Clone AT13467 Report

Search the DGRC for AT13467

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:134
Well:67
Vector:pOTB7
Associated Gene/TranscriptCG15543-RA
Protein status:AT13467.pep: gold
Preliminary Size:873
Sequenced Size:1033

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15543 2002-01-01 Sim4 clustering to Release 2
CG15543 2002-06-10 Blastp of sequenced clone
CG15543 2003-01-01 Sim4 clustering to Release 3
CG15543 2008-04-29 Release 5.5 accounting
CG15543 2008-08-15 Release 5.9 accounting
CG15543 2008-12-18 5.12 accounting

Clone Sequence Records

AT13467.complete Sequence

1033 bp (1033 high quality bases) assembled on 2002-06-10

GenBank Submission: AY070787

> AT13467.complete
TTTAAATATAACTCATAGTCAGTCCCAAAGCCAAGTTAGCGAGATGTCCT
CGCCCACAGATTTCGACCGTTCCATGCTGGTGGAGTACAGTGCCGCATTT
ATGTACTACATTGAGAAGCACAAGCTGATGGAGGTGATGAGTCGTCTCCT
GGCCGAGATTTCCGTGGCGGATGGAGTGACAGATGTGCGAAGATGGATGG
GCGAGAACATAACCAGGATCGGCGTAGAGATATACACCAAATCGATGGAC
GCCTTTCATCGGGGAGTAAGGGGTGATTTCTACCAGCTGCCCAGGAGCTT
CTACCACCGAATAGTGCTGCACGGCAAGCCAGGATCTGGGCGAAGGTCCT
TGGCATATGTGCTAGCCCAGCGCTGGAATCTGCTAATATTGGATGCCGAT
GTGCTGGCCTATCATAGCATCAACAAACAGGACCAGGATGAGCCGTCCAG
ATTGCTGCAGGAAGCCATTGAAAAGGATTGTGTCTACAAACGTTCGCAGG
CAGTGGGCAATCTCATCGAGAACAGACTCCTCCAGGAGGACGCCCTTCAC
AGGGGTTGGATTCTGATCAATTACCCGAACAATAAGTGCGAGGCTGAGGA
ACTCTTCGAGGGCTTCACTGTGCCACCGAATCGATTCGTATTCCTACAAA
TCGACGAGCGTCTGGCTCGCATGAGAATCCTGCTCAATAGCTACTCGCCA
GGACCTCAAGCTCACGTCAGTTTTGTGGACCGCCAGATGGCCCAGTTCCG
GAAAAGTGAACCTGCTCTAAGCTCCTACCTCAGCCAGCGGAGAGAAGTGG
TCTATGTGGATGCGTCACCTTGTTTCGAGCAGGTCAAGTGCGGGATCATC
TCGGAGCTCACCAAAACTCCCTATGTGCTGGGTAAAAAATACGGCGAGGC
AAATGCCAAAATCTGAATTTGATTCCAGCCACTCTGCATCCAAATTGAGT
AACAATGTGTTCTTGGAGTCCTTTCTGTGATTACTCTCGTTATTATTATT
ATTTGCTCAAGTGTCAAAAAAAAAAAAAAAAAA

AT13467.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:49:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG15543-RA 1015 CG15543-RA 1..1015 1..1015 5075 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:56:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 26565404..26566418 1..1015 5015 99.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:47:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:56:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30742901..30743915 1..1015 5075 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:22:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 30483732..30484746 1..1015 5075 100 Plus
Blast to na_te.dros performed on 2019-03-16 04:56:54 has no hits.

AT13467.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:57:37 Download gff for AT13467.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 26565404..26566418 1..1015 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:04:01 Download gff for AT13467.complete
Subject Subject Range Query Range Percent Splice Strand
CG15543-RA 1..873 44..916 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:25:18 Download gff for AT13467.complete
Subject Subject Range Query Range Percent Splice Strand
CG15543-RA 1..873 44..916 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:46:26 Download gff for AT13467.complete
Subject Subject Range Query Range Percent Splice Strand
CG15543-RA 1..873 44..916 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:15:49 Download gff for AT13467.complete
Subject Subject Range Query Range Percent Splice Strand
CG15543-RA 1..873 44..916 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:55:04 Download gff for AT13467.complete
Subject Subject Range Query Range Percent Splice Strand
CG15543-RA 1..873 44..916 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:53:05 Download gff for AT13467.complete
Subject Subject Range Query Range Percent Splice Strand
CG15543-RA 1..1014 1..1014 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:25:18 Download gff for AT13467.complete
Subject Subject Range Query Range Percent Splice Strand
CG15543-RA 1..1014 1..1014 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:46:26 Download gff for AT13467.complete
Subject Subject Range Query Range Percent Splice Strand
CG15543-RA 22..1036 1..1015 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:15:49 Download gff for AT13467.complete
Subject Subject Range Query Range Percent Splice Strand
CG15543-RA 1..1014 1..1014 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:55:04 Download gff for AT13467.complete
Subject Subject Range Query Range Percent Splice Strand
CG15543-RA 22..1036 1..1015 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:57:37 Download gff for AT13467.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30742901..30743915 1..1015 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:57:37 Download gff for AT13467.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30742901..30743915 1..1015 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:57:37 Download gff for AT13467.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30742901..30743915 1..1015 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:46:26 Download gff for AT13467.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26568623..26569637 1..1015 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:49:01 Download gff for AT13467.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30483732..30484746 1..1015 100   Plus

AT13467.hyp Sequence

Translation from 1 to 915

> AT13467.hyp
LNITHSQSQSQVSEMSSPTDFDRSMLVEYSAAFMYYIEKHKLMEVMSRLL
AEISVADGVTDVRRWMGENITRIGVEIYTKSMDAFHRGVRGDFYQLPRSF
YHRIVLHGKPGSGRRSLAYVLAQRWNLLILDADVLAYHSINKQDQDEPSR
LLQEAIEKDCVYKRSQAVGNLIENRLLQEDALHRGWILINYPNNKCEAEE
LFEGFTVPPNRFVFLQIDERLARMRILLNSYSPGPQAHVSFVDRQMAQFR
KSEPALSSYLSQRREVVYVDASPCFEQVKCGIISELTKTPYVLGKKYGEA
NAKI*

AT13467.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:08:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG15543-PB 290 CG15543-PB 1..290 15..304 1504 100 Plus
CG15543-PA 290 CG15543-PA 1..290 15..304 1504 100 Plus

AT13467.pep Sequence

Translation from 43 to 915

> AT13467.pep
MSSPTDFDRSMLVEYSAAFMYYIEKHKLMEVMSRLLAEISVADGVTDVRR
WMGENITRIGVEIYTKSMDAFHRGVRGDFYQLPRSFYHRIVLHGKPGSGR
RSLAYVLAQRWNLLILDADVLAYHSINKQDQDEPSRLLQEAIEKDCVYKR
SQAVGNLIENRLLQEDALHRGWILINYPNNKCEAEELFEGFTVPPNRFVF
LQIDERLARMRILLNSYSPGPQAHVSFVDRQMAQFRKSEPALSSYLSQRR
EVVYVDASPCFEQVKCGIISELTKTPYVLGKKYGEANAKI*

AT13467.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:54:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22921-PA 290 GF22921-PA 1..290 1..290 1308 80.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:54:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11773-PA 290 GG11773-PA 1..290 1..290 1490 93.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:55:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14212-PA 279 GH14212-PA 1..277 11..288 1087 69.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:28:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG15543-PB 290 CG15543-PB 1..290 1..290 1504 100 Plus
CG15543-PA 290 CG15543-PA 1..290 1..290 1504 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:55:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22120-PA 289 GI22120-PA 1..286 1..287 1055 65.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:55:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13514-PA 289 GL13514-PA 1..289 1..290 1143 70.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:55:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13800-PA 289 GA13800-PA 1..289 1..290 1147 70.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:55:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12903-PA 287 GM12903-PA 1..150 1..150 782 96.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:55:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21544-PA 290 GD21544-PA 1..290 1..290 1491 94.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:55:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24241-PA 289 GJ24241-PA 1..284 1..285 1086 67.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:55:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14153-PA 291 GK14153-PA 1..290 1..290 1143 70.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:55:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10900-PA 290 GE10900-PA 1..290 1..290 1476 93.1 Plus