Clone AT13606 Report

Search the DGRC for AT13606

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:136
Well:6
Vector:pOTB7
Associated Gene/Transcriptlaf-RA
Protein status:AT13606.pep: gold
Preliminary Size:2091
Sequenced Size:2430

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14660 2002-01-01 Sim4 clustering to Release 2
CG14660 2002-01-09 Blastp of sequenced clone
CG14660 2003-01-01 Sim4 clustering to Release 3
laf 2008-04-29 Release 5.5 accounting
laf 2008-08-15 Release 5.9 accounting
laf 2008-12-18 5.12 accounting

Clone Sequence Records

AT13606.complete Sequence

2430 bp (2430 high quality bases) assembled on 2002-01-09

GenBank Submission: AY075195

> AT13606.complete
CAGTTCCGTCCCCCATTCCCCTGCAGCTACACCCAAGAAGATCTCTGATT
AGAAATGTCCCGTCATGGTCAGCACTACATAAGCGCCAGAAGTGTGTCGG
CAAAGGACCTGGACGATTCTGAATCGGGAGGAGATAAGAGTAAGAGTAAG
GAACGAGTAAGGAACTTAGTTCTCAAGAAGGTGTGCCGCGGACGGAACGT
CCAGGACTCTCCAGGATACAGGGGAAAGGCAATGTTGAACTGCTCTAATA
GGACAAGAAAATACAGCAAGCATTCAAAAGACAATCTCCATTCGGGAAAT
GAGGACGGAGGTATGCCCAAGGACACAGAGTACATTTCAAGTGATCACGA
TGACTCGCCGTCCTGGTCTCAGCAGAGCCTGCTATCCAGTGATCGTTCCA
AAAGCTATAGTCAGATATGTAGCGAAATCTTGGAAGAGTCTAAGGAACGA
CAAGAGAAGGCAGAGTGCGCTTTTCGCGTCTACAATATAAACAGATCCAA
GCTGCGTAGGTCCCATCAACAATCCTTGTCCAGGGGTCCGGGAAGTGGGA
GTTATGGGAGCAGCATGGCCTCAGAGTATTCAAGTAAATCGGAAGCAGGC
TACCAGGACTATGACAGTCCATCGACAGATCCTTCACGAGAACACGTTCA
AATGGCAAATGTGGCAAATATAGATAAGTGGACTAGACCAAAACAGTTCA
AGGTAGAGTCATATAAAATGGAAATAAAAGAAAGGCCCAATTACCGCAAA
ACTCAAGAAGTAAGCCACTCGTATTCATGTCCATTGGAAAGTAGGATTTC
AAAAGGTTCTTTAGTTACCAGGCACAGAGCAAGATCATGCGTCTGCGCAC
AAGAGTCCTCGGCTTGTAGCCTTTGCACTGCCCACTCCAGATCAGGAAAG
CACCATTCCGAGGGCTGCGACGCAGAGGTGATTGATGGACCCGATTATCC
TGTAGACTGCAGAAGTGACATTCCTACAACTGCGACATCGCAATCGCGCT
CACAAAGAGATTATCTTTCGAGCTGCTGCACACGCCATCGTCATCATCCT
CATTATCATCGCCAGAGGAGTGTGCCAAAGACATATCAAGATCGTGGAAA
TAGTCCCATTAACATCAAGACGAGGCGCAAGACGCGCGACTACCAGGAAC
CTCACTTCGCATTTCGCACCGAGAAAGTGGAGGCGGCGGTTCAGCTCAGC
AGATCAAGTGCCTCCATTGGGGTGCAATATCCCAGTCAAGACGAGAACGC
GGATTGGACTGATTGGACTCCAGATACAACACAGGGTGACCGACAGTTCA
AAGGTCATGATGGCGATTGCTTGAGATCAACAGAAAAAAAACGGTCTATA
TCTAATGAGCAAAGTCCAATTACGCTAAGGAATACAAATGCTAAGGATGT
CGACATACCTGATTGTTTTGGATCATTTGCCATGAATAAGCATCTTAGTG
TCATTACCGAGGATGCATCTCAACACCACAAAGATCCAGATGAAGATATG
ATCGATAGTCAGCTAAGTAATTCCGTTCTTCTCGAGACCTACGACGAAGG
TGAGAAATATGCTTATAGTTATCAGTACAGCTACAAACCCGAGATATGCA
ATAATAACCAGTTCGTTTCCGATGAATCTGATCTTAAGGTCTCCAGTAAG
GAAGGCTATCAAATGGATCAAGAAGACTATGTAATGGATAAGCAAGAGCT
TGTCCATGAAGGTGGATCAGATGCATCTTTGAGTGAAGTAGCCAAGTCGA
AAAGCTTTCTAAGCCTTAAGATATACGACGCTGACGAAGCCCTGATGGAA
ATTCCAGAGGACTTCGAGGGCCCTGCAATAGTTCTGGATGATGATGCCGA
CTTTTTGGACATCACACTGACCGACGACGAGGAGAAGATTCGGGCCAAGT
TGATGGCAGCGGCACTCACTACCAGAAAGACTACCTCCTCCATCAGCCCC
AATATTAGTTTAAGAACCCGTTCGCCCATAGAGCCGAGTAGTCTGAGCTA
TAAGCCCAATGTTATCTTTACTCGTCGCTCGGAGGTGATCAAAGATAACT
ATACTCCCCGTCCGGACGATCGCGTTGCCCTGCTTGCAGAGAAATTCCTC
CAAAGCTTTAGCGAATCTGCCCCTAATGATTATGGATGGAAGCCCTCTAA
ACAGGAGGTGACCTCTGCAGTCTCTATTTCACATTTGTTCAACGAGAATG
GGGTCACCAGAAGGGGAGGCGATACTCCACTTTGCGGGGACCGTCAGCTG
CTGTCCGTGGAATTCAACAGAAAGCTGCAACGTCAGCTCAAAGTGATTGT
AGAGAGTTTCCAATGAAATTCCTTGGATCTTATATTTTCTATTTGCAATT
GCGTGTCAGAAAATACATAGCGGAATTCGTTGACCGCCTATGGAAGTTCT
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

AT13606.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:32:46
Subject Length Description Subject Range Query Range Score Percent Strand
laf-RA 2467 laf-RA 67..2467 1..2401 12005 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:18:20
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 702504..704122 1675..57 8095 100 Minus
chr3R 27901430 chr3R 701701..702427 2401..1675 3635 100 Minus
chr3R 27901430 chr3R 704173..704229 57..1 285 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:48:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:18:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4876808..4878426 1675..57 8095 100 Minus
3R 32079331 3R 4876003..4876731 2403..1675 3645 100 Minus
3R 32079331 3R 4878477..4878533 57..1 285 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:00:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 4617639..4619257 1675..57 8095 100 Minus
3R 31820162 3R 4616834..4617562 2403..1675 3645 100 Minus
3R 31820162 3R 4619308..4619364 57..1 285 100 Minus
Blast to na_te.dros performed 2019-03-15 15:18:19
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 7137..7248 1549..1434 129 63 Minus
Dsil\Loa 7779 Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). 7662..7723 512..575 117 67.2 Plus

AT13606.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:19:17 Download gff for AT13606.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 701701..702427 1675..2401 100 <- Minus
chr3R 702505..704121 58..1674 100 <- Minus
chr3R 704173..704229 1..57 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:04:16 Download gff for AT13606.complete
Subject Subject Range Query Range Percent Splice Strand
laf-RA 1..2262 55..2316 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:54:20 Download gff for AT13606.complete
Subject Subject Range Query Range Percent Splice Strand
laf-RA 1..2262 55..2316 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:22:54 Download gff for AT13606.complete
Subject Subject Range Query Range Percent Splice Strand
laf-RA 1..2262 55..2316 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:19:21 Download gff for AT13606.complete
Subject Subject Range Query Range Percent Splice Strand
laf-RA 1..2262 55..2316 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:01:14 Download gff for AT13606.complete
Subject Subject Range Query Range Percent Splice Strand
laf-RA 1..2262 55..2316 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:17:43 Download gff for AT13606.complete
Subject Subject Range Query Range Percent Splice Strand
laf-RA 1..2401 1..2401 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:54:20 Download gff for AT13606.complete
Subject Subject Range Query Range Percent Splice Strand
laf-RA 1..2401 1..2401 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:22:54 Download gff for AT13606.complete
Subject Subject Range Query Range Percent Splice Strand
laf-RA 1..2401 1..2401 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:19:21 Download gff for AT13606.complete
Subject Subject Range Query Range Percent Splice Strand
laf-RA 1..2401 1..2401 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:01:14 Download gff for AT13606.complete
Subject Subject Range Query Range Percent Splice Strand
laf-RA 1..2401 1..2401 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:19:17 Download gff for AT13606.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4876005..4876731 1675..2401 100 <- Minus
3R 4876809..4878425 58..1674 100 <- Minus
3R 4878477..4878533 1..57 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:19:17 Download gff for AT13606.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4876005..4876731 1675..2401 100 <- Minus
3R 4876809..4878425 58..1674 100 <- Minus
3R 4878477..4878533 1..57 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:19:17 Download gff for AT13606.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4876005..4876731 1675..2401 100 <- Minus
3R 4876809..4878425 58..1674 100 <- Minus
3R 4878477..4878533 1..57 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:22:54 Download gff for AT13606.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 701727..702453 1675..2401 100 <- Minus
arm_3R 702531..704147 58..1674 100 <- Minus
arm_3R 704199..704255 1..57 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:53:42 Download gff for AT13606.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4616836..4617562 1675..2401 100 <- Minus
3R 4617640..4619256 58..1674 100 <- Minus
3R 4619308..4619364 1..57 100   Minus

AT13606.pep Sequence

Translation from 54 to 2315

> AT13606.pep
MSRHGQHYISARSVSAKDLDDSESGGDKSKSKERVRNLVLKKVCRGRNVQ
DSPGYRGKAMLNCSNRTRKYSKHSKDNLHSGNEDGGMPKDTEYISSDHDD
SPSWSQQSLLSSDRSKSYSQICSEILEESKERQEKAECAFRVYNINRSKL
RRSHQQSLSRGPGSGSYGSSMASEYSSKSEAGYQDYDSPSTDPSREHVQM
ANVANIDKWTRPKQFKVESYKMEIKERPNYRKTQEVSHSYSCPLESRISK
GSLVTRHRARSCVCAQESSACSLCTAHSRSGKHHSEGCDAEVIDGPDYPV
DCRSDIPTTATSQSRSQRDYLSSCCTRHRHHPHYHRQRSVPKTYQDRGNS
PINIKTRRKTRDYQEPHFAFRTEKVEAAVQLSRSSASIGVQYPSQDENAD
WTDWTPDTTQGDRQFKGHDGDCLRSTEKKRSISNEQSPITLRNTNAKDVD
IPDCFGSFAMNKHLSVITEDASQHHKDPDEDMIDSQLSNSVLLETYDEGE
KYAYSYQYSYKPEICNNNQFVSDESDLKVSSKEGYQMDQEDYVMDKQELV
HEGGSDASLSEVAKSKSFLSLKIYDADEALMEIPEDFEGPAIVLDDDADF
LDITLTDDEEKIRAKLMAAALTTRKTTSSISPNISLRTRSPIEPSSLSYK
PNVIFTRRSEVIKDNYTPRPDDRVALLAEKFLQSFSESAPNDYGWKPSKQ
EVTSAVSISHLFNENGVTRRGGDTPLCGDRQLLSVEFNRKLQRQLKVIVE
SFQ*

AT13606.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:33:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16082-PA 913 GF16082-PA 730..913 566..753 379 55.2 Plus
Dana\GF16082-PA 913 GF16082-PA 38..506 2..397 265 31.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:33:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11289-PA 738 GG11289-PA 17..738 37..753 2250 68.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:12:17
Subject Length Description Subject Range Query Range Score Percent Strand
laf-PA 753 CG14660-PA 1..753 1..753 3949 100 Plus
laf-PB 755 CG14660-PB 1..755 1..753 3936 99.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:33:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22215-PA 651 GL22215-PA 487..651 565..753 157 31.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:33:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27421-PC 650 GA27421-PC 486..650 565..753 177 34.5 Plus
Dpse\GA27421-PB 594 GA27421-PB 430..594 565..753 176 34.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:33:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10671-PA 637 GM10671-PA 152..637 268..753 1889 78.4 Plus
Dsec\GM10671-PA 637 GM10671-PA 1..181 1..198 738 78.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:33:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19646-PA 748 GD19646-PA 1..748 1..753 3039 80.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:33:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10110-PA 1068 GJ10110-PA 870..1068 570..753 209 34.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:33:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14055-PA 651 GK14055-PA 468..651 569..753 277 41 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:33:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25323-PA 729 GE25323-PA 1..729 1..753 2326 68.3 Plus

AT13606.hyp Sequence

Translation from 54 to 2315

> AT13606.hyp
MSRHGQHYISARSVSAKDLDDSESGGDKSKSKERVRNLVLKKVCRGRNVQ
DSPGYRGKAMLNCSNRTRKYSKHSKDNLHSGNEDGGMPKDTEYISSDHDD
SPSWSQQSLLSSDRSKSYSQICSEILEESKERQEKAECAFRVYNINRSKL
RRSHQQSLSRGPGSGSYGSSMASEYSSKSEAGYQDYDSPSTDPSREHVQM
ANVANIDKWTRPKQFKVESYKMEIKERPNYRKTQEVSHSYSCPLESRISK
GSLVTRHRARSCVCAQESSACSLCTAHSRSGKHHSEGCDAEVIDGPDYPV
DCRSDIPTTATSQSRSQRDYLSSCCTRHRHHPHYHRQRSVPKTYQDRGNS
PINIKTRRKTRDYQEPHFAFRTEKVEAAVQLSRSSASIGVQYPSQDENAD
WTDWTPDTTQGDRQFKGHDGDCLRSTEKKRSISNEQSPITLRNTNAKDVD
IPDCFGSFAMNKHLSVITEDASQHHKDPDEDMIDSQLSNSVLLETYDEGE
KYAYSYQYSYKPEICNNNQFVSDESDLKVSSKEGYQMDQEDYVMDKQELV
HEGGSDASLSEVAKSKSFLSLKIYDADEALMEIPEDFEGPAIVLDDDADF
LDITLTDDEEKIRAKLMAAALTTRKTTSSISPNISLRTRSPIEPSSLSYK
PNVIFTRRSEVIKDNYTPRPDDRVALLAEKFLQSFSESAPNDYGWKPSKQ
EVTSAVSISHLFNENGVTRRGGDTPLCGDRQLLSVEFNRKLQRQLKVIVE
SFQ*

AT13606.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:09:14
Subject Length Description Subject Range Query Range Score Percent Strand
laf-PA 753 CG14660-PA 1..753 1..753 3949 100 Plus
laf-PB 755 CG14660-PB 1..755 1..753 3936 99.7 Plus