Clone AT13922 Report

Search the DGRC for AT13922

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:139
Well:22
Vector:pOTB7
Associated Gene/TranscriptKr-h2-RA
Protein status:AT13922.pep: gold
Preliminary Size:1058
Sequenced Size:1605

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9159 2002-01-01 Sim4 clustering to Release 2
CG9159 2002-05-31 Blastp of sequenced clone
CG9159 2003-01-01 Sim4 clustering to Release 3
Kr-h2 2008-04-29 Release 5.5 accounting
Kr-h2 2008-08-15 Release 5.9 accounting
Kr-h2 2008-12-18 5.12 accounting

Clone Sequence Records

AT13922.complete Sequence

1605 bp (1605 high quality bases) assembled on 2002-05-31

GenBank Submission: AY118281

> AT13922.complete
AGAAAGCAGTGCGATACAAATCGGTGGCAGCCCTGTGTCAGTTCGTTTTT
ATCGAACTAGATCAACTTTGCCCGTCCATCTCTAGTTCGCACGGGAGCCC
CGACCAAACTGATACGTATTAATTTACGAGAAAAACTTGCGTTTAATTCG
AAGTCACATCATATCGCAGGCTGGAACGTACCTGCTGCTAAGTAAGAGAC
TGAATACTGAACGGAAAGCGAGCACGAAAGCTACTTCATCATGAGCGCAC
CCACCGACCAACCACCGCGCTCCGAGGGCGCTCAGACCAACAGCTCCGAG
AGATCCTCACAGCAGCAGGAGCAACCGCAGCAATCTCAATCACAGAACGT
ACCGGCCAAGCTCCTGCAGCATTTTCAGACAAATCGCATAGATTCCGCGC
TATGGGCACTACGTCTGCTGGTCATCTTCTTCACCGTCAGCTACGTGCTG
CCCATCTTTACCTCACAACAGAGCGCATTCAGCAAGGTTATGCTGGCTAA
TGCCGCCATCTCTGCCTTGCGTTTGCACCAGAGATTGCCCGCGTTCGCGT
TCAGTCGGGAGTTCCTTGCTCGACTGTTTGCCGAGGACTCGTGTCATTAC
ATGATGTACTCCCTGATCTTCTTCAACATCCGCCCATCGCTGCTGGTTCT
GATTCCCGTGCTGCTGTACTCAGTTCTGCACGCCTCAAGCTACTCGCTTA
AGCTGCTGGATCTGATTGGCCAGAACTCGTGGTGGGGTGCCCGTTTCATC
ATCTCCATTGTAGAGTTTCAGGCGGCGAATATCCTGAAGGCAACTGCATT
CTGCGAGATCTTCATCATGCCTTACGCCATTGTGCTGGCCTTCATGAACC
ACGCTGGATTGATGACGCCCGTTATTTACTACCACTATCTGGTGATGCGC
TACAGCTCGCGACGAAATCCCTATCCGCGCAACGCTTTCGCTGAGCTGCG
TATAACCTTCGAGGCGCTGGCCGCCCGCTCACCGCCCGCCTTTGCCAAGA
TCATCCGTGGAGGCATTGGGTTCGTCAACCGCTTGGCGCCGCAGCTACAG
CCGGCTGCAGCGCAAGAGTAGACACGACAAGCAGCTAACGGAAAACAACA
ATCAAATGACATATGAATAAGGCTATTTAAATACCAGTTCACTTGCATAG
ATGTTCACACAGGAGATTGGGGTTCATCCGTTTTATTTGTTAGCCGAAAT
TCGTTGCACCTTTTCGAAGCGAAACTAGTTGTTTTACACCAGATTGTTTC
GGCATTTAAGTTTAAATTTATCTATATATTATTGTAGTTTTTTTTGAGTA
CATCATCATGCTTTTTTCAACAACACACAATGTGGCAACGCACGAATTCC
GCCATGGAGGATCAACGGCGCGTATTACTATATTTATATCCCAAAAACAA
ATTATTTCAATTTGTTTTGCTTTAACTTATATGTTCAAAATACTGATCAA
ACGAAAAACATGGACAGCTAACGCTGTTAGTAATTATTTACATATATTTT
GTATGAGTGTGTAAAGATTCGAAGAACCAAACAAAGTAAAGTAAAGTTAA
ATAAAACATTTTGAGAAGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAA

AT13922.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:56:14
Subject Length Description Subject Range Query Range Score Percent Strand
Kr-h2.f 2240 Kr-h2.f 145..1715 1..1571 7855 100 Plus
Kr-h2-RA 1758 Kr-h2-RA 145..1715 1..1571 7855 100 Plus
Kr-h2.d 1587 Kr-h2.d 205..1579 197..1571 6875 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:26:02
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6072288..6073012 846..1570 3625 100 Plus
chr2L 23010047 chr2L 6071463..6071727 197..461 1325 100 Plus
chr2L 23010047 chr2L 6071785..6072034 462..711 1250 100 Plus
chr2L 23010047 chr2L 6070041..6070238 1..198 990 100 Plus
chr2L 23010047 chr2L 6072091..6072225 712..846 675 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:48:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:26:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6073237..6073962 846..1571 3630 100 Plus
2L 23513712 2L 6072412..6072676 197..461 1325 100 Plus
2L 23513712 2L 6072734..6072983 462..711 1250 100 Plus
2L 23513712 2L 6070990..6071187 1..198 990 100 Plus
2L 23513712 2L 6073040..6073174 712..846 675 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:28:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6073237..6073962 846..1571 3630 100 Plus
2L 23513712 2L 6072412..6072676 197..461 1325 100 Plus
2L 23513712 2L 6072734..6072983 462..711 1250 100 Plus
2L 23513712 2L 6070990..6071187 1..198 990 100 Plus
2L 23513712 2L 6073040..6073174 712..846 675 100 Plus
Blast to na_te.dros performed 2019-03-16 22:26:00
Subject Length Description Subject Range Query Range Score Percent Strand
transib3 2883 transib3 TRANSIB3 2883bp 53..139 1254..1341 113 63.3 Plus

AT13922.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:27:04 Download gff for AT13922.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6070041..6070238 1..198 100 -> Plus
chr2L 6071465..6071727 199..461 100 -> Plus
chr2L 6071785..6072034 462..711 100 -> Plus
chr2L 6072091..6072224 712..845 100 -> Plus
chr2L 6072288..6073012 846..1570 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:05:07 Download gff for AT13922.complete
Subject Subject Range Query Range Percent Splice Strand
Kr-h2-RA 1..831 241..1071 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:34:44 Download gff for AT13922.complete
Subject Subject Range Query Range Percent Splice Strand
Kr-h2-RB 1..831 241..1071 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:11:02 Download gff for AT13922.complete
Subject Subject Range Query Range Percent Splice Strand
Kr-h2-RA 1..831 241..1071 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:26:19 Download gff for AT13922.complete
Subject Subject Range Query Range Percent Splice Strand
Kr-h2-RA 1..831 241..1071 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:39:11 Download gff for AT13922.complete
Subject Subject Range Query Range Percent Splice Strand
Kr-h2-RA 1..831 241..1071 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:06:02 Download gff for AT13922.complete
Subject Subject Range Query Range Percent Splice Strand
Kr-h2-RA 2..1571 1..1570 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:34:44 Download gff for AT13922.complete
Subject Subject Range Query Range Percent Splice Strand
Kr-h2-RA 1..1570 1..1570 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:11:02 Download gff for AT13922.complete
Subject Subject Range Query Range Percent Splice Strand
Kr-h2-RA 1..1570 1..1570 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:26:19 Download gff for AT13922.complete
Subject Subject Range Query Range Percent Splice Strand
Kr-h2-RA 2..1571 1..1570 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:39:11 Download gff for AT13922.complete
Subject Subject Range Query Range Percent Splice Strand
Kr-h2-RA 1..1570 1..1570 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:27:04 Download gff for AT13922.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6072414..6072676 199..461 100 -> Plus
2L 6072734..6072983 462..711 100 -> Plus
2L 6073040..6073173 712..845 100 -> Plus
2L 6070990..6071187 1..198 100 -> Plus
2L 6073237..6073961 846..1570 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:27:04 Download gff for AT13922.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6072414..6072676 199..461 100 -> Plus
2L 6072734..6072983 462..711 100 -> Plus
2L 6073040..6073173 712..845 100 -> Plus
2L 6070990..6071187 1..198 100 -> Plus
2L 6073237..6073961 846..1570 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:27:04 Download gff for AT13922.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6072414..6072676 199..461 100 -> Plus
2L 6072734..6072983 462..711 100 -> Plus
2L 6073040..6073173 712..845 100 -> Plus
2L 6070990..6071187 1..198 100 -> Plus
2L 6073237..6073961 846..1570 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:11:02 Download gff for AT13922.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6070990..6071187 1..198 100 -> Plus
arm_2L 6072414..6072676 199..461 100 -> Plus
arm_2L 6072734..6072983 462..711 100 -> Plus
arm_2L 6073040..6073173 712..845 100 -> Plus
arm_2L 6073237..6073961 846..1570 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:58:46 Download gff for AT13922.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6072414..6072676 199..461 100 -> Plus
2L 6072734..6072983 462..711 100 -> Plus
2L 6073040..6073173 712..845 100 -> Plus
2L 6073237..6073961 846..1570 100   Plus
2L 6070990..6071187 1..198 100 -> Plus

AT13922.pep Sequence

Translation from 240 to 1070

> AT13922.pep
MSAPTDQPPRSEGAQTNSSERSSQQQEQPQQSQSQNVPAKLLQHFQTNRI
DSALWALRLLVIFFTVSYVLPIFTSQQSAFSKVMLANAAISALRLHQRLP
AFAFSREFLARLFAEDSCHYMMYSLIFFNIRPSLLVLIPVLLYSVLHASS
YSLKLLDLIGQNSWWGARFIISIVEFQAANILKATAFCEIFIMPYAIVLA
FMNHAGLMTPVIYYHYLVMRYSSRRNPYPRNAFAELRITFEALAARSPPA
FAKIIRGGIGFVNRLAPQLQPAAAQE*

AT13922.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:11:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14503-PA 277 GF14503-PA 1..266 1..265 1141 87.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:11:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23928-PA 276 GG23928-PA 1..265 1..265 1252 95.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:11:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10802-PA 292 GH10802-PA 53..281 36..264 1103 90 Plus
Dgri\GH24936-PA 593 GH24936-PA 1..46 121..166 178 78.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:23
Subject Length Description Subject Range Query Range Score Percent Strand
Kr-h2-PC 276 CG9159-PC 1..276 1..276 1396 100 Plus
Kr-h2-PB 276 CG9159-PB 1..276 1..276 1396 100 Plus
Kr-h2-PA 276 CG9159-PA 1..276 1..276 1396 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:11:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17312-PA 285 GI17312-PA 46..275 36..265 1070 91.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:11:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19063-PA 279 GL19063-PA 1..279 1..275 1092 83.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:11:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21582-PA 279 GA21582-PA 1..279 1..275 1092 83.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:11:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18601-PA 276 GM18601-PA 1..276 1..276 1409 97.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:11:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23385-PA 276 GD23385-PA 1..276 1..276 1409 97.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:11:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15800-PA 293 GJ15800-PA 54..283 36..265 1101 89.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:11:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14725-PA 282 GK14725-PA 1..272 1..265 1127 82 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:11:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25910-PA 276 GE25910-PA 1..265 1..265 1252 95.1 Plus

AT13922.hyp Sequence

Translation from 240 to 1070

> AT13922.hyp
MSAPTDQPPRSEGAQTNSSERSSQQQEQPQQSQSQNVPAKLLQHFQTNRI
DSALWALRLLVIFFTVSYVLPIFTSQQSAFSKVMLANAAISALRLHQRLP
AFAFSREFLARLFAEDSCHYMMYSLIFFNIRPSLLVLIPVLLYSVLHASS
YSLKLLDLIGQNSWWGARFIISIVEFQAANILKATAFCEIFIMPYAIVLA
FMNHAGLMTPVIYYHYLVMRYSSRRNPYPRNAFAELRITFEALAARSPPA
FAKIIRGGIGFVNRLAPQLQPAAAQE*

AT13922.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:10:26
Subject Length Description Subject Range Query Range Score Percent Strand
Kr-h2-PC 276 CG9159-PC 1..276 1..276 1396 100 Plus
Kr-h2-PB 276 CG9159-PB 1..276 1..276 1396 100 Plus
Kr-h2-PA 276 CG9159-PA 1..276 1..276 1396 100 Plus