAAAAAAA
AAAAAAAAA

AT13439.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:30:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG12209-RA 1268 CG12209-RA 89..1268 1..1190 5585 98.2 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:18:12
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 6133590..6134171 1190..607 2825 99.3 Minus
chr2R 21145070 chr2R 6134814..6134999 186..1 900 98.9 Minus
chr2R 21145070 chr2R 6134230..6134379 607..458 750 100 Minus
chr2R 21145070 chr2R 6134610..6134757 334..187 725 99.3 Minus
chr2R 21145070 chr2R 6134431..6134556 457..332 630 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:47:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:18:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10246069..10246644 1192..607 2650 97.6 Minus
2R 25286936 2R 10247287..10247472 186..1 870 97.8 Minus
2R 25286936 2R 10246703..10246852 607..458 735 99.3 Minus
2R 25286936 2R 10247083..10247230 334..187 725 99.3 Minus
2R 25286936 2R 10246904..10247029 457..332 615 99.2 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:58:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 10247446..10247843 1004..607 1975 99.7 Minus
2R 25260384 2R 10248486..10248671 186..1 870 97.8 Minus
2R 25260384 2R 10247268..10247454 1192..1003 835 96.8 Minus
2R 25260384 2R 10247902..10248051 607..458 735 99.3 Minus
2R 25260384 2R 10248282..10248429 334..187 725 99.3 Minus
2R 25260384 2R 10248103..10248228 457..332 615 99.2 Minus
Blast to na_te.dros performed 2019-03-15 15:18:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dhet\Uhu 1658 Dhet\Uhu DHUHUH3 1658bp AKA(S51651) Derived from X63028 (Rel. 36, Last updated, Version 7). 502..601 588..488 115 59.8 Minus

AT13439.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:19:13 Download gff for AT13439.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 6134613..6134757 187..331 99 <- Minus
chr2R 6134814..6134999 1..186 98   Minus
chr2R 6133590..6134170 608..1190 99 <- Minus
chr2R 6134230..6134379 458..607 100 <- Minus
chr2R 6134431..6134556 332..457 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:03:56 Download gff for AT13439.complete
Subject Subject Range Query Range Percent Splice Strand
CG12209-RA 1..858 59..916 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:49:33 Download gff for AT13439.complete
Subject Subject Range Query Range Percent Splice Strand
CG12209-RA 1..858 59..916 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:22:47 Download gff for AT13439.complete
Subject Subject Range Query Range Percent Splice Strand
CG12209-RA 1..858 59..916 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:16:32 Download gff for AT13439.complete
Subject Subject Range Query Range Percent Splice Strand
CG12209-RA 1..858 59..916 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:34:48 Download gff for AT13439.complete
Subject Subject Range Query Range Percent Splice Strand
CG12209-RA 1..858 59..916 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:13:28 Download gff for AT13439.complete
Subject Subject Range Query Range Percent Splice Strand
CG12209-RA 1..1178 1..1188 98   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:49:33 Download gff for AT13439.complete
Subject Subject Range Query Range Percent Splice Strand
CG12209-RA 1..1180 1..1190 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:22:47 Download gff for AT13439.complete
Subject Subject Range Query Range Percent Splice Strand
CG12209-RA 89..1268 1..1190 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:16:32 Download gff for AT13439.complete
Subject Subject Range Query Range Percent Splice Strand
CG12209-RA 1..1178 1..1188 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:34:48 Download gff for AT13439.complete
Subject Subject Range Query Range Percent Splice Strand
CG12209-RA 89..1268 1..1190 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:19:13 Download gff for AT13439.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10247086..10247230 187..331 99 <- Minus
2R 10247287..10247472 1..186 97   Minus
2R 10246904..10247029 332..457 99 <- Minus
2R 10246071..10246643 608..1190 97 <- Minus
2R 10246703..10246852 458..607 99 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:19:13 Download gff for AT13439.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10247086..10247230 187..331 99 <- Minus
2R 10247287..10247472 1..186 97   Minus
2R 10246904..10247029 332..457 99 <- Minus
2R 10246071..10246643 608..1190 97 <- Minus
2R 10246703..10246852 458..607 99 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:19:13 Download gff for AT13439.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10247086..10247230 187..331 99 <- Minus
2R 10247287..10247472 1..186 97   Minus
2R 10246904..10247029 332..457 99 <- Minus
2R 10246071..10246643 608..1190 97 <- Minus
2R 10246703..10246852 458..607 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:22:47 Download gff for AT13439.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6133576..6134148 608..1190 97 <- Minus
arm_2R 6134208..6134357 458..607 99 <- Minus
arm_2R 6134409..6134534 332..457 99 <- Minus
arm_2R 6134591..6134735 187..331 99 <- Minus
arm_2R 6134792..6134977 1..186 97   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:50:32 Download gff for AT13439.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10247270..10247842 608..1190 97 <- Minus
2R 10247902..10248051 458..607 99 <- Minus
2R 10248103..10248228 332..457 99 <- Minus
2R 10248285..10248429 187..331 99 <- Minus
2R 10248486..10248671 1..186 97   Minus

AT13439.hyp Sequence

Translation from 1 to 915

> AT13439.hyp
SFVTEFHTPTRYPGHAHTAMEDRRQRMRAYRRARRKFACVVYMVTIAWMV
LAILQWLLVSLISDISMTFTNFYWISVIFFALAMVMVTVFIFFEKVRFII
GLNWLITVLIVEFIIIGMFALVARTLWQDLIMWFIICVLFVFMFVLLGSI
IPHDLTLDVVILFVMAFIFLIITVFFVMMHILIDMPYSFVVFQIFISLIV
LLFVMYHAQTINGGRFAEMRLNDHLLASLILFHDFIIIFLLTFYAQIIYR
FASNAAKTTGSPLEGSWVQTTPINGDDVVEDNDEDSEDGPSAVGSENSPG
GNAS*

AT13439.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:08:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG12209-PA 285 CG12209-PA 1..285 20..304 1450 100 Plus
CG42570-PB 609 CG42570-PB 8..285 28..304 620 44.8 Plus
CG42570-PA 610 CG42570-PA 8..301 28..300 620 43.9 Plus
CG34315-PB 266 CG34315-PB 1..224 20..243 536 42.4 Plus
CG42571-PB 292 CG42571-PB 8..266 34..285 414 34 Plus

AT13439.pep Sequence

Translation from 58 to 915

> AT13439.pep
MEDRRQRMRAYRRARRKFACVVYMVTIAWMVLAILQWLLVSLISDISMTF
TNFYWISVIFFALAMVMVTVFIFFEKVRFIIGLNWLITVLIVEFIIIGMF
ALVARTLWQDLIMWFIICVLFVFMFVLLGSIIPHDLTLDVVILFVMAFIF
LIITVFFVMMHILIDMPYSFVVFQIFISLIVLLFVMYHAQTINGGRFAEM
RLNDHLLASLILFHDFIIIFLLTFYAQIIYRFASNAAKTTGSPLEGSWVQ
TTPINGDDVVEDNDEDSEDGPSAVGSENSPGGNAS*

AT13439.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:46:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12132-PA 314 GF12132-PA 1..274 1..285 920 68.1 Plus
Dana\GF24093-PA 620 GF24093-PA 7..234 8..231 544 47.4 Plus
Dana\GF12965-PA 243 GF12965-PA 1..222 1..224 452 43.3 Plus
Dana\GF24797-PA 248 GF24797-PA 24..247 15..235 213 27.2 Plus
Dana\GF24796-PA 290 GF24796-PA 22..267 5..264 175 26.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:46:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25223-PA 290 GG25223-PA 1..280 1..284 1191 85.2 Plus
Dere\GG15926-PA 621 GG15926-PA 8..234 9..231 511 48.9 Plus
Dere\GG22518-PA 270 GG22518-PA 1..211 1..211 414 44.5 Plus
Dere\GG15925-PA 275 GG15925-PA 57..257 81..279 273 32.9 Plus
Dere\GG15003-PA 277 GG15003-PA 24..204 4..222 224 29.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:46:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20115-PA 247 GH20115-PA 1..241 1..245 648 53.1 Plus
Dgri\GH25311-PA 501 GH25311-PA 11..288 11..283 495 43.5 Plus
Dgri\GH25311-PB 338 GH25311-PB 1..275 1..270 482 42.2 Plus
Dgri\GH24931-PA 267 GH24931-PA 1..266 1..270 465 41.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:54:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG12209-PA 285 CG12209-PA 1..285 1..285 1450 100 Plus
CG42570-PB 609 CG42570-PB 8..285 9..285 620 44.8 Plus
CG42570-PA 610 CG42570-PA 8..301 9..281 620 43.9 Plus
CG34315-PB 266 CG34315-PB 1..224 1..224 536 42.4 Plus
CG42571-PB 292 CG42571-PB 8..266 15..266 414 34 Plus
CG32391-PC 244 CG32391-PC 20..232 15..225 276 27.2 Plus
CG34030-PA 273 CG34030-PA 40..199 14..222 215 27.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:46:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20209-PA 278 GI20209-PA 9..240 12..243 604 51.3 Plus
Dmoj\GI14496-PA 329 GI14496-PA 1..235 1..231 558 50.2 Plus
Dmoj\GI18395-PA 266 GI18395-PA 1..224 1..224 491 45.5 Plus
Dmoj\GI11688-PA 401 GI11688-PA 1..296 1..235 488 42.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:46:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10484-PA 281 GL10484-PA 1..279 1..279 812 58.9 Plus
Dper\GL20108-PA 264 GL20108-PA 1..256 1..273 659 53.5 Plus
Dper\GL25039-PA 273 GL25039-PA 7..270 8..267 479 42.7 Plus
Dper\GL25028-PA 253 GL25028-PA 97..221 135..264 216 38.1 Plus
Dper\GL25150-PA 169 GL25150-PA 2..149 78..225 210 35.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:46:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24384-PA 281 GA24384-PA 1..279 1..279 825 59.6 Plus
Dpse\GA24933-PA 264 GA24933-PA 1..258 1..268 676 55.2 Plus
Dpse\GA30488-PA 251 GA30488-PA 2..224 3..225 493 41.7 Plus
Dpse\GA23633-PA 273 GA23633-PA 7..270 8..267 481 42.7 Plus
Dpse\GA23632-PA 276 GA23632-PA 55..272 76..276 311 34.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:46:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20542-PA 285 GM20542-PA 1..285 1..285 1218 90.5 Plus
Dsec\GM25557-PA 286 GM25557-PA 8..184 9..183 338 41.8 Plus
Dsec\GM20304-PA 192 GM20304-PA 1..183 1..183 268 37.7 Plus
Dsec\GM25556-PA 145 GM25556-PA 1..129 153..268 195 31.3 Plus
Dsec\GM13792-PA 274 GM13792-PA 62..200 36..222 173 28.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:46:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25999-PA 285 GD25999-PA 1..285 1..285 1213 90.2 Plus
Dsim\GD14570-PA 382 GD14570-PA 5..261 14..277 544 45.1 Plus
Dsim\GD25784-PA 266 GD25784-PA 1..209 1..209 381 42.1 Plus
Dsim\GD13092-PA 284 GD13092-PA 62..210 36..222 210 31 Plus
Dsim\GD13093-PA 209 GD13093-PA 97..197 116..225 165 33.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:46:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20158-PA 259 GJ20158-PA 1..242 1..243 705 57.1 Plus
Dvir\GJ11362-PA 903 GJ11362-PA 10..235 10..231 636 52.2 Plus
Dvir\GJ21472-PA 270 GJ21472-PA 1..225 1..224 497 42.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:46:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18017-PA 279 GK18017-PA 17..254 17..253 835 69.3 Plus
Dwil\GK15448-PA 264 GK15448-PA 5..252 8..258 550 44.3 Plus
Dwil\GK17542-PA 321 GK17542-PA 51..242 36..226 277 33 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:46:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21688-PA 286 GE21688-PA 1..281 1..281 1161 87.2 Plus
Dyak\GE22273-PA 497 GE22273-PA 8..304 9..282 536 42.4 Plus
Dyak\GE23162-PA 270 GE23162-PA 8..264 9..270 525 44.4 Plus
Dyak\GE13390-PA 270 GE13390-PA 1..211 1..211 422 44.5 Plus
Dyak\GE22272-PA 289 GE22272-PA 6..280 13..285 378 32.1 Plus