Clone AT13631 Report

Search the DGRC for AT13631

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:136
Well:31
Vector:pOTB7
Associated Gene/TranscriptGot2-RB
Protein status:AT13631.pep: gold
Sequenced Size:1532

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Got2-RB 2010-11-11 Gleaning Pick By Joe Carlson

Clone Sequence Records

AT13631.complete Sequence

1532 bp assembled on 2011-01-03

GenBank Submission: BT125856.1

> AT13631.complete
ATTAAGTTATGAGTAGAACCATTATTATGACGCTTAAGGACATTGTGCAT
GTGTGGTCCAACGACCCGGGAGAACGGATGTGCCGAGCGAACAGAGTATC
AACATGGTTCTCCGAGGTGCAGATGGGCCCACCCGATGCCATCTTGGGTG
TCACGGAAGCCTTCAAGAAGGACACCAACCCCAAGAAGATCAACTTGGGC
GCTGGCGCCTATCGCGATGACAACACCCAGCCCTTCGTGCTCCCCAGTGT
TCGGGAGGCCGAGAAGAGAGTGGTGAGCCGTAGTCTGGACAAGGAGTACG
CCACAATCATCGGCATTCCCGAGTTCTACAACAAGGCCATCGAGCTGGCA
TTGGGCAAGGGATCCAAGCGTCTGGCGGCCAAGCACAACGTGACCGCCCA
GTCCATCAGTGGAACTGGAGCTCTGCGCATCGGAGCCGCCTTCCTGGCCA
AGTTCTGGCAGGGCAACCGCGAGATCTACATCCCGTCGCCATCGTGGGGT
AACCATGTGGCCATTTTCGAGCACGCTGGTCTGCCGGTGAACCGATACCG
CTACTACGACAAGGACACCTGTGCCCTGGACTTTGGCGGCCTGATCGAGG
ATCTGAAGAAAATCCCCGAGAAGAGCATTGTTCTTCTGCACGCCTGCGCC
CACAACCCCACTGGAGTGGATCCCACTCTGGAGCAGTGGCGTGAGATCTC
GGCTCTGGTAAAGAAACGCAATCTGTATCCCTTCATCGACATGGCCTACC
AGGGCTTCGCCACCGGAGACATTGACCGCGACGCCCAGGCGGTCCGCACC
TTCGAGGCCGATGGCCACGACTTCTGCCTGGCCCAGAGTTTCGCCAAGAA
CATGGGATTGTATGGTGAGCGCGCTGGCGCCTTCACCGTGCTGTGCTCCG
ACGAGGAGGAGGCTGCTCGCGTGATGTCCCAAGTGAAGATCCTGATCCGT
GGTCTGTACTCCAATCCCCCGGTGCACGGAGCTCGTATTGCCGCCGAGAT
CCTCAACAACGAGGACTTGCGCGCCCAGTGGCTGAAGGATGTGAAGCTGA
TGGCCGACCGCATCATCGATGTGCGCACCAAGCTCAAGGACAATCTAATT
AAGCTGGGATCCAGCCAGAACTGGGACCACATTGTCAACCAAATCGGCAT
GTTCTGCTTCACGGGCCTGAAGCCGGAGCAGGTGCAGAAGCTGATCAAGG
ATCACAGCGTCTATCTCACCAACGATGGACGTGTTTCGATGGCGGGAGTC
ACCAGCAAGAATGTCGAGTACCTGGCTGAGAGCATACACAAGGTTACCAA
GTAAGGAGGACCAGTGGAGATCGAAGTGTGGAGATGGAGTTTCTGTAGTA
CCTTCTAATCGGCACTTGTACGAATTTTCTAGCACCAACGAAATTGCGAA
GTCTAGATAAGCCAATGCATTTTGCACACTCTCTATCCATATCTCTGTAT
ATAAGCTAAATGATCTGCCTTTTAAAAAATAAAGCATTTAAAATGTTAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

AT13631.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 01:22:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 1984265..1985153 1497..607 4330 99.3 Minus
chr2L 23010047 chr2L 1985221..1985471 608..358 1240 99.6 Minus
chr2L 23010047 chr2L 1985695..1985855 258..98 805 100 Minus
chr2L 23010047 chr2L 1985531..1985635 360..256 525 100 Minus
chr2L 23010047 chr2L 1986548..1986644 97..1 485 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 01:22:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1984514..1985403 1498..607 4350 99.4 Minus
2L 23513712 2L 1985471..1985721 608..358 1210 98.8 Minus
2L 23513712 2L 1985945..1986105 258..98 805 100 Minus
2L 23513712 2L 1985781..1985885 360..256 525 100 Minus
2L 23513712 2L 1986797..1986893 97..1 485 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:04:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1984514..1985403 1498..607 4360 99.4 Minus
2L 23513712 2L 1985471..1985721 608..358 1210 98.8 Minus
2L 23513712 2L 1985945..1986105 258..98 805 100 Minus
2L 23513712 2L 1985781..1985885 360..256 525 100 Minus
2L 23513712 2L 1986797..1986893 97..1 485 100 Minus
2R 25260384 2R 16142567..16142617 1121..1171 165 88.2 Plus
2R 25260384 2R 16142080..16142135 634..689 160 85.7 Plus
Blast to na_te.dros performed on 2019-03-17 01:22:45 has no hits.

AT13631.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 01:24:06 Download gff for AT13631.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 1984265..1985151 609..1497 99 <- Minus
chr2L 1985221..1985469 360..608 99 <- Minus
chr2L 1985532..1985633 258..359 100 <- Minus
chr2L 1985696..1985855 98..257 100 <- Minus
chr2L 1986548..1986644 1..97 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-01-05 09:00:54 Download gff for AT13631.complete
Subject Subject Range Query Range Percent Splice Strand
Got2-RB 1..1296 9..1304 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:36:50 Download gff for AT13631.complete
Subject Subject Range Query Range Percent Splice Strand
Got2-RB 1..1296 9..1304 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:56:06 Download gff for AT13631.complete
Subject Subject Range Query Range Percent Splice Strand
Got2-RB 1..1296 9..1304 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-05 09:00:54 Download gff for AT13631.complete
Subject Subject Range Query Range Percent Splice Strand
Got2-RB 63..1557 1..1497 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:36:50 Download gff for AT13631.complete
Subject Subject Range Query Range Percent Splice Strand
Got2-RB 63..1557 1..1497 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:56:06 Download gff for AT13631.complete
Subject Subject Range Query Range Percent Splice Strand
Got2-RB 63..1557 1..1497 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:24:06 Download gff for AT13631.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1985946..1986105 98..257 100 <- Minus
2L 1986797..1986893 1..97 100   Minus
2L 1984515..1985401 609..1497 99 <- Minus
2L 1985471..1985719 360..608 98 <- Minus
2L 1985782..1985883 258..359 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:24:06 Download gff for AT13631.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1985946..1986105 98..257 100 <- Minus
2L 1986797..1986893 1..97 100   Minus
2L 1984515..1985401 609..1497 99 <- Minus
2L 1985471..1985719 360..608 98 <- Minus
2L 1985782..1985883 258..359 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:24:06 Download gff for AT13631.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1985946..1986105 98..257 100 <- Minus
2L 1986797..1986893 1..97 100   Minus
2L 1984515..1985401 609..1497 99 <- Minus
2L 1985471..1985719 360..608 98 <- Minus
2L 1985782..1985883 258..359 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:36:50 Download gff for AT13631.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1985946..1986105 98..257 100 <- Minus
arm_2L 1986797..1986893 1..97 100   Minus
arm_2L 1984515..1985401 609..1497 99 <- Minus
arm_2L 1985471..1985719 360..608 98 <- Minus
arm_2L 1985782..1985883 258..359 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:53:20 Download gff for AT13631.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1985946..1986105 98..257 100 <- Minus
2L 1986797..1986893 1..97 100   Minus
2L 1984515..1985401 609..1497 99 <- Minus
2L 1985471..1985719 360..608 98 <- Minus
2L 1985782..1985883 258..359 100 <- Minus

AT13631.pep Sequence

Translation from 8 to 1303

> AT13631.pep
MSRTIIMTLKDIVHVWSNDPGERMCRANRVSTWFSEVQMGPPDAILGVTE
AFKKDTNPKKINLGAGAYRDDNTQPFVLPSVREAEKRVVSRSLDKEYATI
IGIPEFYNKAIELALGKGSKRLAAKHNVTAQSISGTGALRIGAAFLAKFW
QGNREIYIPSPSWGNHVAIFEHAGLPVNRYRYYDKDTCALDFGGLIEDLK
KIPEKSIVLLHACAHNPTGVDPTLEQWREISALVKKRNLYPFIDMAYQGF
ATGDIDRDAQAVRTFEADGHDFCLAQSFAKNMGLYGERAGAFTVLCSDEE
EAARVMSQVKILIRGLYSNPPVHGARIAAEILNNEDLRAQWLKDVKLMAD
RIIDVRTKLKDNLIKLGSSQNWDHIVNQIGMFCFTGLKPEQVQKLIKDHS
VYLTNDGRVSMAGVTSKNVEYLAESIHKVTK*

AT13631.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:55:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15312-PA 424 GF15312-PA 21..424 26..431 1873 83.3 Plus
Dana\GF11770-PA 416 GF11770-PA 4..398 34..427 985 46.3 Plus
Dana\GF10678-PA 674 GF10678-PA 264..647 48..431 532 31.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:55:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24563-PA 424 GG24563-PA 17..424 20..431 2135 96.4 Plus
Dere\GG20572-PA 436 GG20572-PA 24..418 34..427 978 46.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:55:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH25015-PA 428 GH25015-PA 28..428 31..431 1863 82.5 Plus
Dgri\GH21676-PA 413 GH21676-PA 3..400 31..427 970 45.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:15:15
Subject Length Description Subject Range Query Range Score Percent Strand
Got2-PB 431 CG4233-PB 1..431 1..431 2249 100 Plus
Got2-PA 424 CG4233-PA 24..424 31..431 2089 100 Plus
Got1-PA 416 CG8430-PA 4..398 34..427 938 46.9 Plus
Got1-PB 437 CG8430-PB 25..419 34..427 938 46.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:55:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13682-PA 427 GI13682-PA 1..427 1..431 1855 77.7 Plus
Dmoj\GI18831-PA 410 GI18831-PA 3..400 31..427 985 45.4 Plus
Dmoj\GI13534-PA 441 GI13534-PA 23..426 28..430 875 41.7 Plus
Dmoj\GI11671-PA 467 GI11671-PA 1..428 1..429 560 31.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:55:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18459-PA 427 GL18459-PA 27..427 31..431 1808 80 Plus
Dper\GL10236-PA 415 GL10236-PA 4..398 34..427 1005 47.4 Plus
Dper\GL19583-PA 462 GL19583-PA 40..437 34..431 524 29.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:55:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18050-PA 427 GA18050-PA 27..427 31..431 1813 80.3 Plus
Dpse\GA24132-PA 415 GA24132-PA 4..398 34..427 1005 47.4 Plus
Dpse\GA26018-PA 462 GA26018-PA 28..437 21..431 529 30 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:55:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21664-PA 437 GM21664-PA 25..419 34..427 989 47.9 Plus
Dsec\GM16578-PA 1044 GM16578-PA 17..198 20..204 940 91.9 Plus
Dsec\GM19419-PA 148 GM19419-PA 6..130 303..427 366 50.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:55:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22881-PA 424 GD22881-PA 17..424 20..431 2123 95.6 Plus
Dsim\GD11164-PA 437 GD11164-PA 9..419 18..427 991 46.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:55:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17439-PA 427 GJ17439-PA 18..427 18..431 1876 80.9 Plus
Dvir\GJ21858-PA 411 GJ21858-PA 6..400 34..427 975 46.3 Plus
Dvir\GJ13488-PA 826 GJ13488-PA 4..402 34..431 926 44 Plus
Dvir\GJ13489-PA 421 GJ13489-PA 6..390 48..431 847 42.5 Plus
Dvir\GJ11347-PA 463 GJ11347-PA 33..428 34..429 594 34.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:55:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24813-PA 424 GK24813-PA 17..424 20..431 1885 82.5 Plus
Dwil\GK21961-PA 415 GK21961-PA 4..398 34..427 968 44.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:55:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15280-PA 424 GE15280-PA 17..424 20..431 2139 96.6 Plus
Dyak\GE11758-PA 437 GE11758-PA 25..419 34..427 978 46 Plus

AT13631.hyp Sequence

Translation from 8 to 1303

> AT13631.hyp
MSRTIIMTLKDIVHVWSNDPGERMCRANRVSTWFSEVQMGPPDAILGVTE
AFKKDTNPKKINLGAGAYRDDNTQPFVLPSVREAEKRVVSRSLDKEYATI
IGIPEFYNKAIELALGKGSKRLAAKHNVTAQSISGTGALRIGAAFLAKFW
QGNREIYIPSPSWGNHVAIFEHAGLPVNRYRYYDKDTCALDFGGLIEDLK
KIPEKSIVLLHACAHNPTGVDPTLEQWREISALVKKRNLYPFIDMAYQGF
ATGDIDRDAQAVRTFEADGHDFCLAQSFAKNMGLYGERAGAFTVLCSDEE
EAARVMSQVKILIRGLYSNPPVHGARIAAEILNNEDLRAQWLKDVKLMAD
RIIDVRTKLKDNLIKLGSSQNWDHIVNQIGMFCFTGLKPEQVQKLIKDHS
VYLTNDGRVSMAGVTSKNVEYLAESIHKVTK*

AT13631.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:02:06
Subject Length Description Subject Range Query Range Score Percent Strand
Got2-PB 431 CG4233-PB 1..431 1..431 2249 100 Plus
Got2-PA 424 CG4233-PA 24..424 31..431 2089 100 Plus
Got1-PA 416 CG8430-PA 4..398 34..427 938 46.9 Plus
Got1-PB 437 CG8430-PB 25..419 34..427 938 46.9 Plus