Clone AT13609 Report

Search the DGRC for AT13609

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:136
Well:9
Vector:pOTB7
Associated Gene/TranscriptCG17005-RB
Protein status:AT13609.pep: gold
Preliminary Size:1809
Sequenced Size:1936

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17005 2002-01-01 Sim4 clustering to Release 2
CG17005 2002-01-09 Blastp of sequenced clone
CG17005 2003-01-01 Sim4 clustering to Release 3
CG17005 2008-04-29 Release 5.5 accounting
CG17005 2008-08-15 Release 5.9 accounting
CG17005 2008-12-18 5.12 accounting

Clone Sequence Records

AT13609.complete Sequence

1936 bp (1936 high quality bases) assembled on 2002-01-09

GenBank Submission: AY075196

> AT13609.complete
AATAATTTAGTGAACAGATATTTAACTGCAGAAGCATATATATTTTATAG
TTGAAGATGGAGGAAGAACCCTTAGTTTCCCCTTCGGTTCCAATTCGAAA
GCCATGTGGTACGTTTAAGCCTCCGGCCATCTACCAGAAGCTGATGATTG
ACAATCTGACTGTCATTCGACCGCCCATCCTGAAGATCTTCTACTGGGAG
AGCTTTGAAATAACGGGCTTGAATCGGAAGCTGCGTTCGAACCGCATAGA
GCATGAGCATACATTCAAGATACCTATTCGCCAGATCCACAGTCATCCCC
TGAAAATGGTCTTCTGGATCCGTAATCTATCGGCCGCGAACGCCAAGTTG
ACTCTAAAGCGTATCCAAAACTGTCAATGCCAGCCGCAGCAGACCCAAGT
CGGATTCAATCAGTTCCGCCAGCTCTTCCACTGCCCACATCGCAGACTGC
TCCACATCAGCCAGGAGATCCTGTCTATCAATCCTGATGAGGTGGTGGCC
CTCACCGTAACGGCCTATTTCTTCTTGTACGGCGAACACCTGCTCACCTA
CGAAGTTCACACTGAAGACAATCGCAAGTTTCTGTGGCATTTTCATCTGG
AGATCTCGTCCTTTGACCCCGAAAAGTGTCTACTCACTAAAGAGCTGCTG
CCGGTAAACATAAAAAGCTTTTACCATATAACGCAGCCGTTGTGGGTCCA
AAATATCACGATGTCACACTTGTCATTCTCGTTTGCTTCAAGGGATCGTG
GCCTCAAGCTGCTCAATATGAATCTCACCGTGCCTCGACAGAGTGTGTGG
CCCCTCCTGGTGGACTATCGACCCTTGGACTACGAAAATGAGGCGGAAAT
TGTCTTAACATATGAAAATACCAAGGCTCGCTACAAAATTAAAGCACGAG
GCGTGCTGACTGACGAGAAGGAGCAGACGGACATGCCCTTGAAGGATCGG
GAATGCGTCGATTTCCTGCACGTCATCTACCCTAATAGAGTAAACTTTGA
AATCTGCCTGCGTGAAGATCGGACGCAGCTCGTCAATGTCCATAACTACG
GACAGCAGTGCATGGAGTTTCGGTGGCAGAGCTACATAATCAACGATTTT
TTTGCGGTTGTGTTCAATCCGCCTATTTTCCGCCTTAAAGGCCATCACTC
GAAGCTGTGCGAGATCAGAGTGACGGTGTTCGACCGACTGGTCCACTTCC
GCCGCATTCCCATCGTGCTGGAGGTGCACCGCATTCTCGATCGCGCCACC
ATCATAGCCAAGCAGGAGCTGGAGGAGGTGGAGTCCATCGACGATCCCAA
ATGGAAAGAGGACAGCTACGTGGAGCACGTCTATCTGCACCTGAACATCC
GCACCAATATTAAGCCCGCTCTGGACTCTGAGGAGCTGGAACCGGGCGAT
AGGATCGACCCCACGGCTGGACCCGAACCCTGTAGCCAAGTTGGTCCTGG
GGAAGCCAGGAGAGGCAACGGCTCGGGTGACGGTCCATCGACACCTGCAC
CGAACACCGAGGAGCAGCGCAAAGAGGCCGAGCGCAAGGAGCTGATCTCC
CGACTGGTGGCCAAGAACAAACTCAATCCCAACGAGATCATCGAGCTCAG
CATGGCCATTGATCAGCGAATAACCATTTTCGAGAAGCTATTCTGGAAGT
ACCTCAGCAAGTCCAAGTTCATGCGAATCAATGGTGAGCGCAAGCGTCAG
AAGGTGGTCAAGACCTACGAGCAAGTGGTGTCCCCGGATAAGACGACTCC
CCTGGAGGCAGCATCGGAAATTGATCGAAATCACATCATGGATCTGCTGT
CCCGACTGATGCAGGAGGCCATCAACGACTTGGCCAAGAACTGGGTCTTT
ATTCCGTCGCAGTACTACGAACGCAACCATTAGGTGTTCCCTCCGTAAAA
TAAATGCATTCTCCTGCAAAAAAAAAAAAAAAAAAA

AT13609.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:32:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG17005-RB 2204 CG17005-RB 20..1938 1..1919 9355 99.1 Plus
CG17005.a 2076 CG17005.a 236..1871 284..1919 7940 99 Plus
CG17005.a 2076 CG17005.a 20..236 1..217 1085 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:34:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 9328021..9328721 1080..1780 3325 98.3 Plus
chr2L 23010047 chr2L 9326953..9327295 217..559 1715 100 Plus
chr2L 23010047 chr2L 9327354..9327637 560..843 1390 99.3 Plus
chr2L 23010047 chr2L 9327696..9327936 841..1081 1145 98.3 Plus
chr2L 23010047 chr2L 9326685..9326901 1..217 1085 100 Plus
chr2L 23010047 chr2L 9328866..9329002 1781..1917 670 99.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:48:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9329077..9329777 1080..1780 3400 99 Plus
2L 23513712 2L 9328012..9328354 217..559 1700 99.7 Plus
2L 23513712 2L 9328413..9328696 560..843 1390 99.3 Plus
2L 23513712 2L 9328752..9328992 841..1081 1145 98.3 Plus
2L 23513712 2L 9327744..9327960 1..217 1085 100 Plus
2L 23513712 2L 9329931..9330069 1781..1919 665 98.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:00:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9329077..9329777 1080..1780 3400 99 Plus
2L 23513712 2L 9328012..9328354 217..559 1700 99.7 Plus
2L 23513712 2L 9328413..9328696 560..843 1390 99.2 Plus
2L 23513712 2L 9328752..9328992 841..1081 1145 98.3 Plus
2L 23513712 2L 9327744..9327960 1..217 1085 100 Plus
2L 23513712 2L 9329931..9330069 1781..1919 665 98.5 Plus
Blast to na_te.dros performed on 2019-03-15 11:34:33 has no hits.

AT13609.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:35:20 Download gff for AT13609.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 9327698..9327936 843..1081 98 -> Plus
chr2L 9326685..9326901 1..217 100 -> Plus
chr2L 9326954..9327295 218..559 100 -> Plus
chr2L 9327354..9327636 560..842 99 -> Plus
chr2L 9328023..9328721 1082..1780 98 -> Plus
chr2L 9328866..9329002 1781..1917 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:04:18 Download gff for AT13609.complete
Subject Subject Range Query Range Percent Splice Strand
CG17005-RB 1..1827 57..1883 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:54:21 Download gff for AT13609.complete
Subject Subject Range Query Range Percent Splice Strand
CG17005-RB 1..1827 57..1883 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:31:15 Download gff for AT13609.complete
Subject Subject Range Query Range Percent Splice Strand
CG17005-RB 1..1827 57..1883 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:19:22 Download gff for AT13609.complete
Subject Subject Range Query Range Percent Splice Strand
CG17005-RB 1..1827 57..1883 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:38:54 Download gff for AT13609.complete
Subject Subject Range Query Range Percent Splice Strand
CG17005-RB 1..1827 57..1883 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:17:44 Download gff for AT13609.complete
Subject Subject Range Query Range Percent Splice Strand
CG17005-RB 1..1917 1..1917 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:54:21 Download gff for AT13609.complete
Subject Subject Range Query Range Percent Splice Strand
CG17005-RB 1..1917 1..1917 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:31:15 Download gff for AT13609.complete
Subject Subject Range Query Range Percent Splice Strand
CG17005-RB 1..1917 1..1917 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:19:22 Download gff for AT13609.complete
Subject Subject Range Query Range Percent Splice Strand
CG17005-RB 1..1917 1..1917 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:38:54 Download gff for AT13609.complete
Subject Subject Range Query Range Percent Splice Strand
CG17005-RB 1..1917 1..1917 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:35:20 Download gff for AT13609.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9328754..9328992 843..1081 98 -> Plus
2L 9328013..9328354 218..559 99 -> Plus
2L 9328413..9328695 560..842 99 -> Plus
2L 9327744..9327960 1..217 100 -> Plus
2L 9329079..9329777 1082..1780 98 -> Plus
2L 9329931..9330067 1781..1917 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:35:20 Download gff for AT13609.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9328754..9328992 843..1081 98 -> Plus
2L 9328013..9328354 218..559 99 -> Plus
2L 9328413..9328695 560..842 99 -> Plus
2L 9327744..9327960 1..217 100 -> Plus
2L 9329079..9329777 1082..1780 98 -> Plus
2L 9329931..9330067 1781..1917 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:35:20 Download gff for AT13609.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9328754..9328992 843..1081 98 -> Plus
2L 9328013..9328354 218..559 99 -> Plus
2L 9328413..9328695 560..842 99 -> Plus
2L 9327744..9327960 1..217 100 -> Plus
2L 9329079..9329777 1082..1780 98 -> Plus
2L 9329931..9330067 1781..1917 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:31:15 Download gff for AT13609.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9328413..9328695 560..842 99 -> Plus
arm_2L 9327744..9327960 1..217 100 -> Plus
arm_2L 9328013..9328354 218..559 99 -> Plus
arm_2L 9328754..9328992 843..1081 98 -> Plus
arm_2L 9329079..9329777 1082..1780 98 -> Plus
arm_2L 9329931..9330067 1781..1917 98   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:53:44 Download gff for AT13609.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9327744..9327960 1..217 100 -> Plus
2L 9328013..9328354 218..559 99 -> Plus
2L 9328413..9328695 560..842 99 -> Plus
2L 9328754..9328992 843..1081 98 -> Plus
2L 9329079..9329777 1082..1780 98 -> Plus
2L 9329931..9330067 1781..1917 98   Plus

AT13609.pep Sequence

Translation from 56 to 1882

> AT13609.pep
MEEEPLVSPSVPIRKPCGTFKPPAIYQKLMIDNLTVIRPPILKIFYWESF
EITGLNRKLRSNRIEHEHTFKIPIRQIHSHPLKMVFWIRNLSAANAKLTL
KRIQNCQCQPQQTQVGFNQFRQLFHCPHRRLLHISQEILSINPDEVVALT
VTAYFFLYGEHLLTYEVHTEDNRKFLWHFHLEISSFDPEKCLLTKELLPV
NIKSFYHITQPLWVQNITMSHLSFSFASRDRGLKLLNMNLTVPRQSVWPL
LVDYRPLDYENEAEIVLTYENTKARYKIKARGVLTDEKEQTDMPLKDREC
VDFLHVIYPNRVNFEICLREDRTQLVNVHNYGQQCMEFRWQSYIINDFFA
VVFNPPIFRLKGHHSKLCEIRVTVFDRLVHFRRIPIVLEVHRILDRATII
AKQELEEVESIDDPKWKEDSYVEHVYLHLNIRTNIKPALDSEELEPGDRI
DPTAGPEPCSQVGPGEARRGNGSGDGPSTPAPNTEEQRKEAERKELISRL
VAKNKLNPNEIIELSMAIDQRITIFEKLFWKYLSKSKFMRINGERKRQKV
VKTYEQVVSPDKTTPLEAASEIDRNHIMDLLSRLMQEAINDLAKNWVFIP
SQYYERNH*

AT13609.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:33:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22716-PA 618 GF22716-PA 12..617 16..607 2547 77.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:33:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25339-PA 607 GG25339-PA 1..607 1..608 3070 92.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:33:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13275-PA 595 GH13275-PA 11..594 14..607 2205 68.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:00:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG17005-PE 608 CG17005-PE 1..608 1..608 3221 100 Plus
CG17005-PB 608 CG17005-PB 1..608 1..608 3221 100 Plus
CG17005-PC 54 CG17005-PC 1..54 1..54 289 100 Plus
CG17005-PD 59 CG17005-PD 1..54 1..54 289 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:34:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17468-PA 591 GI17468-PA 5..590 16..607 2149 66.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:34:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26252-PA 579 GL26252-PA 3..578 14..607 2152 67.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:34:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14270-PA 579 GA14270-PA 3..578 14..607 2160 67.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:34:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17422-PA 605 GM17422-PA 1..605 1..608 3191 97.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:34:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23594-PA 605 GD23594-PA 1..605 1..608 3194 97.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:34:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14493-PA 591 GJ14493-PA 3..590 14..607 2194 68.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:34:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15077-PA 594 GK15077-PA 3..594 14..608 2264 68.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:34:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18831-PA 607 GE18831-PA 2..607 3..608 3048 92.2 Plus

AT13609.hyp Sequence

Translation from 56 to 1882

> AT13609.hyp
MEEEPLVSPSVPIRKPCGTFKPPAIYQKLMIDNLTVIRPPILKIFYWESF
EITGLNRKLRSNRIEHEHTFKIPIRQIHSHPLKMVFWIRNLSAANAKLTL
KRIQNCQCQPQQTQVGFNQFRQLFHCPHRRLLHISQEILSINPDEVVALT
VTAYFFLYGEHLLTYEVHTEDNRKFLWHFHLEISSFDPEKCLLTKELLPV
NIKSFYHITQPLWVQNITMSHLSFSFASRDRGLKLLNMNLTVPRQSVWPL
LVDYRPLDYENEAEIVLTYENTKARYKIKARGVLTDEKEQTDMPLKDREC
VDFLHVIYPNRVNFEICLREDRTQLVNVHNYGQQCMEFRWQSYIINDFFA
VVFNPPIFRLKGHHSKLCEIRVTVFDRLVHFRRIPIVLEVHRILDRATII
AKQELEEVESIDDPKWKEDSYVEHVYLHLNIRTNIKPALDSEELEPGDRI
DPTAGPEPCSQVGPGEARRGNGSGDGPSTPAPNTEEQRKEAERKELISRL
VAKNKLNPNEIIELSMAIDQRITIFEKLFWKYLSKSKFMRINGERKRQKV
VKTYEQVVSPDKTTPLEAASEIDRNHIMDLLSRLMQEAINDLAKNWVFIP
SQYYERNH*

AT13609.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:09:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG17005-PE 608 CG17005-PE 1..608 1..608 3221 100 Plus
CG17005-PB 608 CG17005-PB 1..608 1..608 3221 100 Plus
CG17005-PC 54 CG17005-PC 1..54 1..54 289 100 Plus
CG17005-PD 59 CG17005-PD 1..54 1..54 289 100 Plus