Clone AT13744 Report

Search the DGRC for AT13744

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:137
Well:44
Vector:pOTB7
Associated Gene/TranscriptCG12020-RA
Protein status:AT13744.pep: gold
Sequenced Size:1260

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13337 2007-08-09 Manual selection by Ken Wan
CG13337 2008-04-29 Picked prior to 5.5
CG12020 2008-12-18 5.12 accounting

Clone Sequence Records

AT13744.complete Sequence

1260 bp assembled on 2008-08-28

GenBank Submission: BT044064.1

> AT13744.complete
GTCAAACATTCTGTGAACACTTCTGCCAGTTGTTATACGCTTCGACTCCG
AATAGAAATAATGAACCGGCCGGAGCTGGACTACTACGCGGTGCTGGATC
AGCCCAGAGGCGCCACCAAGGAGCAGATTACTCTGGCCTACCGCCGCCTG
GCCATTCGTCTTTGCCCACATCGCGACAAGAAGGACGAGCAGGACTTTGT
GCCGCTGGCCCAGGAGGGTCGTCTCACTCACCTCTCACCCATGGGCGAGC
CCAGGCAGTGGGCTTACGTCAACATGGCCTTCGATGTGCTGGGCAACGAT
CTGTACCGGGCCATATACGATCGCTTTGGCGAGGCGGGTTTGTTCGAGGG
CGTCATGCTGCCGAACGGATACTTTCCGCCCTATCAGTACGACGGCGACC
ACATGAAGGTCTACGAGCGGGTCTTCGGTAGCTACTCGCCGTATGCCAAC
GTGATCGATGCGATCTCCAATCCACCGAGCTTGTACGCTACGCGCCAGCA
TGGCATTGGCGTGCGTTCCAAGGACGCCAGTACGGAGAGGATCATCGAGC
TGTCGCTGGAGGAAGTACGCACTGGCTGCGTCAAGCTGATGAACGTGTGG
CGCCAGGAGATCGTGGACGCCAAGGAGTCGCGGCTGGAGAAGCGCAAGCA
CACCTTAAAGCTGAACATTGCCCCGGGAACCACGGCCGGAACTCGCTTCT
GCTTCAAGGAGGAGGGCGATCGCTATCCGGCCACCATTCCGGGTGATATT
ATTTTCATTGCCGCCGACAAGCCGCATCCGGACTTTGAGAGGAGAAACCA
ACACGACCTGGTCTACAGGCAGTCTATTGGCCTGTGCCAGGCCTTCACCG
GCTTCACGTTCTTCATTTGCACGCTGGACCGGCGCCAGTTGAAGGTGGTC
ATTACGGACGTAGTGCAGCCGGGATACACCAAAGTGGTTCCCCTCGAGGG
ACTCCCCAAGTGCCGCAATTTGGATGCAGTTACGGCCATCAAGGAGGCCA
ACAAGAAGGTGGAGCAGTTCGGGGATCTCATTATAGAATTTGATTATATC
TTTCCCAAGTATTTGACTCCACATATGAAGCATATCACTCGCGAATTCTT
CCGCGAATTCCGCAAGCTCGAAATAGAATTGGAGGAGGAGGAGGAACGTA
ACATGGTTTGATGGCAGACACTTTATTGTTTTTCCGTATTTGGAACACAG
ATATTTGTGCGTACAGAGAAATTAAATTCAAAATTTGCGTTTAAAAAAAA
AAAAAAAAAA

AT13744.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:08:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG12020-RA 1242 CG12020-RA 1..1242 1..1242 6105 99.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:47:06
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 1796865..1797909 1..1045 5150 99.5 Plus
chr3L 24539361 chr3L 1797974..1798170 1046..1242 955 99 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:48:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:47:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1797305..1798349 1..1045 5150 99.5 Plus
3L 28110227 3L 1798414..1798614 1046..1246 975 99 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:26:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 1797305..1798349 1..1045 5150 99.5 Plus
3L 28103327 3L 1798414..1798614 1046..1246 975 99 Plus
Blast to na_te.dros performed on 2019-03-16 19:47:04 has no hits.

AT13744.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:47:53 Download gff for AT13744.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 1797974..1798170 1046..1242 98   Plus
chr3L 1796865..1797909 1..1045 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:04:40 Download gff for AT13744.complete
Subject Subject Range Query Range Percent Splice Strand
CG12020-RA 1..1101 61..1161 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:12:48 Download gff for AT13744.complete
Subject Subject Range Query Range Percent Splice Strand
CG12020-RA 1..1101 61..1161 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:47:31 Download gff for AT13744.complete
Subject Subject Range Query Range Percent Splice Strand
CG12020-RA 1..1101 61..1161 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:42:38 Download gff for AT13744.complete
Subject Subject Range Query Range Percent Splice Strand
CG12020-RA 1..1101 61..1161 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:50:33 Download gff for AT13744.complete
Subject Subject Range Query Range Percent Splice Strand
CG12020-RA 1..1242 1..1242 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:12:48 Download gff for AT13744.complete
Subject Subject Range Query Range Percent Splice Strand
CG12020-RA 1..1242 1..1242 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:31 Download gff for AT13744.complete
Subject Subject Range Query Range Percent Splice Strand
CG12020-RA 1..1242 1..1242 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-28 18:08:45 Download gff for AT13744.complete
Subject Subject Range Query Range Percent Splice Strand
CG12020-RA 1..1242 1..1242 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:42:38 Download gff for AT13744.complete
Subject Subject Range Query Range Percent Splice Strand
CG12020-RA 1..1242 1..1242 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:47:53 Download gff for AT13744.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1797305..1798349 1..1045 99 -> Plus
3L 1798414..1798610 1046..1242 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:47:53 Download gff for AT13744.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1797305..1798349 1..1045 99 -> Plus
3L 1798414..1798610 1046..1242 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:47:53 Download gff for AT13744.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1797305..1798349 1..1045 99 -> Plus
3L 1798414..1798610 1046..1242 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:31 Download gff for AT13744.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1797305..1798349 1..1045 99 -> Plus
arm_3L 1798414..1798610 1046..1242 98   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:43:21 Download gff for AT13744.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1797305..1798349 1..1045 99 -> Plus
3L 1798414..1798610 1046..1242 98   Plus

AT13744.pep Sequence

Translation from 0 to 1160

> AT13744.pep
VKHSVNTSASCYTLRLRIEIMNRPELDYYAVLDQPRGATKEQITLAYRRL
AIRLCPHRDKKDEQDFVPLAQEGRLTHLSPMGEPRQWAYVNMAFDVLGND
LYRAIYDRFGEAGLFEGVMLPNGYFPPYQYDGDHMKVYERVFGSYSPYAN
VIDAISNPPSLYATRQHGIGVRSKDASTERIIELSLEEVRTGCVKLMNVW
RQEIVDAKESRLEKRKHTLKLNIAPGTTAGTRFCFKEEGDRYPATIPGDI
IFIAADKPHPDFERRNQHDLVYRQSIGLCQAFTGFTFFICTLDRRQLKVV
ITDVVQPGYTKVVPLEGLPKCRNLDAVTAIKEANKKVEQFGDLIIEFDYI
FPKYLTPHMKHITREFFREFRKLEIELEEEEERNMV*

AT13744.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 12:03:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24837-PA 366 GF24837-PA 1..353 21..373 1735 89.2 Plus
Dana\GF15175-PA 346 GF15175-PA 4..346 27..367 391 29.9 Plus
Dana\GF10450-PA 354 GF10450-PA 4..352 27..367 344 27.8 Plus
Dana\GF19555-PA 334 GF19555-PA 4..321 27..356 343 28.9 Plus
Dana\GF20662-PA 355 GF20662-PA 25..328 27..353 201 26.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 12:03:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14825-PA 366 GG14825-PA 1..366 21..386 1920 96.4 Plus
Dere\GG24779-PA 350 GG24779-PA 4..348 27..365 375 28.7 Plus
Dere\GG18918-PA 332 GG18918-PA 4..322 27..359 301 28.2 Plus
Dere\DnaJ-1-PA 351 GG14117-PA 4..349 27..367 300 27.5 Plus
Dere\GG19654-PA 403 GG19654-PA 4..364 25..381 204 22.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 12:03:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16434-PA 366 GH16434-PA 1..352 21..372 1633 83.5 Plus
Dgri\GH11404-PA 346 GH11404-PA 4..346 27..367 362 28.8 Plus
Dgri\GH15011-PA 353 GH15011-PA 4..349 27..365 296 27.5 Plus
Dgri\GH11226-PA 355 GH11226-PA 25..328 27..353 199 25.6 Plus
Dgri\GH19043-PA 405 GH19043-PA 211..365 214..380 162 27.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:01:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG12020-PA 366 CG12020-PA 1..366 21..386 1941 100 Plus
CG5001-PC 346 CG5001-PC 4..344 27..365 368 29.1 Plus
CG5001-PD 350 CG5001-PD 4..348 27..365 364 28.8 Plus
CG5001-PA 350 CG5001-PA 4..348 27..365 364 28.8 Plus
CG5001-PB 350 CG5001-PB 4..348 27..365 364 28.8 Plus
DnaJ-1-PA 334 CG10578-PA 4..326 27..361 326 29.8 Plus
DnaJ-1-PB 334 CG10578-PB 4..326 27..361 326 29.8 Plus
Droj2-PE 403 CG8863-PE 4..364 25..381 207 23.5 Plus
Droj2-PD 403 CG8863-PD 4..364 25..381 207 23.5 Plus
Droj2-PC 403 CG8863-PC 4..364 25..381 207 23.5 Plus
Droj2-PB 403 CG8863-PB 4..364 25..381 207 23.5 Plus
Droj2-PA 403 CG8863-PA 4..364 25..381 207 23.5 Plus
CG2887-PA 342 CG2887-PA 4..332 27..359 206 24.3 Plus
shv-PA 354 CG4164-PA 25..341 27..373 195 24.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 12:03:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12518-PA 368 GI12518-PA 1..352 21..372 1635 83.2 Plus
Dmoj\GI14539-PA 347 GI14539-PA 4..347 27..367 343 28 Plus
Dmoj\GI15199-PA 325 GI15199-PA 4..311 27..356 321 29.3 Plus
Dmoj\GI13174-PA 352 GI13174-PA 4..350 27..367 311 27.7 Plus
Dmoj\GI21690-PA 355 GI21690-PA 25..345 27..369 207 25.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 12:03:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25304-PA 366 GL25304-PA 1..352 21..372 1668 86.9 Plus
Dper\GL15626-PA 318 GL15626-PA 4..309 27..319 350 30.6 Plus
Dper\GL16659-PA 158 GL16659-PA 1..144 197..355 205 33.8 Plus
Dper\GL18879-PA 355 GL18879-PA 25..328 27..353 196 25.1 Plus
Dper\GL24472-PA 404 GL24472-PA 210..365 214..381 170 28.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 12:03:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11343-PA 366 GA11343-PA 1..352 21..372 1668 86.6 Plus
Dpse\GA18584-PA 346 GA18584-PA 4..346 27..367 381 29.6 Plus
Dpse\GA10408-PA 353 GA10408-PA 4..339 27..355 335 28.3 Plus
Dpse\GA17999-PA 355 GA17999-PA 25..328 27..353 196 25.1 Plus
Dpse\GA21376-PA 404 GA21376-PA 210..365 214..381 168 28.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 12:03:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14447-PA 366 GM14447-PA 1..366 21..386 1966 99.5 Plus
Dsec\GM16806-PA 350 GM16806-PA 4..348 27..365 375 28.7 Plus
Dsec\DnaJ-1-PA 337 GM13903-PA 4..335 27..367 348 29.4 Plus
Dsec\GM11309-PA 344 GM11309-PA 4..334 27..359 212 22.8 Plus
Dsec\GM16745-PA 354 GM16745-PA 25..341 27..373 189 26.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 12:03:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13648-PA 366 GD13648-PA 1..366 21..386 1962 99.2 Plus
Dsim\GD23083-PA 346 GD23083-PA 4..344 27..365 379 29 Plus
Dsim\DnaJ-1-PA 352 GD13179-PA 4..350 27..367 309 27.5 Plus
Dsim\GD16032-PA 300 GD16032-PA 4..298 27..367 228 23.6 Plus
Dsim\GD18906-PA 403 GD18906-PA 209..364 214..381 174 28.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 12:03:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12422-PA 358 GJ12422-PA 1..357 21..385 1596 79.7 Plus
Dvir\GJ16971-PA 347 GJ16971-PA 4..345 27..365 357 28.8 Plus
Dvir\GJ11949-PA 351 GJ11949-PA 4..349 27..367 310 28.5 Plus
Dvir\GJ14805-PA 325 GJ14805-PA 4..291 27..323 294 29.1 Plus
Dvir\GJ17778-PA 355 GJ17778-PA 25..345 27..369 199 25.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 12:03:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20532-PA 366 GK20532-PA 1..352 21..372 1540 77 Plus
Dwil\GK15183-PA 346 GK15183-PA 4..346 27..367 378 29.1 Plus
Dwil\GK19767-PA 330 GK19767-PA 4..316 27..355 364 31.5 Plus
Dwil\GK16875-PA 356 GK16875-PA 4..354 27..367 326 28.4 Plus
Dwil\GK10421-PA 316 GK10421-PA 4..314 27..367 289 27.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 12:03:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21189-PA 366 GE21189-PA 1..366 21..386 1923 96.7 Plus
Dyak\GE17451-PA 350 GE17451-PA 4..348 27..365 375 28.7 Plus
Dyak\DnaJ-1-PA 351 GE20542-PA 4..349 27..367 331 27.7 Plus
Dyak\GE16847-PA 354 GE16847-PA 25..341 27..373 187 26.3 Plus
Dyak\GE26270-PA 403 GE26270-PA 209..364 214..381 173 28.2 Plus

AT13744.hyp Sequence

Translation from 1 to 1160

> AT13744.hyp
VKHSVNTSASCYTLRLRIETMNRPELDYYAVLDQPRGATKEQITLAYRRL
AIRLCPHRDKKDEQDFVPLAQEGRLTHLSPMGEPRQWAYVNMAFDVLGND
LYRAIYDRFGEAGLFEGVMLPNGYFPPYQYDGDHMKVYERVFGSYSPYAN
VIDAISNPPSLYATRQHGIGVRSKDASTERIIELSLEEVRTGCVKLMNVW
RQEIVDAKESRLEKRKHTLKLNIAPGTTAGTRFCFKEEGDRYPATIPGDI
IFIAADKPHPDFERRNQHDLVYRQSIGLCQAFTGFTFFICTLDRRQLKVV
ITDVVQPGYTKVVPLEGLPKCRNLDAVTAIKEANKKVEQFGDLIIEFDYI
FPKYLTPHMKHITREFFREFRKLEIELEEEEERNMV*

AT13744.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:09:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG12020-PA 366 CG12020-PA 1..366 21..386 1941 100 Plus
CG5001-PC 346 CG5001-PC 4..344 27..365 368 29.1 Plus
CG5001-PD 350 CG5001-PD 4..348 27..365 364 28.8 Plus
CG5001-PA 350 CG5001-PA 4..348 27..365 364 28.8 Plus
CG5001-PB 350 CG5001-PB 4..348 27..365 364 28.8 Plus