Clone AT13819 Report

Search the DGRC for AT13819

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:138
Well:19
Vector:pOTB7
Associated Gene/TranscriptCG4375-RA
Protein status:AT13819.pep: gold
Preliminary Size:622
Sequenced Size:794

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4375 2002-01-01 Sim4 clustering to Release 2
CG4375 2002-01-11 Blastp of sequenced clone
CG4375 2003-01-01 Sim4 clustering to Release 3
CG4375 2008-04-29 Release 5.5 accounting
CG4375 2008-08-15 Release 5.9 accounting
CG4375 2008-12-18 5.12 accounting

Clone Sequence Records

AT13819.complete Sequence

794 bp (794 high quality bases) assembled on 2002-01-11

GenBank Submission: AY075197

> AT13819.complete
GATACGCAGCTAGTTTTTGAGAATTAACAAAAATTCTCAGTGCAAACAAA
ATTTGAAAAAAAAAGTGAAAAAACGCGACATTTCTTAGAAGCTGTAGAAT
TCAGAGATGTCCAGCAAGAAGCGCATAGATTTAAAGCCCGCGTCCTTCGA
AGACTTGGCCAATCAGGTGTTCGAAAAGTCGAAACAGATGAGTATGTCAA
TGAAGGAGCAGTGCAAGTTGGTCCAGGAGTATCTGAAGGCTAGGCTCGAT
GGGAGTGATGGAAGCGATGCAGAATATAATAGTGATTCCTATTCAGATTT
TGAATCCGAGTCGGATTCCGATTCCGATTCCGATTTCGAGGAGGATTCCC
TTACTGATTCCGATGAGCAAACAGAGGAGAGCAGTGATGAGTCCGAATCG
GAACACAGTGAAGTCGAGGAGCGTACCAAACCATCAGATACTCACAAGAC
TACCAACGGAGGGCTCTGCGAAAAACCAATCTCCAAGGTCGAGCCTGAAC
AATCTCGGCTCGTGGCCTTTGTGGCTCCTCTCAAATCCCCTGCCCCCCGC
ATCCACCGTCGACTGACTATGGCTGGTGGCGTTATAGCTCCTCATAGTCG
CAGTAGTGCCTTCTAAATCATTGGTCAAGCTAGGAGCTAGAGGTTCATCC
AATCGATTTTATTGTTTACACAGTTTGTATTTAAATCATTTTGTAGTACT
TTGTAATTAAAAATCATATCGCGACTTATTTTGAAATAAACGTACCACGT
TCAGTAGCTACCGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

AT13819.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:30:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG4375-RA 791 CG4375-RA 8..626 1..620 2940 98.5 Plus
CG4375-RA 791 CG4375-RA 643..791 616..762 630 95.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:07:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 1025969..1026754 764..1 3395 96.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:48:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:07:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1026103..1026890 766..1 3300 95.4 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:58:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1026272..1026890 620..1 2940 98.5 Minus
2L 23513712 2L 1026103..1026255 766..616 650 96 Minus
Blast to na_te.dros performed on 2019-03-16 16:07:46 has no hits.

AT13819.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:08:46 Download gff for AT13819.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 1025969..1026119 617..764 96 <- Minus
chr2L 1026140..1026754 1..616 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:04:49 Download gff for AT13819.complete
Subject Subject Range Query Range Percent Splice Strand
CG4375-RA 1..510 107..616 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:49:30 Download gff for AT13819.complete
Subject Subject Range Query Range Percent Splice Strand
CG4375-RA 1..510 107..616 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:01:19 Download gff for AT13819.complete
Subject Subject Range Query Range Percent Splice Strand
CG4375-RC 1..570 107..684 96   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:16:30 Download gff for AT13819.complete
Subject Subject Range Query Range Percent Splice Strand
CG4375-RA 1..510 107..616 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:20:06 Download gff for AT13819.complete
Subject Subject Range Query Range Percent Splice Strand
CG4375-RA 1..510 107..616 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:13:25 Download gff for AT13819.complete
Subject Subject Range Query Range Percent Splice Strand
CG4375-RA 643..791 617..762 95   Plus
CG4375-RA 8..622 1..616 98 -> Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:49:29 Download gff for AT13819.complete
Subject Subject Range Query Range Percent Splice Strand
CG4375-RA 8..622 1..616 98 -> Plus
CG4375-RA 643..791 617..762 95   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:01:19 Download gff for AT13819.complete
Subject Subject Range Query Range Percent Splice Strand
CG4375-RC 1..755 1..764 96   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:16:30 Download gff for AT13819.complete
Subject Subject Range Query Range Percent Splice Strand
CG4375-RA 8..622 1..616 98 -> Plus
CG4375-RA 643..791 617..762 95   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:20:06 Download gff for AT13819.complete
Subject Subject Range Query Range Percent Splice Strand
CG4375-RA 643..793 617..764 95   Plus
CG4375-RA 8..622 1..616 98 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:08:46 Download gff for AT13819.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1026105..1026255 617..764 95 <- Minus
2L 1026276..1026890 1..616 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:08:46 Download gff for AT13819.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1026105..1026255 617..764 95 <- Minus
2L 1026276..1026890 1..616 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:08:46 Download gff for AT13819.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1026105..1026255 617..764 95 <- Minus
2L 1026276..1026890 1..616 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:01:19 Download gff for AT13819.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1026105..1026255 617..764 95 <- Minus
arm_2L 1026276..1026890 1..616 98   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:50:30 Download gff for AT13819.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1026276..1026890 1..616 98   Minus
2L 1026105..1026255 617..764 95 <- Minus

AT13819.pep Sequence

Translation from 106 to 615

> AT13819.pep
MSSKKRIDLKPASFEDLANQVFEKSKQMSMSMKEQCKLVQEYLKARLDGS
DGSDAEYNSDSYSDFESESDSDSDSDFEEDSLTDSDEQTEESSDESESEH
SEVEERTKPSDTHKTTNGGLCEKPISKVEPEQSRLVAFVAPLKSPAPRIH
RRLTMAGGVIAPHSRSSAF*

AT13819.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG4375-PA 169 CG4375-PA 1..169 1..169 857 100 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:44:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16634-PA 182 GM16634-PA 1..172 1..168 454 74.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:44:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22934-PA 182 GD22934-PA 1..171 1..167 458 76.4 Plus

AT13819.hyp Sequence

Translation from 106 to 615

> AT13819.hyp
MSSKKRIDLKPASFEDLANQVFEKSKQMSMSMKEQCKLVQEYLKARLDGS
DGSDAEYNSDSYSDFESESDSDSDSDFEEDSLTDSDEQTEESSDESESEH
SEVEERTKPSDTHKTTNGGLCEKPISKVEPEQSRLVAFVAPLKSPAPRIH
RRLTMAGGVIAPHSRSSAF*

AT13819.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:10:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG4375-PA 169 CG4375-PA 1..169 1..169 857 100 Plus