Clone AT13706 Report

Search the DGRC for AT13706

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:137
Well:6
Vector:pOTB7
Associated Gene/TranscriptCG14508-RA
Protein status:AT13706.pep: gold
Preliminary Size:1035
Sequenced Size:1313

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14508 2002-01-01 Sim4 clustering to Release 2
CG14508 2002-01-18 Blastp of sequenced clone
CG14508 2003-01-01 Sim4 clustering to Release 3
CG14508 2008-04-29 Release 5.5 accounting
CG14508 2008-08-15 Release 5.9 accounting
CG14508 2008-12-18 5.12 accounting

Clone Sequence Records

AT13706.complete Sequence

1313 bp (1313 high quality bases) assembled on 2002-01-18

GenBank Submission: AY089328

> AT13706.complete
AAAAAGCTTATACTTTTACACATTTCAATATTTCCAAACAATTACATATT
TTCTTCGCAATGACGATTTTTTGCCATCAAAGGAGGAAGTCTAATATTTT
GCCATAGAACATATTTCCCCAAGTGGTGACAACCCCAGTCGACAGAGCTT
TCCAACACTGGTTGCGTTGACATTGTAAATAAATCGTTTTGAGAGATAAA
GCTGAATCCGACCGAAAATGGCCAACAAATTCAGGAGTCTGAACAGCAAA
CTTTTCCAGCTGGCCATGAGCGGCATCCAGCGGACATCGGTGCGTCCGCG
GATAAGTTTTCCGGGTCGTGGAAGCGGCTTTACTGGAAATCGCAAGCTGC
TGGGAGCCCTGGGAGCCCTAACCGGAACAGCAGGGCTGCTGATCTACGCC
CTGGAAACCAGCGTGGATGCCTCCTCGGACTGCGTGCATCCGGCCCACCA
GCACTGGAATCACAAAGGGCTTTTGTCCGCATTGGACAAGGAGAGCGTGC
GTCGAGGTTACACCGTTTACAAGGAGGTCTGCTCCTCCTGCCACTCATTG
CAGTACATGGCCTATCGCAACCTGGTGGGAGTGTGCATGACGGAGGCGGA
GGCCAAGGCCGAGGCGGAGGCCATCACGGTGCGGGATGGGCCCAACGAGG
AGGGCGAGTACTACGAGCGTCCCGGCAAGCTGTCCGATCACTTCCCCTCT
CCGTACGCCAACGAGGAGGCGGCCCGTTCCGCCAACAATGGCTCCTATCC
GCCGGATCTCAGCTATATTGTGTCGGCTCGCAAGGGCGGCGAGGATTACG
TGTTCTCCCTGCTCACCGGATACTGTGATCCTCCGGCTGGGTTTGCCCTT
CGTGATGGACTGTACTTCAATCCGTACTTCTCGGGCGGAGCGATTGCCAT
GGGCAAGGTAGTTGACAATGAGGTGGTCTCCTTTGAAGATCCAAATGTGC
CTGCTTCGGCCGCCCAAATTGCCAAGGATGTGTGCGTCTTCCTCAAGTGG
ACTTCAGAACCGGAGACCGACGAACGTCGCCTGCTGCTCATCAAAGTTAC
TCTGATTTCGACCTTTTTGATTGGCATTTCCTACTACATCAAGCGTTTTA
AGTGGTCAACGCTCAAGTCTCGCAAGATCTTCTTCATTCCCGAACTGGAG
GCCCAGGCCAAAAGAGAGGCGGAGGAGGCCGCCAAAGCAGCGCGCAAGGC
CAAGGAGCAGGAGTGCAACAAGTGCGAGAACCAGAACGAGAAGAAGGACT
AAGTTTGGTGAACTGTTTAAATAAAGGTTTTTGAATTTAAATGAAAAAAA
AAAAAAAAAAAAA

AT13706.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:29:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG14508-RA 1461 CG14508-RA 48..1342 1..1295 6445 99.8 Plus
CG14508.a 2440 CG14508.a 1153..2440 1..1288 6410 99.8 Plus
CG4769.a 1445 CG4769.a 399..633 668..902 500 80.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:03:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 25025461..25026648 1293..106 5940 100 Minus
chr3R 27901430 chr3R 25026828..25026934 107..1 535 100 Minus
chr3L 24539361 chr3L 5354305..5354539 668..902 500 80.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:48:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:03:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29202658..29203847 1295..106 5920 99.8 Minus
3R 32079331 3R 29204027..29204133 107..1 535 100 Minus
3L 28110227 3L 5361734..5361968 668..902 500 80.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:58:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 28943489..28944678 1295..106 5920 99.8 Minus
3R 31820162 3R 28944858..28944964 107..1 535 100 Minus
3L 28103327 3L 5354834..5355068 668..902 500 80.8 Plus
Blast to na_te.dros performed on 2019-03-15 19:03:32 has no hits.

AT13706.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:04:08 Download gff for AT13706.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 25025461..25026646 108..1293 100 <- Minus
chr3R 25026828..25026934 1..107 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:04:31 Download gff for AT13706.complete
Subject Subject Range Query Range Percent Splice Strand
CG14508-RA 1..1035 218..1252 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:47:49 Download gff for AT13706.complete
Subject Subject Range Query Range Percent Splice Strand
CG14508-RA 1..1035 218..1252 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:40:56 Download gff for AT13706.complete
Subject Subject Range Query Range Percent Splice Strand
CG14508-RA 1..1035 218..1252 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:15:31 Download gff for AT13706.complete
Subject Subject Range Query Range Percent Splice Strand
CG14508-RA 1..1035 218..1252 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:09:11 Download gff for AT13706.complete
Subject Subject Range Query Range Percent Splice Strand
CG14508-RA 1..1035 218..1252 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:11:56 Download gff for AT13706.complete
Subject Subject Range Query Range Percent Splice Strand
CG14508-RA 1..1288 1..1288 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:47:49 Download gff for AT13706.complete
Subject Subject Range Query Range Percent Splice Strand
CG14508-RA 1..1288 1..1288 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:40:56 Download gff for AT13706.complete
Subject Subject Range Query Range Percent Splice Strand
CG14508-RA 1..1293 1..1293 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:15:31 Download gff for AT13706.complete
Subject Subject Range Query Range Percent Splice Strand
CG14508-RA 1..1288 1..1288 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:09:11 Download gff for AT13706.complete
Subject Subject Range Query Range Percent Splice Strand
CG14508-RA 1..1293 1..1293 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:04:08 Download gff for AT13706.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29202660..29203845 108..1293 99 <- Minus
3R 29204027..29204133 1..107 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:04:08 Download gff for AT13706.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29202660..29203845 108..1293 99 <- Minus
3R 29204027..29204133 1..107 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:04:08 Download gff for AT13706.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29202660..29203845 108..1293 99 <- Minus
3R 29204027..29204133 1..107 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:40:56 Download gff for AT13706.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25028382..25029567 108..1293 99 <- Minus
arm_3R 25029749..25029855 1..107 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:49:20 Download gff for AT13706.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28943491..28944676 108..1293 99 <- Minus
3R 28944858..28944964 1..107 100   Minus

AT13706.pep Sequence

Translation from 217 to 1251

> AT13706.pep
MANKFRSLNSKLFQLAMSGIQRTSVRPRISFPGRGSGFTGNRKLLGALGA
LTGTAGLLIYALETSVDASSDCVHPAHQHWNHKGLLSALDKESVRRGYTV
YKEVCSSCHSLQYMAYRNLVGVCMTEAEAKAEAEAITVRDGPNEEGEYYE
RPGKLSDHFPSPYANEEAARSANNGSYPPDLSYIVSARKGGEDYVFSLLT
GYCDPPAGFALRDGLYFNPYFSGGAIAMGKVVDNEVVSFEDPNVPASAAQ
IAKDVCVFLKWTSEPETDERRLLLIKVTLISTFLIGISYYIKRFKWSTLK
SRKIFFIPELEAQAKREAEEAAKAARKAKEQECNKCENQNEKKD*

AT13706.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:33:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18408-PA 343 GF18408-PA 1..343 1..344 1397 77.6 Plus
Dana\GF23975-PA 307 GF23975-PA 32..305 35..309 983 68.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:33:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12029-PA 344 GG12029-PA 1..344 1..344 1712 94.5 Plus
Dere\GG15267-PA 307 GG15267-PA 32..305 35..309 995 70.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:33:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14006-PA 335 GH14006-PA 1..335 1..335 1125 67.2 Plus
Dgri\GH16186-PA 307 GH16186-PA 37..305 40..309 965 67.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:36:58
Subject Length Description Subject Range Query Range Score Percent Strand
Cyt-c1L-PA 344 CG14508-PA 1..344 1..344 1794 100 Plus
Cyt-c1-PB 307 CG4769-PB 32..305 35..309 1010 70.5 Plus
Cyt-c1-PA 307 CG4769-PA 32..305 35..309 1010 70.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:33:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22350-PA 323 GI22350-PA 1..319 1..320 1150 69.7 Plus
Dmoj\GI13337-PA 307 GI13337-PA 39..305 42..309 1011 68.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:33:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13606-PA 354 GL13606-PA 1..341 1..343 1214 66.8 Plus
Dper\GL12203-PA 356 GL12203-PA 39..270 42..274 860 70 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:33:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13039-PA 354 GA13039-PA 1..341 1..343 1213 66.8 Plus
Dpse\GA18418-PA 307 GA18418-PA 39..305 42..309 985 69.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:33:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12253-PA 344 GM12253-PA 1..344 1..344 1811 98 Plus
Dsec\GM14701-PA 307 GM14701-PA 32..305 35..309 1000 70.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:33:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17917-PA 344 GD17917-PA 1..344 1..344 1795 97.1 Plus
Dsim\GD13884-PA 307 GD13884-PA 32..305 35..309 1000 70.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:33:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14231-PA 324 GJ14231-PA 1..318 1..320 1202 68.4 Plus
Dvir\GJ13163-PA 307 GJ13163-PA 38..305 41..309 997 70.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:33:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22494-PA 321 GK22494-PA 1..301 1..308 1163 69.8 Plus
Dwil\GK16868-PA 307 GK16868-PA 32..305 35..309 976 68.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:33:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10466-PA 344 GE10466-PA 1..344 1..344 1596 94.2 Plus
Dyak\GE21489-PA 307 GE21489-PA 32..305 35..309 991 69.8 Plus

AT13706.hyp Sequence

Translation from 217 to 1251

> AT13706.hyp
MANKFRSLNSKLFQLAMSGIQRTSVRPRISFPGRGSGFTGNRKLLGALGA
LTGTAGLLIYALETSVDASSDCVHPAHQHWNHKGLLSALDKESVRRGYTV
YKEVCSSCHSLQYMAYRNLVGVCMTEAEAKAEAEAITVRDGPNEEGEYYE
RPGKLSDHFPSPYANEEAARSANNGSYPPDLSYIVSARKGGEDYVFSLLT
GYCDPPAGFALRDGLYFNPYFSGGAIAMGKVVDNEVVSFEDPNVPASAAQ
IAKDVCVFLKWTSEPETDERRLLLIKVTLISTFLIGISYYIKRFKWSTLK
SRKIFFIPELEAQAKREAEEAAKAARKAKEQECNKCENQNEKKD*

AT13706.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:09:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG14508-PA 344 CG14508-PA 1..344 1..344 1794 100 Plus
CG4769-PB 307 CG4769-PB 32..305 35..309 1010 70.5 Plus
CG4769-PA 307 CG4769-PA 32..305 35..309 1010 70.5 Plus