BDGP Sequence Production Resources |
Search the DGRC for AT13606
Library: | AT |
Tissue Source: | Drosophila melanogaster adult testes |
Created by: | Ling Hong |
Date Registered: | 2000-06-08 |
Comments: | Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7 |
Original Plate Number: | 136 |
Well: | 6 |
Vector: | pOTB7 |
Associated Gene/Transcript | laf-RA |
Protein status: | AT13606.pep: gold |
Preliminary Size: | 2091 |
Sequenced Size: | 2430 |
Gene | Date | Evidence |
---|---|---|
CG14660 | 2002-01-01 | Sim4 clustering to Release 2 |
CG14660 | 2002-01-09 | Blastp of sequenced clone |
CG14660 | 2003-01-01 | Sim4 clustering to Release 3 |
laf | 2008-04-29 | Release 5.5 accounting |
laf | 2008-08-15 | Release 5.9 accounting |
laf | 2008-12-18 | 5.12 accounting |
2430 bp (2430 high quality bases) assembled on 2002-01-09
GenBank Submission: AY075195
> AT13606.complete CAGTTCCGTCCCCCATTCCCCTGCAGCTACACCCAAGAAGATCTCTGATT AGAAATGTCCCGTCATGGTCAGCACTACATAAGCGCCAGAAGTGTGTCGG CAAAGGACCTGGACGATTCTGAATCGGGAGGAGATAAGAGTAAGAGTAAG GAACGAGTAAGGAACTTAGTTCTCAAGAAGGTGTGCCGCGGACGGAACGT CCAGGACTCTCCAGGATACAGGGGAAAGGCAATGTTGAACTGCTCTAATA GGACAAGAAAATACAGCAAGCATTCAAAAGACAATCTCCATTCGGGAAAT GAGGACGGAGGTATGCCCAAGGACACAGAGTACATTTCAAGTGATCACGA TGACTCGCCGTCCTGGTCTCAGCAGAGCCTGCTATCCAGTGATCGTTCCA AAAGCTATAGTCAGATATGTAGCGAAATCTTGGAAGAGTCTAAGGAACGA CAAGAGAAGGCAGAGTGCGCTTTTCGCGTCTACAATATAAACAGATCCAA GCTGCGTAGGTCCCATCAACAATCCTTGTCCAGGGGTCCGGGAAGTGGGA GTTATGGGAGCAGCATGGCCTCAGAGTATTCAAGTAAATCGGAAGCAGGC TACCAGGACTATGACAGTCCATCGACAGATCCTTCACGAGAACACGTTCA AATGGCAAATGTGGCAAATATAGATAAGTGGACTAGACCAAAACAGTTCA AGGTAGAGTCATATAAAATGGAAATAAAAGAAAGGCCCAATTACCGCAAA ACTCAAGAAGTAAGCCACTCGTATTCATGTCCATTGGAAAGTAGGATTTC AAAAGGTTCTTTAGTTACCAGGCACAGAGCAAGATCATGCGTCTGCGCAC AAGAGTCCTCGGCTTGTAGCCTTTGCACTGCCCACTCCAGATCAGGAAAG CACCATTCCGAGGGCTGCGACGCAGAGGTGATTGATGGACCCGATTATCC TGTAGACTGCAGAAGTGACATTCCTACAACTGCGACATCGCAATCGCGCT CACAAAGAGATTATCTTTCGAGCTGCTGCACACGCCATCGTCATCATCCT CATTATCATCGCCAGAGGAGTGTGCCAAAGACATATCAAGATCGTGGAAA TAGTCCCATTAACATCAAGACGAGGCGCAAGACGCGCGACTACCAGGAAC CTCACTTCGCATTTCGCACCGAGAAAGTGGAGGCGGCGGTTCAGCTCAGC AGATCAAGTGCCTCCATTGGGGTGCAATATCCCAGTCAAGACGAGAACGC GGATTGGACTGATTGGACTCCAGATACAACACAGGGTGACCGACAGTTCA AAGGTCATGATGGCGATTGCTTGAGATCAACAGAAAAAAAACGGTCTATA TCTAATGAGCAAAGTCCAATTACGCTAAGGAATACAAATGCTAAGGATGT CGACATACCTGATTGTTTTGGATCATTTGCCATGAATAAGCATCTTAGTG TCATTACCGAGGATGCATCTCAACACCACAAAGATCCAGATGAAGATATG ATCGATAGTCAGCTAAGTAATTCCGTTCTTCTCGAGACCTACGACGAAGG TGAGAAATATGCTTATAGTTATCAGTACAGCTACAAACCCGAGATATGCA ATAATAACCAGTTCGTTTCCGATGAATCTGATCTTAAGGTCTCCAGTAAG GAAGGCTATCAAATGGATCAAGAAGACTATGTAATGGATAAGCAAGAGCT TGTCCATGAAGGTGGATCAGATGCATCTTTGAGTGAAGTAGCCAAGTCGA AAAGCTTTCTAAGCCTTAAGATATACGACGCTGACGAAGCCCTGATGGAA ATTCCAGAGGACTTCGAGGGCCCTGCAATAGTTCTGGATGATGATGCCGA CTTTTTGGACATCACACTGACCGACGACGAGGAGAAGATTCGGGCCAAGT TGATGGCAGCGGCACTCACTACCAGAAAGACTACCTCCTCCATCAGCCCC AATATTAGTTTAAGAACCCGTTCGCCCATAGAGCCGAGTAGTCTGAGCTA TAAGCCCAATGTTATCTTTACTCGTCGCTCGGAGGTGATCAAAGATAACT ATACTCCCCGTCCGGACGATCGCGTTGCCCTGCTTGCAGAGAAATTCCTC CAAAGCTTTAGCGAATCTGCCCCTAATGATTATGGATGGAAGCCCTCTAA ACAGGAGGTGACCTCTGCAGTCTCTATTTCACATTTGTTCAACGAGAATG GGGTCACCAGAAGGGGAGGCGATACTCCACTTTGCGGGGACCGTCAGCTG CTGTCCGTGGAATTCAACAGAAAGCTGCAACGTCAGCTCAAAGTGATTGT AGAGAGTTTCCAATGAAATTCCTTGGATCTTATATTTTCTATTTGCAATT GCGTGTCAGAAAATACATAGCGGAATTCGTTGACCGCCTATGGAAGTTCT GAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
laf-RA | 2467 | laf-RA | 67..2467 | 1..2401 | 12005 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 702504..704122 | 1675..57 | 8095 | 100 | Minus |
chr3R | 27901430 | chr3R | 701701..702427 | 2401..1675 | 3635 | 100 | Minus |
chr3R | 27901430 | chr3R | 704173..704229 | 57..1 | 285 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 4617639..4619257 | 1675..57 | 8095 | 100 | Minus |
3R | 31820162 | 3R | 4616834..4617562 | 2403..1675 | 3645 | 100 | Minus |
3R | 31820162 | 3R | 4619308..4619364 | 57..1 | 285 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TART-A | 13424 | TART-A 13424bp | 7137..7248 | 1549..1434 | 129 | 63 | Minus |
Dsil\Loa | 7779 | Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). | 7662..7723 | 512..575 | 117 | 67.2 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 701701..702427 | 1675..2401 | 100 | <- | Minus |
chr3R | 702505..704121 | 58..1674 | 100 | <- | Minus |
chr3R | 704173..704229 | 1..57 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
laf-RA | 1..2262 | 55..2316 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
laf-RA | 1..2262 | 55..2316 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
laf-RA | 1..2262 | 55..2316 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
laf-RA | 1..2262 | 55..2316 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
laf-RA | 1..2262 | 55..2316 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
laf-RA | 1..2401 | 1..2401 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
laf-RA | 1..2401 | 1..2401 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
laf-RA | 1..2401 | 1..2401 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
laf-RA | 1..2401 | 1..2401 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
laf-RA | 1..2401 | 1..2401 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 4876005..4876731 | 1675..2401 | 100 | <- | Minus |
3R | 4876809..4878425 | 58..1674 | 100 | <- | Minus |
3R | 4878477..4878533 | 1..57 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 4876005..4876731 | 1675..2401 | 100 | <- | Minus |
3R | 4876809..4878425 | 58..1674 | 100 | <- | Minus |
3R | 4878477..4878533 | 1..57 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 4876005..4876731 | 1675..2401 | 100 | <- | Minus |
3R | 4876809..4878425 | 58..1674 | 100 | <- | Minus |
3R | 4878477..4878533 | 1..57 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 701727..702453 | 1675..2401 | 100 | <- | Minus |
arm_3R | 702531..704147 | 58..1674 | 100 | <- | Minus |
arm_3R | 704199..704255 | 1..57 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 4616836..4617562 | 1675..2401 | 100 | <- | Minus |
3R | 4617640..4619256 | 58..1674 | 100 | <- | Minus |
3R | 4619308..4619364 | 1..57 | 100 | Minus |
Translation from 54 to 2315
> AT13606.pep MSRHGQHYISARSVSAKDLDDSESGGDKSKSKERVRNLVLKKVCRGRNVQ DSPGYRGKAMLNCSNRTRKYSKHSKDNLHSGNEDGGMPKDTEYISSDHDD SPSWSQQSLLSSDRSKSYSQICSEILEESKERQEKAECAFRVYNINRSKL RRSHQQSLSRGPGSGSYGSSMASEYSSKSEAGYQDYDSPSTDPSREHVQM ANVANIDKWTRPKQFKVESYKMEIKERPNYRKTQEVSHSYSCPLESRISK GSLVTRHRARSCVCAQESSACSLCTAHSRSGKHHSEGCDAEVIDGPDYPV DCRSDIPTTATSQSRSQRDYLSSCCTRHRHHPHYHRQRSVPKTYQDRGNS PINIKTRRKTRDYQEPHFAFRTEKVEAAVQLSRSSASIGVQYPSQDENAD WTDWTPDTTQGDRQFKGHDGDCLRSTEKKRSISNEQSPITLRNTNAKDVD IPDCFGSFAMNKHLSVITEDASQHHKDPDEDMIDSQLSNSVLLETYDEGE KYAYSYQYSYKPEICNNNQFVSDESDLKVSSKEGYQMDQEDYVMDKQELV HEGGSDASLSEVAKSKSFLSLKIYDADEALMEIPEDFEGPAIVLDDDADF LDITLTDDEEKIRAKLMAAALTTRKTTSSISPNISLRTRSPIEPSSLSYK PNVIFTRRSEVIKDNYTPRPDDRVALLAEKFLQSFSESAPNDYGWKPSKQ EVTSAVSISHLFNENGVTRRGGDTPLCGDRQLLSVEFNRKLQRQLKVIVE SFQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16082-PA | 913 | GF16082-PA | 730..913 | 566..753 | 379 | 55.2 | Plus |
Dana\GF16082-PA | 913 | GF16082-PA | 38..506 | 2..397 | 265 | 31.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11289-PA | 738 | GG11289-PA | 17..738 | 37..753 | 2250 | 68.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
laf-PA | 753 | CG14660-PA | 1..753 | 1..753 | 3949 | 100 | Plus |
laf-PB | 755 | CG14660-PB | 1..755 | 1..753 | 3936 | 99.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22215-PA | 651 | GL22215-PA | 487..651 | 565..753 | 157 | 31.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA27421-PC | 650 | GA27421-PC | 486..650 | 565..753 | 177 | 34.5 | Plus |
Dpse\GA27421-PB | 594 | GA27421-PB | 430..594 | 565..753 | 176 | 34.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10671-PA | 637 | GM10671-PA | 152..637 | 268..753 | 1889 | 78.4 | Plus |
Dsec\GM10671-PA | 637 | GM10671-PA | 1..181 | 1..198 | 738 | 78.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19646-PA | 748 | GD19646-PA | 1..748 | 1..753 | 3039 | 80.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10110-PA | 1068 | GJ10110-PA | 870..1068 | 570..753 | 209 | 34.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14055-PA | 651 | GK14055-PA | 468..651 | 569..753 | 277 | 41 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25323-PA | 729 | GE25323-PA | 1..729 | 1..753 | 2326 | 68.3 | Plus |
Translation from 54 to 2315
> AT13606.hyp MSRHGQHYISARSVSAKDLDDSESGGDKSKSKERVRNLVLKKVCRGRNVQ DSPGYRGKAMLNCSNRTRKYSKHSKDNLHSGNEDGGMPKDTEYISSDHDD SPSWSQQSLLSSDRSKSYSQICSEILEESKERQEKAECAFRVYNINRSKL RRSHQQSLSRGPGSGSYGSSMASEYSSKSEAGYQDYDSPSTDPSREHVQM ANVANIDKWTRPKQFKVESYKMEIKERPNYRKTQEVSHSYSCPLESRISK GSLVTRHRARSCVCAQESSACSLCTAHSRSGKHHSEGCDAEVIDGPDYPV DCRSDIPTTATSQSRSQRDYLSSCCTRHRHHPHYHRQRSVPKTYQDRGNS PINIKTRRKTRDYQEPHFAFRTEKVEAAVQLSRSSASIGVQYPSQDENAD WTDWTPDTTQGDRQFKGHDGDCLRSTEKKRSISNEQSPITLRNTNAKDVD IPDCFGSFAMNKHLSVITEDASQHHKDPDEDMIDSQLSNSVLLETYDEGE KYAYSYQYSYKPEICNNNQFVSDESDLKVSSKEGYQMDQEDYVMDKQELV HEGGSDASLSEVAKSKSFLSLKIYDADEALMEIPEDFEGPAIVLDDDADF LDITLTDDEEKIRAKLMAAALTTRKTTSSISPNISLRTRSPIEPSSLSYK PNVIFTRRSEVIKDNYTPRPDDRVALLAEKFLQSFSESAPNDYGWKPSKQ EVTSAVSISHLFNENGVTRRGGDTPLCGDRQLLSVEFNRKLQRQLKVIVE SFQ*