Clone AT13886 Report

Search the DGRC for AT13886

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:138
Well:86
Vector:pOTB7
Associated Gene/TranscriptCG30376-RA
Protein status:AT13886.pep: gold
Sequenced Size:1018

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG30376 2003-01-01 Sim4 clustering to Release 3
CG30376 2003-02-13 Blastp of sequenced clone
CG30376 2008-04-29 Release 5.5 accounting
CG30376 2008-08-15 Release 5.9 accounting
CG30376 2008-12-18 5.12 accounting

Clone Sequence Records

AT13886.complete Sequence

1018 bp (1018 high quality bases) assembled on 2003-02-13

GenBank Submission: BT003804

> AT13886.complete
AATTTTCTTGCCCGAGCGCCTTGTTTTTATTAAATTAAAATTTTAGTAGA
CCCAATTTCGGCCGAAGAATTTGAGTCTTATCATAAATTAGCCGGTTAAA
TCAGAGAATTTAGGGGAACCAGAAATAACAAAGATGCCAATATTCGTGAA
AAACCTGCCATGCATTCGCCACCTGGCCAAGCGGAGTCTAATTGAGGGGC
GGCGCTGGATATCGGGCCTAGAGAAAGGTCAAAACAGCGCAGCCCAAAAC
GTAAATCCCTGCCACAAGGACTGGCCCATGAGAGAGGAGTCTTTTGCGGC
AGCCCAGCTGCTCCGCCAGAGGCAGCAGAACCGCCGGTGGAGCAACAACT
ACTCCGGCCTGGACTCCGCCATGTTCCGACCAGTTGCCAAACCGGATGAG
ATGGTGCCCCGCCGCAACAATGTGGTGGCCGCCCAGAACGCGGCCAGGAG
GCGGAACTTCAAGTCGGCGCAGGTGTCCCAATACCAGCAGAGGCAGGAGG
AAGAGCAAAGACTGGACGGCGATCCAGAAGCCAAGGCCGAGGAGCACGAC
TACGAGTCGGATCTGGAGGTTCGATCGGTACGGGAGACCGTTTTCGGACC
GCCGGAGGACAACTCGGAGGAGGAGATGGATCGCGCCCGGGCTGAGCAGG
AGCTTCTCCAACGCGTGGCCAGCGCCTCCAAGCAAACGGAACGTTTGCCC
GATAGCGCCTCCATTTCCCGAAAGGTCATCTCGCCATACAACTCCTACCG
CAGCCATCGCACCCGCTGGGCGGAGTTCCGGCACAACATGATCTTTGGCC
GTACGAGTTACTGAGCCAACAGGAGCCTCAACAGAAGGTTCATCCTTATC
CGTTGACGTCTCCCTTTCCGGAAGTGTGAAATTTACGGTTGCATTTTTAC
GCGATTTTCAAGAGCAAATAAAAAGTTTGGTCTTCAAAATTAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAA

AT13886.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:22:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG30376-RA 814 CG30376-RA 1..814 1..814 4070 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:49:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4150981..4151921 941..1 4705 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:48:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:49:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8263485..8264426 942..1 4710 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:00:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 8264684..8265625 942..1 4710 100 Minus
Blast to na_te.dros performed on 2019-03-16 05:49:24 has no hits.

AT13886.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:50:29 Download gff for AT13886.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4150981..4151921 1..941 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:04:59 Download gff for AT13886.complete
Subject Subject Range Query Range Percent Splice Strand
CG30376-RA 1..681 134..814 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:52:43 Download gff for AT13886.complete
Subject Subject Range Query Range Percent Splice Strand
CG30376-RA 1..681 134..814 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:43:16 Download gff for AT13886.complete
Subject Subject Range Query Range Percent Splice Strand
CG30376-RA 1..681 134..814 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:43:51 Download gff for AT13886.complete
Subject Subject Range Query Range Percent Splice Strand
CG30376-RA 1..681 134..814 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:08:30 Download gff for AT13886.complete
Subject Subject Range Query Range Percent Splice Strand
CG30376-RA 1..681 134..814 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:06:50 Download gff for AT13886.complete
Subject Subject Range Query Range Percent Splice Strand
CG30376-RA 1..814 1..814 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:52:42 Download gff for AT13886.complete
Subject Subject Range Query Range Percent Splice Strand
CG30376-RA 1..941 1..941 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:43:16 Download gff for AT13886.complete
Subject Subject Range Query Range Percent Splice Strand
CG30376-RA 1..941 1..941 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:43:51 Download gff for AT13886.complete
Subject Subject Range Query Range Percent Splice Strand
CG30376-RA 1..814 1..814 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:08:30 Download gff for AT13886.complete
Subject Subject Range Query Range Percent Splice Strand
CG30376-RA 1..941 1..941 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:50:29 Download gff for AT13886.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8263486..8264426 1..941 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:50:29 Download gff for AT13886.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8263486..8264426 1..941 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:50:29 Download gff for AT13886.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8263486..8264426 1..941 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:43:16 Download gff for AT13886.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4150991..4151931 1..941 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:14:39 Download gff for AT13886.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8264685..8265625 1..941 100   Minus

AT13886.pep Sequence

Translation from 133 to 813

> AT13886.pep
MPIFVKNLPCIRHLAKRSLIEGRRWISGLEKGQNSAAQNVNPCHKDWPMR
EESFAAAQLLRQRQQNRRWSNNYSGLDSAMFRPVAKPDEMVPRRNNVVAA
QNAARRRNFKSAQVSQYQQRQEEEQRLDGDPEAKAEEHDYESDLEVRSVR
ETVFGPPEDNSEEEMDRARAEQELLQRVASASKQTERLPDSASISRKVIS
PYNSYRSHRTRWAEFRHNMIFGRTSY*

AT13886.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:36:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12600-PA 247 GF12600-PA 1..247 1..226 422 43 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:36:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10659-PA 238 GG10659-PA 1..238 1..226 977 82.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:36:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20824-PA 204 GH20824-PA 33..204 39..226 238 34.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG30376-PA 226 CG30376-PA 1..226 1..226 1178 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:36:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20922-PA 209 GI20922-PA 6..209 5..226 280 35.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:36:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10876-PA 245 GL10876-PA 1..245 1..226 212 34.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:37:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15798-PA 245 GA15798-PA 1..245 1..226 212 34.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:37:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20704-PA 226 GM20704-PA 1..226 1..226 979 91.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:37:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10174-PA 226 GD10174-PA 1..226 1..226 974 91.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:37:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20651-PA 217 GJ20651-PA 29..217 29..226 288 37.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:37:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15767-PA 267 GK15767-PA 158..267 108..226 188 39.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:37:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23172-PA 232 GE23172-PA 1..232 1..226 1037 88.8 Plus

AT13886.hyp Sequence

Translation from 133 to 813

> AT13886.hyp
MPIFVKNLPCIRHLAKRSLIEGRRWISGLEKGQNSAAQNVNPCHKDWPMR
EESFAAAQLLRQRQQNRRWSNNYSGLDSAMFRPVAKPDEMVPRRNNVVAA
QNAARRRNFKSAQVSQYQQRQEEEQRLDGDPEAKAEEHDYESDLEVRSVR
ETVFGPPEDNSEEEMDRARAEQELLQRVASASKQTERLPDSASISRKVIS
PYNSYRSHRTRWAEFRHNMIFGRTSY*

AT13886.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:10:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG30376-PA 226 CG30376-PA 1..226 1..226 1178 100 Plus