Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
AT13839.complete Sequence
501 bp assembled on 2011-03-18
GenBank Submission: BT126226.1
> AT13839.complete
AAAAAAAAATTTTAGATATGCTTTCCCCGGAGTCTCCGGAGAAACCGAAA
AAAAGTCTACATGACCTCGGGCTATTAACAAAGACTGAAGAGAAAACCAA
AGGGAGCCTTGTAGCCCTCCAGTCTATCGACAAGCGCCTGAAGACCCTCT
TGGACCGCCTTACATCTGTGGAGAACTCAATGGCTAGCTTGAATTTACCT
GCTTTGGACGAAGGTAATGGAGACACCTATGAGGACTTGGAAACATTGGA
GGATGAGTTGGACAACCAGGAGAAAGAACTTTCAGAATTTGCAAATGAAG
AAGCTATTGGGTCAAAGGTAGATGATGATGAAATTGAAGAGGTAGACAAG
GAAGTCACAGGAAATCAATAATGCGATTTTCCATTGTATAATTGTTATTA
ATGCTACGGTTTTCCATACGTTATACACGAGGAAAACGGGCAGAAAATTG
TTAATTGTTAATTGTTAGAATAAAAACCGTGGCAAAAAAAAAAAAAAAAA
A
AT13839.complete Blast Records
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:31:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 14662048..14662530 | 483..1 | 2355 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:31:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14671930..14672417 | 488..1 | 2440 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:09:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 14665030..14665517 | 488..1 | 2440 | 100 | Minus |
Blast to na_te.dros performed 2019-03-16 22:31:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
S2 | 1735 | S2 S2 1735bp | 1395..1430 | 385..419 | 105 | 80.6 | Plus |
AT13839.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:32:12 Download gff for
AT13839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 14662048..14662530 | 1..483 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-18 12:47:29 Download gff for
AT13839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43121-RA | 1..354 | 18..371 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:56:44 Download gff for
AT13839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43121-RA | 1..354 | 18..371 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:28:59 Download gff for
AT13839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43121-RA | 1..354 | 18..371 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-18 12:47:29 Download gff for
AT13839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43121-RA | 21..466 | 1..446 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:56:44 Download gff for
AT13839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43121-RA | 21..503 | 1..483 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:59 Download gff for
AT13839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43121-RA | 21..503 | 1..483 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:32:12 Download gff for
AT13839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14671935..14672417 | 1..483 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:32:12 Download gff for
AT13839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14671935..14672417 | 1..483 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:32:12 Download gff for
AT13839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14671935..14672417 | 1..483 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:56:44 Download gff for
AT13839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14665035..14665517 | 1..483 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:02:11 Download gff for
AT13839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14665035..14665517 | 1..483 | 100 | | Minus |
AT13839.hyp Sequence
Translation from 2 to 370
> AT13839.hyp
KKILDMLSPESPEKPKKSLHDLGLLTKTEEKTKGSLVALQSIDKRLKTLL
DRLTSVENSMASLNLPALDEGNGDTYEDLETLEDELDNQEKELSEFANEE
AIGSKVDDDEIEEVDKEVTGNQ*
AT13839.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43121-PA | 117 | CG43121-PA | 1..117 | 6..122 | 582 | 100 | Plus |
AT13839.pep Sequence
Translation from 2 to 370
> AT13839.pep
KKILDMLSPESPEKPKKSLHDLGLLTKTEEKTKGSLVALQSIDKRLKTLL
DRLTSVENSMASLNLPALDEGNGDTYEDLETLEDELDNQEKELSEFANEE
AIGSKVDDDEIEEVDKEVTGNQ*
AT13839.pep Blast Records
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 18:31:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG13717-PA | 97 | GG13717-PA | 18..96 | 31..121 | 143 | 50.5 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43121-PA | 117 | CG43121-PA | 1..117 | 6..122 | 582 | 100 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:31:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM24538-PA | 117 | GM24538-PA | 1..117 | 6..122 | 472 | 84.6 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:31:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD12612-PA | 117 | GD12612-PA | 1..117 | 6..122 | 462 | 81.2 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:31:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE20013-PA | 126 | GE20013-PA | 1..126 | 6..122 | 315 | 54.8 | Plus |