Clone AT13868 Report

Search the DGRC for AT13868

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:138
Well:68
Vector:pOTB7
Associated Gene/TranscriptCG18004-RB
Protein status:AT13868.pep: gold
Sequenced Size:1187

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18004 2009-06-08 Manual selection by Joe Carlson

Clone Sequence Records

AT13868.complete Sequence

1187 bp assembled on 2009-08-05

GenBank Submission: BT089032.1

> AT13868.complete
CACAACTGTTGTGCATATTAGCTTACAGATTATTGTTATGCTCTTTTCAA
ATCAAAGGTTTTCTTTCACAAGAGATCATTGTTTTAAATTTATATAAATT
TCTTAAATGGTGAAACTCAATTTTTAAATTAATGATAACCTAGAACGGTA
AATAGTCGTCCGATAACAATGCTTGGGTTGATGATGTGCGAAAAACTGGC
AGTTATCGCAATGCTCCCATCTCTATGAGATCCCTGGCCAACCAGGAGGA
TGGCGCCATAAAGGACGAGCCGCCGAGCGACGACGAGCCCGCACAGCCCG
CCAGAGATCGCGTCCCGCCAATTTCCCGCGGAGCAGCGCCCGCTAGCTCA
TCCTCCGTATCCGCGGGCCTGGGCGCAGGCGAGACTGACTTCAAGGAGCG
CTACAAGAACCTCAAGAAGAAGCTGAAGTTCCTCATCTATGAGAACGAGT
ACTTCCAGGATCTATTGCACACCAACCAGCGGCGTCTGCTGAAAGTTTCC
CGGGATCGTACCTTCCTGCTGGACCGTCTGCTGGTGTACGAGAAGCCGGC
CAAGGACTCTAGCGACTCGGATGCCACCGACAGCTCCGATTCGGAGCCAG
CTTCTACGTCCGGCGTTGCCGGCGGATCGCAAACATCCAAGGACGCCATT
CGGCGCAAGCACAAAGACAAGGGGGCACCAGGAATTCCAGGTGTGCCTCC
GCACATGCCCACAGTGGGCGCCCCACGAGGTCGAAGACGAAAAATCCTAA
CCGGAATGTTGCCCGCGAACCATGGAATCCCAGCAATTGCTGCGAAAAAA
CAACTTACCGCCACGGTGTCACCTTCGCAGCAGCCACCGCAACTACAGAC
TGCACCGAAGGATGTGTCGCCCGGCCTCAGCCAAGCGGAGATTGCCCGCC
AGCTGCAGGAGCGACGACCGACGCCGTTGGAGCTATTGAGTCCGGAATGC
ACTTCGGCCACCGTGCCCACAACGATGCTCAGCGATGAAAGCCCCTCTAA
GTGTTATCCCAATGAAAGCCTGCAGCATCTGATGGAGGACGACTCTCACT
CGCACGAGGTGGCCGCCGAGGAGTGCGTGCCCATGGAGTACACAAGTTAA
TATTCTTTACTGAGCTAAATATGAAAATACGAAAATAAATTAACTAGATC
CAGCTGGATTGATATATTAAAAAAAAAAAAAAAAAAA

AT13868.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:29:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG18004-RB 1168 CG18004-RB 1..1168 1..1168 5825 99.9 Plus
CG18004-RA 1250 CG18004-RA 201..1142 228..1169 4695 99.8 Plus
CG18004.a 1133 CG18004.a 315..1025 459..1169 3540 99.8 Plus
CG18004.a 1133 CG18004.a 102..316 228..442 1075 100 Plus
CG18004-RA 1250 CG18004-RA 1..128 102..229 640 100 Plus
CG18004.a 1133 CG18004.a 1..29 201..229 145 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:10:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 6773181..6773743 441..1003 2800 99.8 Plus
chr2R 21145070 chr2R 6772610..6772838 1..229 1145 100 Plus
chr2R 21145070 chr2R 6772911..6773124 228..441 1070 100 Plus
chr2R 21145070 chr2R 6773801..6773966 1003..1168 830 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:48:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:10:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10885590..10886152 441..1003 2800 99.8 Plus
2R 25286936 2R 10885019..10885247 1..229 1145 100 Plus
2R 25286936 2R 10885320..10885533 228..441 1070 100 Plus
2R 25286936 2R 10886210..10886376 1003..1169 835 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:24:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 10886789..10887351 441..1003 2800 99.8 Plus
2R 25260384 2R 10886218..10886446 1..229 1145 100 Plus
2R 25260384 2R 10886519..10886732 228..441 1070 100 Plus
2R 25260384 2R 10887409..10887575 1003..1169 835 100 Plus
Blast to na_te.dros performed on 2019-03-16 18:10:27 has no hits.

AT13868.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:11:34 Download gff for AT13868.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 6772610..6772838 1..229 100 -> Plus
chr2R 6772913..6773123 230..440 100 -> Plus
chr2R 6773181..6773743 441..1003 99 -> Plus
chr2R 6773802..6773966 1004..1168 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:12:56 Download gff for AT13868.complete
Subject Subject Range Query Range Percent Splice Strand
CG18004-RB 1..876 225..1100 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:56:41 Download gff for AT13868.complete
Subject Subject Range Query Range Percent Splice Strand
CG18004-RB 1..876 225..1100 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:46:18 Download gff for AT13868.complete
Subject Subject Range Query Range Percent Splice Strand
CG18004-RB 1..876 225..1100 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:31:59 Download gff for AT13868.complete
Subject Subject Range Query Range Percent Splice Strand
CG18004-RB 1..876 225..1100 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-05 17:38:54 Download gff for AT13868.complete
Subject Subject Range Query Range Percent Splice Strand
CG18004-RB 1..1168 1..1168 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:56:41 Download gff for AT13868.complete
Subject Subject Range Query Range Percent Splice Strand
CG18004-RB 1..1168 1..1168 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:18 Download gff for AT13868.complete
Subject Subject Range Query Range Percent Splice Strand
CG18004-RB 1..1168 1..1168 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:31:59 Download gff for AT13868.complete
Subject Subject Range Query Range Percent Splice Strand
CG18004-RB 1..1168 1..1168 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:11:34 Download gff for AT13868.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10886211..10886375 1004..1168 100   Plus
2R 10885019..10885247 1..229 100 -> Plus
2R 10885322..10885532 230..440 100 -> Plus
2R 10885590..10886152 441..1003 99 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:11:34 Download gff for AT13868.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10886211..10886375 1004..1168 100   Plus
2R 10885019..10885247 1..229 100 -> Plus
2R 10885322..10885532 230..440 100 -> Plus
2R 10885590..10886152 441..1003 99 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:11:34 Download gff for AT13868.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10886211..10886375 1004..1168 100   Plus
2R 10885019..10885247 1..229 100 -> Plus
2R 10885322..10885532 230..440 100 -> Plus
2R 10885590..10886152 441..1003 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:18 Download gff for AT13868.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6773716..6773880 1004..1168 100   Plus
arm_2R 6772524..6772752 1..229 100 -> Plus
arm_2R 6772827..6773037 230..440 100 -> Plus
arm_2R 6773095..6773657 441..1003 99 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:48:13 Download gff for AT13868.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10887410..10887574 1004..1168 100   Plus
2R 10886218..10886446 1..229 100 -> Plus
2R 10886521..10886731 230..440 100 -> Plus
2R 10886789..10887351 441..1003 99 -> Plus

AT13868.hyp Sequence

Translation from 224 to 1099

> AT13868.hyp
MRSLANQEDGAIKDEPPSDDEPAQPARDRVPPISRGAAPASSSSVSAGLG
AGETDFKERYKNLKKKLKFLIYENEYFQDLLHTNQRRLLKVSRDRTFLLD
RLLVYEKPAKDSSDSDATDSSDSEPASTSGVAGGSQTSKDAIRRKHKDKG
APGIPGVPPHMPTVGAPRGRRRKILTGMLPANHGIPAIAAKKQLTATVSP
SQQPPQLQTAPKDVSPGLSQAEIARQLQERRPTPLELLSPECTSATVPTT
MLSDESPSKCYPNESLQHLMEDDSHSHEVAAEECVPMEYTS*

AT13868.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:10:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG18004-PB 291 CG18004-PB 1..291 1..291 1499 100 Plus
CG18004-PA 297 CG18004-PA 8..297 2..291 1494 100 Plus
CG18004-PD 291 CG18004-PD 8..291 2..291 1443 97.9 Plus

AT13868.pep Sequence

Translation from 224 to 1099

> AT13868.pep
MRSLANQEDGAIKDEPPSDDEPAQPARDRVPPISRGAAPASSSSVSAGLG
AGETDFKERYKNLKKKLKFLIYENEYFQDLLHTNQRRLLKVSRDRTFLLD
RLLVYEKPAKDSSDSDATDSSDSEPASTSGVAGGSQTSKDAIRRKHKDKG
APGIPGVPPHMPTVGAPRGRRRKILTGMLPANHGIPAIAAKKQLTATVSP
SQQPPQLQTAPKDVSPGLSQAEIARQLQERRPTPLELLSPECTSATVPTT
MLSDESPSKCYPNESLQHLMEDDSHSHEVAAEECVPMEYTS*

AT13868.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:36:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13783-PA 299 GF13783-PA 8..299 2..291 956 78.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:36:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20156-PA 297 GG20156-PA 8..297 2..291 1239 95.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:36:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20557-PA 313 GH20557-PA 8..313 2..291 671 56.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:06:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG18004-PB 291 CG18004-PB 1..291 1..291 1499 100 Plus
CG18004-PA 297 CG18004-PA 8..297 2..291 1494 100 Plus
CG18004-PD 291 CG18004-PD 8..291 2..291 1443 97.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:36:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18826-PA 305 GI18826-PA 67..305 55..291 701 67.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:36:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20093-PA 295 GL20093-PA 8..295 2..291 1001 73.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:36:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24928-PA 295 GA24928-PA 8..295 2..291 995 72.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:36:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21245-PA 297 GM21245-PA 8..297 2..291 1494 98.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:36:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10763-PA 252 GD10763-PA 8..252 2..291 1198 82.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:36:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21854-PA 298 GJ21854-PA 8..298 2..291 724 61 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:36:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20638-PA 326 GK20638-PA 8..326 2..291 629 52.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:36:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12846-PA 297 GE12846-PA 8..297 2..291 1215 94.1 Plus