BDGP Sequence Production Resources |
Search the DGRC for AT13439
Library: | AT |
Tissue Source: | Drosophila melanogaster adult testes |
Created by: | Ling Hong |
Date Registered: | 2000-06-08 |
Comments: | Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7 |
Original Plate Number: | 134 |
Well: | 39 |
Vector: | pOTB7 |
Associated Gene/Transcript | CG12209-RA |
Protein status: | AT13439.pep: gold |
Preliminary Size: | 732 |
Sequenced Size: | 1209 |
Gene | Date | Evidence |
---|---|---|
CG12209 | 2002-01-01 | Sim4 clustering to Release 2 |
CG12209 | 2002-01-11 | Blastp of sequenced clone |
CG12209 | 2003-01-01 | Sim4 clustering to Release 3 |
CG12209 | 2008-04-29 | Release 5.5 accounting |
CG12209 | 2008-08-15 | Release 5.9 accounting |
CG12209 | 2008-12-18 | 5.12 accounting |
1209 bp (1209 high quality bases) assembled on 2002-01-11
GenBank Submission: AY084118
> AT13439.complete ATCGTTTGTTACTGAATTCCATACTCCGACACGATACCCGGGCCACGCCC ACACCGCCATGGAGGACCGCCGCCAGAGAATGCGGGCATATCGGCGGGCC CGCCGGAAGTTTGCCTGCGTCGTCTACATGGTGACCATAGCCTGGATGGT CCTGGCTATATTGCAATGGCTCCTGGTCAGCTTGATATCGGACATAAGTA TGACCTTCACAAACTTTTACTGGATTAGCGTGATCTTCTTCGCGCTGGCC ATGGTGATGGTCACGGTGTTCATATTCTTCGAGAAGGTCCGATTCATCAT TGGCCTCAACTGGCTAATCACCGTGCTTATAGTGGAGTTTATAATAATTG GTATGTTCGCTCTGGTGGCAAGAACTCTCTGGCAGGACTTGATAATGTGG TTTATCATCTGTGTGCTGTTTGTCTTTATGTTTGTGCTGCTGGGATCCAT TATACCACACGATCTTACATTGGACGTTGTAATATTGTTTGTAATGGCCT TTATTTTCCTGATCATCACCGTATTCTTTGTCATGATGCACATTCTGATC GATATGCCGTACTCCTTTGTGGTATTCCAGATCTTCATAAGCCTTATTGT GCTCTTGTTCGTGATGTATCATGCCCAGACGATCAATGGTGGACGCTTTG CCGAGATGCGGCTGAACGATCACCTGTTGGCCTCGCTCATCCTCTTCCAC GACTTCATCATCATCTTCCTGCTCACCTTCTATGCACAGATTATCTACCG GTTCGCTTCGAATGCCGCGAAAACCACGGGATCTCCGTTAGAGGGCAGTT GGGTTCAGACGACACCGATTAATGGGGATGACGTCGTGGAAGACAATGAC GAGGACAGCGAGGATGGACCGTCGGCAGTGGGCAGTGAGAATTCCCCAGG TGGAAATGCATCATAACCCTCCAAAGGGGGCAATGTATTCATCTAGAGGC GAAGAGACTACTTTTCTCCAGGAGTAATGATCGAGGGCATCAAATTGCAG GATGCAGGATGGCTTGGTACTTAGTCGACTTGTAATTAGTGCCAATTAAT ACCCAAAGGTATAAAGGAGACATATTTGGTATCCTGAAAACGCGAAAAAA GCTGTGACTTATACAACAAAGAATCCAAAAATGGGCTTAGAATAGCATAT AATATTGTCCATAATAAAACAGATATATTACTTGTGTTGTAAAAAAAAAA AAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12209-RA | 1268 | CG12209-RA | 89..1268 | 1..1190 | 5585 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 6133590..6134171 | 1190..607 | 2825 | 99.3 | Minus |
chr2R | 21145070 | chr2R | 6134814..6134999 | 186..1 | 900 | 98.9 | Minus |
chr2R | 21145070 | chr2R | 6134230..6134379 | 607..458 | 750 | 100 | Minus |
chr2R | 21145070 | chr2R | 6134610..6134757 | 334..187 | 725 | 99.3 | Minus |
chr2R | 21145070 | chr2R | 6134431..6134556 | 457..332 | 630 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 10246069..10246644 | 1192..607 | 2650 | 97.6 | Minus |
2R | 25286936 | 2R | 10247287..10247472 | 186..1 | 870 | 97.8 | Minus |
2R | 25286936 | 2R | 10246703..10246852 | 607..458 | 735 | 99.3 | Minus |
2R | 25286936 | 2R | 10247083..10247230 | 334..187 | 725 | 99.3 | Minus |
2R | 25286936 | 2R | 10246904..10247029 | 457..332 | 615 | 99.2 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 10247446..10247843 | 1004..607 | 1975 | 99.7 | Minus |
2R | 25260384 | 2R | 10248486..10248671 | 186..1 | 870 | 97.8 | Minus |
2R | 25260384 | 2R | 10247268..10247454 | 1192..1003 | 835 | 96.8 | Minus |
2R | 25260384 | 2R | 10247902..10248051 | 607..458 | 735 | 99.3 | Minus |
2R | 25260384 | 2R | 10248282..10248429 | 334..187 | 725 | 99.3 | Minus |
2R | 25260384 | 2R | 10248103..10248228 | 457..332 | 615 | 99.2 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dhet\Uhu | 1658 | Dhet\Uhu DHUHUH3 1658bp AKA(S51651) Derived from X63028 (Rel. 36, Last updated, Version 7). | 502..601 | 588..488 | 115 | 59.8 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 6134613..6134757 | 187..331 | 99 | <- | Minus |
chr2R | 6134814..6134999 | 1..186 | 98 | Minus | |
chr2R | 6133590..6134170 | 608..1190 | 99 | <- | Minus |
chr2R | 6134230..6134379 | 458..607 | 100 | <- | Minus |
chr2R | 6134431..6134556 | 332..457 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12209-RA | 1..858 | 59..916 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12209-RA | 1..858 | 59..916 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12209-RA | 1..858 | 59..916 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12209-RA | 1..858 | 59..916 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12209-RA | 1..858 | 59..916 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12209-RA | 1..1178 | 1..1188 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12209-RA | 1..1180 | 1..1190 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12209-RA | 89..1268 | 1..1190 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12209-RA | 1..1178 | 1..1188 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12209-RA | 89..1268 | 1..1190 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 10247086..10247230 | 187..331 | 99 | <- | Minus |
2R | 10247287..10247472 | 1..186 | 97 | Minus | |
2R | 10246904..10247029 | 332..457 | 99 | <- | Minus |
2R | 10246071..10246643 | 608..1190 | 97 | <- | Minus |
2R | 10246703..10246852 | 458..607 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 10247086..10247230 | 187..331 | 99 | <- | Minus |
2R | 10247287..10247472 | 1..186 | 97 | Minus | |
2R | 10246904..10247029 | 332..457 | 99 | <- | Minus |
2R | 10246071..10246643 | 608..1190 | 97 | <- | Minus |
2R | 10246703..10246852 | 458..607 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 10247086..10247230 | 187..331 | 99 | <- | Minus |
2R | 10247287..10247472 | 1..186 | 97 | Minus | |
2R | 10246904..10247029 | 332..457 | 99 | <- | Minus |
2R | 10246071..10246643 | 608..1190 | 97 | <- | Minus |
2R | 10246703..10246852 | 458..607 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 6133576..6134148 | 608..1190 | 97 | <- | Minus |
arm_2R | 6134208..6134357 | 458..607 | 99 | <- | Minus |
arm_2R | 6134409..6134534 | 332..457 | 99 | <- | Minus |
arm_2R | 6134591..6134735 | 187..331 | 99 | <- | Minus |
arm_2R | 6134792..6134977 | 1..186 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 10247270..10247842 | 608..1190 | 97 | <- | Minus |
2R | 10247902..10248051 | 458..607 | 99 | <- | Minus |
2R | 10248103..10248228 | 332..457 | 99 | <- | Minus |
2R | 10248285..10248429 | 187..331 | 99 | <- | Minus |
2R | 10248486..10248671 | 1..186 | 97 | Minus |
Translation from 1 to 915
> AT13439.hyp SFVTEFHTPTRYPGHAHTAMEDRRQRMRAYRRARRKFACVVYMVTIAWMV LAILQWLLVSLISDISMTFTNFYWISVIFFALAMVMVTVFIFFEKVRFII GLNWLITVLIVEFIIIGMFALVARTLWQDLIMWFIICVLFVFMFVLLGSI IPHDLTLDVVILFVMAFIFLIITVFFVMMHILIDMPYSFVVFQIFISLIV LLFVMYHAQTINGGRFAEMRLNDHLLASLILFHDFIIIFLLTFYAQIIYR FASNAAKTTGSPLEGSWVQTTPINGDDVVEDNDEDSEDGPSAVGSENSPG GNAS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12209-PA | 285 | CG12209-PA | 1..285 | 20..304 | 1450 | 100 | Plus |
CG42570-PB | 609 | CG42570-PB | 8..285 | 28..304 | 620 | 44.8 | Plus |
CG42570-PA | 610 | CG42570-PA | 8..301 | 28..300 | 620 | 43.9 | Plus |
CG34315-PB | 266 | CG34315-PB | 1..224 | 20..243 | 536 | 42.4 | Plus |
CG42571-PB | 292 | CG42571-PB | 8..266 | 34..285 | 414 | 34 | Plus |
Translation from 58 to 915
> AT13439.pep MEDRRQRMRAYRRARRKFACVVYMVTIAWMVLAILQWLLVSLISDISMTF TNFYWISVIFFALAMVMVTVFIFFEKVRFIIGLNWLITVLIVEFIIIGMF ALVARTLWQDLIMWFIICVLFVFMFVLLGSIIPHDLTLDVVILFVMAFIF LIITVFFVMMHILIDMPYSFVVFQIFISLIVLLFVMYHAQTINGGRFAEM RLNDHLLASLILFHDFIIIFLLTFYAQIIYRFASNAAKTTGSPLEGSWVQ TTPINGDDVVEDNDEDSEDGPSAVGSENSPGGNAS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12132-PA | 314 | GF12132-PA | 1..274 | 1..285 | 920 | 68.1 | Plus |
Dana\GF24093-PA | 620 | GF24093-PA | 7..234 | 8..231 | 544 | 47.4 | Plus |
Dana\GF12965-PA | 243 | GF12965-PA | 1..222 | 1..224 | 452 | 43.3 | Plus |
Dana\GF24797-PA | 248 | GF24797-PA | 24..247 | 15..235 | 213 | 27.2 | Plus |
Dana\GF24796-PA | 290 | GF24796-PA | 22..267 | 5..264 | 175 | 26.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG25223-PA | 290 | GG25223-PA | 1..280 | 1..284 | 1191 | 85.2 | Plus |
Dere\GG15926-PA | 621 | GG15926-PA | 8..234 | 9..231 | 511 | 48.9 | Plus |
Dere\GG22518-PA | 270 | GG22518-PA | 1..211 | 1..211 | 414 | 44.5 | Plus |
Dere\GG15925-PA | 275 | GG15925-PA | 57..257 | 81..279 | 273 | 32.9 | Plus |
Dere\GG15003-PA | 277 | GG15003-PA | 24..204 | 4..222 | 224 | 29.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20115-PA | 247 | GH20115-PA | 1..241 | 1..245 | 648 | 53.1 | Plus |
Dgri\GH25311-PA | 501 | GH25311-PA | 11..288 | 11..283 | 495 | 43.5 | Plus |
Dgri\GH25311-PB | 338 | GH25311-PB | 1..275 | 1..270 | 482 | 42.2 | Plus |
Dgri\GH24931-PA | 267 | GH24931-PA | 1..266 | 1..270 | 465 | 41.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12209-PA | 285 | CG12209-PA | 1..285 | 1..285 | 1450 | 100 | Plus |
CG42570-PB | 609 | CG42570-PB | 8..285 | 9..285 | 620 | 44.8 | Plus |
CG42570-PA | 610 | CG42570-PA | 8..301 | 9..281 | 620 | 43.9 | Plus |
CG34315-PB | 266 | CG34315-PB | 1..224 | 1..224 | 536 | 42.4 | Plus |
CG42571-PB | 292 | CG42571-PB | 8..266 | 15..266 | 414 | 34 | Plus |
CG32391-PC | 244 | CG32391-PC | 20..232 | 15..225 | 276 | 27.2 | Plus |
CG34030-PA | 273 | CG34030-PA | 40..199 | 14..222 | 215 | 27.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20209-PA | 278 | GI20209-PA | 9..240 | 12..243 | 604 | 51.3 | Plus |
Dmoj\GI14496-PA | 329 | GI14496-PA | 1..235 | 1..231 | 558 | 50.2 | Plus |
Dmoj\GI18395-PA | 266 | GI18395-PA | 1..224 | 1..224 | 491 | 45.5 | Plus |
Dmoj\GI11688-PA | 401 | GI11688-PA | 1..296 | 1..235 | 488 | 42.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10484-PA | 281 | GL10484-PA | 1..279 | 1..279 | 812 | 58.9 | Plus |
Dper\GL20108-PA | 264 | GL20108-PA | 1..256 | 1..273 | 659 | 53.5 | Plus |
Dper\GL25039-PA | 273 | GL25039-PA | 7..270 | 8..267 | 479 | 42.7 | Plus |
Dper\GL25028-PA | 253 | GL25028-PA | 97..221 | 135..264 | 216 | 38.1 | Plus |
Dper\GL25150-PA | 169 | GL25150-PA | 2..149 | 78..225 | 210 | 35.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA24384-PA | 281 | GA24384-PA | 1..279 | 1..279 | 825 | 59.6 | Plus |
Dpse\GA24933-PA | 264 | GA24933-PA | 1..258 | 1..268 | 676 | 55.2 | Plus |
Dpse\GA30488-PA | 251 | GA30488-PA | 2..224 | 3..225 | 493 | 41.7 | Plus |
Dpse\GA23633-PA | 273 | GA23633-PA | 7..270 | 8..267 | 481 | 42.7 | Plus |
Dpse\GA23632-PA | 276 | GA23632-PA | 55..272 | 76..276 | 311 | 34.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20542-PA | 285 | GM20542-PA | 1..285 | 1..285 | 1218 | 90.5 | Plus |
Dsec\GM25557-PA | 286 | GM25557-PA | 8..184 | 9..183 | 338 | 41.8 | Plus |
Dsec\GM20304-PA | 192 | GM20304-PA | 1..183 | 1..183 | 268 | 37.7 | Plus |
Dsec\GM25556-PA | 145 | GM25556-PA | 1..129 | 153..268 | 195 | 31.3 | Plus |
Dsec\GM13792-PA | 274 | GM13792-PA | 62..200 | 36..222 | 173 | 28.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25999-PA | 285 | GD25999-PA | 1..285 | 1..285 | 1213 | 90.2 | Plus |
Dsim\GD14570-PA | 382 | GD14570-PA | 5..261 | 14..277 | 544 | 45.1 | Plus |
Dsim\GD25784-PA | 266 | GD25784-PA | 1..209 | 1..209 | 381 | 42.1 | Plus |
Dsim\GD13092-PA | 284 | GD13092-PA | 62..210 | 36..222 | 210 | 31 | Plus |
Dsim\GD13093-PA | 209 | GD13093-PA | 97..197 | 116..225 | 165 | 33.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20158-PA | 259 | GJ20158-PA | 1..242 | 1..243 | 705 | 57.1 | Plus |
Dvir\GJ11362-PA | 903 | GJ11362-PA | 10..235 | 10..231 | 636 | 52.2 | Plus |
Dvir\GJ21472-PA | 270 | GJ21472-PA | 1..225 | 1..224 | 497 | 42.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK18017-PA | 279 | GK18017-PA | 17..254 | 17..253 | 835 | 69.3 | Plus |
Dwil\GK15448-PA | 264 | GK15448-PA | 5..252 | 8..258 | 550 | 44.3 | Plus |
Dwil\GK17542-PA | 321 | GK17542-PA | 51..242 | 36..226 | 277 | 33 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE21688-PA | 286 | GE21688-PA | 1..281 | 1..281 | 1161 | 87.2 | Plus |
Dyak\GE22273-PA | 497 | GE22273-PA | 8..304 | 9..282 | 536 | 42.4 | Plus |
Dyak\GE23162-PA | 270 | GE23162-PA | 8..264 | 9..270 | 525 | 44.4 | Plus |
Dyak\GE13390-PA | 270 | GE13390-PA | 1..211 | 1..211 | 422 | 44.5 | Plus |
Dyak\GE22272-PA | 289 | GE22272-PA | 6..280 | 13..285 | 378 | 32.1 | Plus |