Clone AT13839 Report

Search the DGRC for AT13839

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:138
Well:39
Vector:pOTB7
Associated Gene/TranscriptCG43121-RA
Protein status:AT13839.pep: gold
Sequenced Size:501

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG43121-RA 2011-02-22 Manual selection by Sue Celniker

Clone Sequence Records

AT13839.complete Sequence

501 bp assembled on 2011-03-18

GenBank Submission: BT126226.1

> AT13839.complete
AAAAAAAAATTTTAGATATGCTTTCCCCGGAGTCTCCGGAGAAACCGAAA
AAAAGTCTACATGACCTCGGGCTATTAACAAAGACTGAAGAGAAAACCAA
AGGGAGCCTTGTAGCCCTCCAGTCTATCGACAAGCGCCTGAAGACCCTCT
TGGACCGCCTTACATCTGTGGAGAACTCAATGGCTAGCTTGAATTTACCT
GCTTTGGACGAAGGTAATGGAGACACCTATGAGGACTTGGAAACATTGGA
GGATGAGTTGGACAACCAGGAGAAAGAACTTTCAGAATTTGCAAATGAAG
AAGCTATTGGGTCAAAGGTAGATGATGATGAAATTGAAGAGGTAGACAAG
GAAGTCACAGGAAATCAATAATGCGATTTTCCATTGTATAATTGTTATTA
ATGCTACGGTTTTCCATACGTTATACACGAGGAAAACGGGCAGAAAATTG
TTAATTGTTAATTGTTAGAATAAAAACCGTGGCAAAAAAAAAAAAAAAAA
A

AT13839.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:31:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 14662048..14662530 483..1 2355 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:31:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14671930..14672417 488..1 2440 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:09:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 14665030..14665517 488..1 2440 100 Minus
Blast to na_te.dros performed 2019-03-16 22:31:20
Subject Length Description Subject Range Query Range Score Percent Strand
S2 1735 S2 S2 1735bp 1395..1430 385..419 105 80.6 Plus

AT13839.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:32:12 Download gff for AT13839.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 14662048..14662530 1..483 99   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-18 12:47:29 Download gff for AT13839.complete
Subject Subject Range Query Range Percent Splice Strand
CG43121-RA 1..354 18..371 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:56:44 Download gff for AT13839.complete
Subject Subject Range Query Range Percent Splice Strand
CG43121-RA 1..354 18..371 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:28:59 Download gff for AT13839.complete
Subject Subject Range Query Range Percent Splice Strand
CG43121-RA 1..354 18..371 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-18 12:47:29 Download gff for AT13839.complete
Subject Subject Range Query Range Percent Splice Strand
CG43121-RA 21..466 1..446 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:56:44 Download gff for AT13839.complete
Subject Subject Range Query Range Percent Splice Strand
CG43121-RA 21..503 1..483 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:59 Download gff for AT13839.complete
Subject Subject Range Query Range Percent Splice Strand
CG43121-RA 21..503 1..483 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:32:12 Download gff for AT13839.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14671935..14672417 1..483 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:32:12 Download gff for AT13839.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14671935..14672417 1..483 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:32:12 Download gff for AT13839.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14671935..14672417 1..483 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:56:44 Download gff for AT13839.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14665035..14665517 1..483 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:02:11 Download gff for AT13839.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14665035..14665517 1..483 100   Minus

AT13839.hyp Sequence

Translation from 2 to 370

> AT13839.hyp
KKILDMLSPESPEKPKKSLHDLGLLTKTEEKTKGSLVALQSIDKRLKTLL
DRLTSVENSMASLNLPALDEGNGDTYEDLETLEDELDNQEKELSEFANEE
AIGSKVDDDEIEEVDKEVTGNQ*

AT13839.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG43121-PA 117 CG43121-PA 1..117 6..122 582 100 Plus

AT13839.pep Sequence

Translation from 2 to 370

> AT13839.pep
KKILDMLSPESPEKPKKSLHDLGLLTKTEEKTKGSLVALQSIDKRLKTLL
DRLTSVENSMASLNLPALDEGNGDTYEDLETLEDELDNQEKELSEFANEE
AIGSKVDDDEIEEVDKEVTGNQ*

AT13839.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 18:31:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13717-PA 97 GG13717-PA 18..96 31..121 143 50.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG43121-PA 117 CG43121-PA 1..117 6..122 582 100 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:31:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24538-PA 117 GM24538-PA 1..117 6..122 472 84.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:31:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12612-PA 117 GD12612-PA 1..117 6..122 462 81.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:31:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20013-PA 126 GE20013-PA 1..126 6..122 315 54.8 Plus