Clone AT13565 Report

Search the DGRC for AT13565

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:135
Well:65
Vector:pOTB7
Associated Gene/TranscriptHsp60C-RA
Protein status:AT13565.pep: gold
Preliminary Size:2184
Sequenced Size:2058

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7235 2002-09-24 Blastp of sequenced clone
CG7235 2003-01-01 Sim4 clustering to Release 3
Hsp60C 2008-04-29 Release 5.5 accounting
Hsp60C 2008-08-15 Release 5.9 accounting
Hsp60C 2008-12-18 5.12 accounting

Clone Sequence Records

AT13565.complete Sequence

2058 bp (2058 high quality bases) assembled on 2002-09-24

GenBank Submission: BT001308

> AT13565.complete
GTAGTGAGTTTGATTTTTAAAAGGCTGAAATTTTTTTAATGAAAAGAAAG
GAACTGAATATTTTAGAGACCAACTAAAGCTCTCCATATTACATTTGACC
GCTCTAGCTTCAACATCGTTTTCCGATTCATAGGCAAATATCAGTCAACA
TGATGCGCATGTTCCGTTACACCAACACATTGCAGCGTACTGCAAAGATC
AGTCACGTCCTGTGGGCCCGTAACTATGCAAAGGATGTTAGGTTCGGGCC
GGAGGTGAGGGCCATGATGCTGCAGGGAGTGGACGTGCTGGCGGATGCCG
TGGCCGTGACCATGGGACCAAAGGGACGCAACGTGATCATCGAGCAGAGC
TGGGGATCGCCAAAGATTACCAAGGACGGCGTGACGGTGGCCAAGTCGAT
TGCCCTCAAGGACAAGTTCCAGAATATCGGCGCCAAACTGGTGCAGGATG
TGGCGAACAACACGAACGAGGAGGCAGGTGATGGCACCACCACGGCCACC
GTTCTGGCCCGCGCCATTGCCAAGGAGGGATTCGAGAAGATTTCACGGGG
TGCCAGTCCGGTGGAGATCCGCCGCGGAGTTATGCTAGCCATCGAGACGG
TCAAGGACAACCTTCGTCGGTTGTCCCGGCCAGTTAACACGCCCGAGGAG
ATCTGCCAGGTGGCGACGATCTCTGCGAACGGCGACAAGTCGGTGGGAAA
CCTCATCAGCGAGGCCATCAAGAAGGTGGGTCGAGACGGCGTTATCACTG
TCAAGGATGGCAAGACCCTTTGCGACGAACTGGAGGTGATCGAGGGCATG
AAATTTGACCGTGGTTACATTTCGCCTTACTTTATTAACACCTCCAAGGG
AGCAAAGGTGGAGTTCCAGGACGCGCTTCTCCTCTTTTGCGAGAAGAAAA
TCAAGTCGGCACCTAGCATCGTGCCTGCCCTGGAGTTGGCCAACGCTCAG
CGCAAGCCCTTGGTCATTATCGCTGAGGACTTGGAGGCGGAGGCACTCAG
CACTCTGGTGGTGAACCGCCTAAAGGTGGGCCTCCAAGTGTGCGCGGTGA
AGGCACCCGGTTTTGGTGACAATCGCAAGGAGAATCTGATGGACATGGCC
GTGGCCACCGGTGGAATCGTGTTTGGAGACGAAGCCAATATGGTACGGCT
CGAGGATATCAAGATGAGCGACTTTGGACGTGTAGGCGAGGTAGTAGTCT
CGAAAGACGACACAATGCTGCTCAAGGGCAAGGGACAGAAGGCAGAGGTG
GAGAAAAGGGTCGAGGGTCTGCGCGAGGCCATCAAGGAGTCGACTTCCTC
CTACGAGAAGGAGAAGATGCAAGAGCGCTTGGCCCGCCTCTCCTCCGGTG
TCGCCTTGCTGCGAGTGGGCGGTTCCAGTGACGTGGAGGTTAGCGAGAAG
AAGGATCGAGTCATCGATGCCCTGAATGCCACCCGTGCTGCCGTGGAGGA
GGGAATCGTGCCCGGGGGCGGCACCGCCCTGCTGCGTTGCATCCAGAAAC
TGAACGATTTGAAAGGCGCCAACGAGGATCAAAACATGGGCATCGAGATC
ATCCGACGTGCGCTGCGCATGCCCTGTCTCACGATTGCCAAGAATGCTGG
CGTAGATGGTGCAATGGTGGTGGCCAAGGTGGAGATCCTCGACGGTGACT
ATGGCTACGATGCCCTGAAGGGCGAGTATGGCAACATGATCGAACGCGGT
ATTATCGATCCCACCAAGGTGGTGCGCACCGCCATCTCGGACGCAGCCGG
AGTCGCCTCTCTTCTGACCACTGCCGAGGCTGTAGTTACGGAGTTGCCGT
TGGAGGAGGCCGCCGCTGCTGGAGCGGCAGCCGGATTAGGAGCTCTCGGC
GGTATGGGCATGGGCGGAATGGGCATGTAATCCTTAATGAATTCCTTACC
ACGTAATATCCTTACCTAAATTCAAAACAAGGAAACGCTCATGGTTTGCC
ACATTCTAGCCGAGCGGTTTGCTTTACCCTTTTACAATACAATTGATGTT
AAGCATATATGTGAAATAAGGAATATTCTAGTGACAAAGAAAAAAAAAAA
AAAAAAAA

AT13565.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:53:34
Subject Length Description Subject Range Query Range Score Percent Strand
Hsp60C-RC 2097 Hsp60C-RC 55..2097 1..2043 10215 100 Plus
Hsp60C-RA 2225 Hsp60C-RA 213..2178 78..2043 9830 100 Plus
Hsp60C-RB 2033 Hsp60C-RB 134..2033 144..2043 9500 100 Plus
Hsp60C-RA 2225 Hsp60C-RA 67..145 1..79 395 100 Plus
Hsp60C-RB 2033 Hsp60C-RB 55..133 1..79 395 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:05:01
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 5668040..5669935 144..2039 9480 100 Plus
chrX 22417052 chrX 11001356..11002624 224..1492 2265 78.6 Plus
chrX 22417052 chrX 11002752..11002988 1557..1793 630 84.4 Plus
chr2L 23010047 chr2L 728499..728823 265..589 410 75.1 Plus
chr2L 23010047 chr2L 5662001..5662079 1..79 395 100 Plus
chr2L 23010047 chr2L 5667913..5667980 78..145 340 100 Plus
chr2L 23010047 chr2L 729938..730016 1701..1779 230 86.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:48:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:04:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5668943..5670842 144..2043 9500 100 Plus
X 23542271 X 11110103..11111371 224..1492 2280 78.6 Plus
X 23542271 X 11111499..11111735 1557..1793 615 84 Plus
2L 23513712 2L 728599..728929 259..589 425 75.2 Plus
2L 23513712 2L 5662903..5662981 1..79 395 100 Plus
2L 23513712 2L 5668816..5668883 78..145 340 100 Plus
2L 23513712 2L 730044..730122 1701..1779 230 86.1 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:12:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5668943..5670842 144..2043 9500 100 Plus
X 23527363 X 11118201..11118591 224..614 1070 84.9 Plus
X 23527363 X 11118599..11119056 622..1079 865 79.2 Plus
X 23527363 X 11119597..11119833 1557..1793 615 83.9 Plus
X 23527363 X 11119279..11119469 1302..1492 550 85.8 Plus
2L 23513712 2L 5662903..5662981 1..79 395 100 Plus
2L 23513712 2L 5668816..5668883 78..145 340 100 Plus
2L 23513712 2L 728697..728929 357..589 340 76.3 Plus
2L 23513712 2L 730044..730122 1701..1779 230 86 Plus
2L 23513712 2L 728599..728685 259..345 150 78.1 Plus
X 23527363 X 11119125..11119219 1148..1242 145 76.8 Plus
Blast to na_te.dros performed 2019-03-16 06:05:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dnet\R1B 2038 Dnet\R1B NETR1B 2038bp 103..130 1204..1230 119 96.4 Plus

AT13565.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:06:10 Download gff for AT13565.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 5662001..5662079 1..79 100 -> Plus
chr2L 5667915..5667978 80..143 100 -> Plus
chr2L 5668040..5669935 144..2039 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:04:10 Download gff for AT13565.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp60C-RB 1..1731 150..1880 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:50:29 Download gff for AT13565.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp60C-RB 1..1731 150..1880 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:24:31 Download gff for AT13565.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp60C-RA 1..1731 150..1880 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:32:41 Download gff for AT13565.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp60C-RB 1..1731 150..1880 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:15:06 Download gff for AT13565.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp60C-RA 1..1731 150..1880 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:01:22 Download gff for AT13565.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp60C-RC 55..2093 1..2039 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:50:29 Download gff for AT13565.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp60C-RC 55..2093 1..2039 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:24:31 Download gff for AT13565.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp60C-RC 55..2093 1..2039 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:32:41 Download gff for AT13565.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp60C-RC 55..2093 1..2039 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:15:06 Download gff for AT13565.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp60C-RC 55..2093 1..2039 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:06:10 Download gff for AT13565.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5662903..5662981 1..79 100 -> Plus
2L 5668818..5668881 80..143 100 -> Plus
2L 5668943..5670838 144..2039 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:06:10 Download gff for AT13565.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5662903..5662981 1..79 100 -> Plus
2L 5668818..5668881 80..143 100 -> Plus
2L 5668943..5670838 144..2039 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:06:10 Download gff for AT13565.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5662903..5662981 1..79 100 -> Plus
2L 5668818..5668881 80..143 100 -> Plus
2L 5668943..5670838 144..2039 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:24:31 Download gff for AT13565.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5668818..5668881 80..143 100 -> Plus
arm_2L 5662903..5662981 1..79 100 -> Plus
arm_2L 5668943..5670838 144..2039 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:12:57 Download gff for AT13565.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5668943..5670838 144..2039 100   Plus
2L 5662903..5662981 1..79 100 -> Plus
2L 5668818..5668881 80..143 100 -> Plus

AT13565.hyp Sequence

Translation from 149 to 1879

> AT13565.hyp
MMRMFRYTNTLQRTAKISHVLWARNYAKDVRFGPEVRAMMLQGVDVLADA
VAVTMGPKGRNVIIEQSWGSPKITKDGVTVAKSIALKDKFQNIGAKLVQD
VANNTNEEAGDGTTTATVLARAIAKEGFEKISRGASPVEIRRGVMLAIET
VKDNLRRLSRPVNTPEEICQVATISANGDKSVGNLISEAIKKVGRDGVIT
VKDGKTLCDELEVIEGMKFDRGYISPYFINTSKGAKVEFQDALLLFCEKK
IKSAPSIVPALELANAQRKPLVIIAEDLEAEALSTLVVNRLKVGLQVCAV
KAPGFGDNRKENLMDMAVATGGIVFGDEANMVRLEDIKMSDFGRVGEVVV
SKDDTMLLKGKGQKAEVEKRVEGLREAIKESTSSYEKEKMQERLARLSSG
VALLRVGGSSDVEVSEKKDRVIDALNATRAAVEEGIVPGGGTALLRCIQK
LNDLKGANEDQNMGIEIIRRALRMPCLTIAKNAGVDGAMVVAKVEILDGD
YGYDALKGEYGNMIERGIIDPTKVVRTAISDAAGVASLLTTAEAVVTELP
LEEAAAAGAAAGLGALGGMGMGGMGM*

AT13565.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:09:04
Subject Length Description Subject Range Query Range Score Percent Strand
Hsp60C-PB 576 CG7235-PB 1..576 1..576 2856 100 Plus
Hsp60C-PC 576 CG7235-PC 1..576 1..576 2856 100 Plus
Hsp60C-PA 576 CG7235-PA 1..576 1..576 2856 100 Plus
Hsp60-PB 573 CG12101-PB 1..570 4..575 2325 81.2 Plus
Hsp60-PA 573 CG12101-PA 1..570 4..575 2325 81.2 Plus

AT13565.pep Sequence

Translation from 149 to 1879

> AT13565.pep
MMRMFRYTNTLQRTAKISHVLWARNYAKDVRFGPEVRAMMLQGVDVLADA
VAVTMGPKGRNVIIEQSWGSPKITKDGVTVAKSIALKDKFQNIGAKLVQD
VANNTNEEAGDGTTTATVLARAIAKEGFEKISRGASPVEIRRGVMLAIET
VKDNLRRLSRPVNTPEEICQVATISANGDKSVGNLISEAIKKVGRDGVIT
VKDGKTLCDELEVIEGMKFDRGYISPYFINTSKGAKVEFQDALLLFCEKK
IKSAPSIVPALELANAQRKPLVIIAEDLEAEALSTLVVNRLKVGLQVCAV
KAPGFGDNRKENLMDMAVATGGIVFGDEANMVRLEDIKMSDFGRVGEVVV
SKDDTMLLKGKGQKAEVEKRVEGLREAIKESTSSYEKEKMQERLARLSSG
VALLRVGGSSDVEVSEKKDRVIDALNATRAAVEEGIVPGGGTALLRCIQK
LNDLKGANEDQNMGIEIIRRALRMPCLTIAKNAGVDGAMVVAKVEILDGD
YGYDALKGEYGNMIERGIIDPTKVVRTAISDAAGVASLLTTAEAVVTELP
LEEAAAAGAAAGLGALGGMGMGGMGM*

AT13565.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:56:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15575-PA 625 GF15575-PA 50..604 1..553 2639 91 Plus
Dana\GF20294-PA 573 GF20294-PA 1..550 4..554 2363 81.9 Plus
Dana\GF20641-PA 651 GF20641-PA 1..543 4..548 1757 61.4 Plus
Dana\GF21637-PA 560 GF21637-PA 14..542 24..552 1151 44.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:56:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25088-PA 577 GG25088-PA 1..577 1..576 2891 96.5 Plus
Dere\GG18391-PA 573 GG18391-PA 1..551 4..555 2383 82.2 Plus
Dere\GG24737-PA 651 GG24737-PA 12..543 18..548 1714 61.1 Plus
Dere\GG10196-PA 560 GG10196-PA 14..540 24..550 1164 44.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:56:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11038-PA 579 GH11038-PA 1..553 1..554 2527 87.9 Plus
Dgri\GH17925-PA 573 GH17925-PA 1..551 4..555 2367 81.5 Plus
Dgri\GH11219-PA 626 GH11219-PA 1..592 4..575 1668 57.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:02
Subject Length Description Subject Range Query Range Score Percent Strand
Hsp60C-PB 576 CG7235-PB 1..576 1..576 2856 100 Plus
Hsp60C-PC 576 CG7235-PC 1..576 1..576 2856 100 Plus
Hsp60C-PA 576 CG7235-PA 1..576 1..576 2856 100 Plus
Hsp60A-PB 573 CG12101-PB 1..570 4..575 2325 81.2 Plus
Hsp60A-PA 573 CG12101-PA 1..570 4..575 2325 81.2 Plus
Hsp60B-PA 648 CG2830-PA 16..596 22..575 1714 59 Plus
Hsp60D-PB 558 CG16954-PB 14..538 24..550 1120 44.3 Plus
Hsp60D-PA 558 CG16954-PA 14..538 24..550 1120 44.3 Plus
CCT5-PB 512 CG8439-PB 2..439 34..485 184 22.1 Plus
CCT5-PA 542 CG8439-PA 45..469 47..485 182 22.3 Plus
CCT4-PA 533 CG5525-PA 18..531 28..547 172 20 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:56:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17556-PA 585 GI17556-PA 1..558 1..554 2552 88.4 Plus
Dmoj\GI16304-PA 573 GI16304-PA 1..551 4..555 2357 81 Plus
Dmoj\GI21603-PA 638 GI21603-PA 1..544 4..549 1748 61.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:56:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26372-PA 579 GL26372-PA 3..554 1..553 2285 78.7 Plus
Dper\GL18870-PA 611 GL18870-PA 1..578 4..575 1680 56.7 Plus
Dper\GL25699-PA 564 GL25699-PA 18..542 24..548 1203 45.1 Plus
Dper\GL22976-PA 492 GL22976-PA 14..483 73..541 970 44.6 Plus
Dper\GL27099-PA 1457 GL27099-PA 1342..1435 462..555 420 81.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:56:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28835-PA 577 GA28835-PA 3..552 1..553 2517 86.5 Plus
Dpse\GA22684-PA 573 GA22684-PA 1..551 4..555 2369 81.5 Plus
Dpse\GA25838-PA 634 GA25838-PA 16..543 22..549 1688 59.7 Plus
Dpse\GA14234-PA 564 GA14234-PA 18..542 24..548 1194 44.7 Plus
Dpse\GA22285-PA 492 GA22285-PA 14..483 73..541 956 44 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:56:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18564-PA 576 GM18564-PA 1..576 1..576 2949 98.8 Plus
Dsec\GM11458-PA 858 GM11458-PA 1..458 4..462 1965 81.7 Plus
Dsec\GM16759-PA 651 GM16759-PA 12..543 18..548 1728 61.7 Plus
Dsec\GM25499-PA 322 GM25499-PA 3..302 250..550 644 44.9 Plus
Dsec\GM25488-PA 219 GM25488-PA 10..207 22..216 429 43.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:56:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23355-PA 576 GD23355-PA 1..576 1..576 2944 98.6 Plus
Dsim\GD17003-PA 573 GD17003-PA 1..551 4..555 2377 82.1 Plus
Dsim\GD23041-PA 651 GD23041-PA 1..543 4..548 1712 60.3 Plus
Dsim\GD22056-PA 558 GD22056-PA 10..538 22..550 1089 43.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:56:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15562-PA 583 GJ15562-PA 1..557 1..554 2550 89.1 Plus
Dvir\GJ15640-PA 573 GJ15640-PA 1..551 4..555 2381 81.5 Plus
Dvir\GJ17770-PA 634 GJ17770-PA 1..544 4..549 1741 61.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:56:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14688-PA 582 GK14688-PA 1..554 1..553 2542 87.5 Plus
Dwil\GK16370-PA 575 GK16370-PA 1..553 4..555 2385 81.9 Plus
Dwil\GK23787-PA 639 GK23787-PA 1..557 4..561 1731 59.9 Plus
Dwil\GK15276-PA 558 GK15276-PA 4..537 16..549 1170 42.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:56:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25548-PA 577 GE25548-PA 1..577 1..576 2928 97.9 Plus
Dyak\GE15908-PA 573 GE15908-PA 1..551 4..555 2378 82.1 Plus
Dyak\GE17001-PA 657 GE17001-PA 12..543 18..548 1706 60.9 Plus
Dyak\GE11569-PA 558 GE11569-PA 14..538 24..550 1146 45.3 Plus