Clone AT13927 Report

Search the DGRC for AT13927

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:139
Well:27
Vector:pOTB7
Associated Gene/TranscriptTrp1-RC
Protein status:AT13927.pep: gold
Sequenced Size:1529

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Trp1-RB 2009-06-22 Replacement based on scoring

Clone Sequence Records

AT13927.complete Sequence

1529 bp assembled on 2009-08-05

GenBank Submission: BT089033.1

> AT13927.complete
ATGCAACACGTCACGGCTAAGAAAAACTACAACCGCTTCTGGAATAGTTG
TTTCTATTTATATAGTTCGCAGTTTTTAAGTTACGCATATTAATTCTCGT
AATGAGTGGAGAGGAGGAGTACTTCCAGGAGGAGGAAGAAGAGGAGCAGG
AGCAGGATATTTACGACGATGGCACGGAATACACCGAACCGGGTGCCCAG
AAGGTAGACAAGCCGTCAAAGGACGAGAAGAACGTGGCCAAGTGGCTGAA
GAAGAACGTTAAGACGAAGAAGACCAAATTCCTGAGCCACATCGTCGAAT
ACTTCACCTCCAGCAAGGCCATCGATGCTCTGCTAAAGTCCAAATTCACC
GAAGGCAGCAATCCGCTTTTCACCACCCGGGAGCAGGTAATCGAGTTTCT
AGACGTGATGCTGGAGCACAAGTTCTTCCATCGCGCCAAGAAGGTGCCCG
TCACTCTGGAGGAGATCAGAGGAAAGTCTGGAGGCGACAAGAAGGCGGAC
AAGGAGAAGACCCAAGATAAGGAAAAGGACAAGGCAAAGGATGAGAAGAA
GGATACCGATCCGGAAGGCGATAATGGCCAAGGAGACGGAGGTGCGTCTG
GCAACGAAAAAGAGAAGGAGAAAAAGGAGAAGAAAAAGCGCAAGATCCGC
CTGGACATGCATCCTGAGCAGATCTTCGTGGACGGCTCCGAGGCATACGT
CTGGATCTACGATCCCATACCGCTCCACTACTGGATATTCGGCTTCATCC
TGCTACTTGGCGCCGTTGGCATTTGCCTATTCCCTCTGTGGCCTCCACTG
CTACGCAAGGGTGTCTACTACTTGTCCATTGCGGCTGCCGGCTTCCTTGT
TTTCATCCTGGCTCTGACAATTGTACGTCTAATTGTGTTCATCATCGTGT
GGGCATTAACCGGCGGCAAGTTGCACTTCTGGATCTTCCCCAACCTGACT
GAGGATGTGAGCTTCTTCGCCTCCTTCTGGCCACTATATGAGAGTAACTA
TAACAGTGACCCAAATAATTCGTCCGCCAAGACCGACAAGAAATCGAAAT
CGAAGGACAAGAAGAAGGAAAAAGAAAGCGATGCCGAGGACACAGCCGTG
GATGCGGATGGAGACGCTGACGGTGATGTGGATGCTGAGGTTTCCACGCT
TGAACCAGAGAAAATCGAGCTCATCAAAGAACATGACACCGACATGGAGA
TCCGCAAACGTCGCAAAGTGGGTGCCGATGACTACGAGGAAGACGATGTG
GATGAAGAAGAAACGAAGGCGCAGCCCAAGGATTCCAAAGCTGGGTAAGA
CGGAACCGCTCAGTAATGACCAGGATTCCTGCTTTATTGCTCGAATTTGT
ATTTATAATTTCTTTTATTTCCGTCGAACTTTTGGTTGTATGTTTTTCAT
ACAGTAAATCATATTGAATAGCGCAAAAGACATACATTAACTTTAGCTTT
TAATTGTAAATCCTTTGTTCCTTAATAAATATTATTGTATAATTAAAATA
CATTAAAAAAAAAAAAAAAAAAAAAAAAA

AT13927.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
Trp1-RB 2118 Trp1-RB 44..1337 1..1294 6455 99.9 Plus
Trp1.c 1959 Trp1.c 69..1187 176..1294 5580 99.9 Plus
Trp1.b 2015 Trp1.b 126..1243 177..1294 5575 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:44:53
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10009701..10010517 176..992 4085 100 Plus
chr2L 23010047 chr2L 10010570..10011083 991..1504 2555 99.8 Plus
chr2L 23010047 chr2L 10009347..10009523 1..177 885 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:48:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:44:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10010736..10011552 176..992 4085 100 Plus
2L 23513712 2L 10011605..10012120 991..1506 2535 99.4 Plus
2L 23513712 2L 10010382..10010558 1..177 885 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:23:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10010736..10011552 176..992 4085 100 Plus
2L 23513712 2L 10011605..10012120 991..1506 2535 99.4 Plus
2L 23513712 2L 10010382..10010558 1..177 885 100 Plus
Blast to na_te.dros performed 2019-03-16 21:44:51
Subject Length Description Subject Range Query Range Score Percent Strand
TAHRE 10463 TAHRE OSV 10463bp 6452..6494 1036..1077 113 76.7 Plus

AT13927.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:45:34 Download gff for AT13927.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10009702..10010010 177..485 100 == Plus
chr2L 10010164..10010517 639..992 100 -> Plus
chr2L 10010572..10011045 993..1466 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:12:45 Download gff for AT13927.complete
Subject Subject Range Query Range Percent Splice Strand
Trp1-RB 1..1197 102..1302 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:54:38 Download gff for AT13927.complete
Subject Subject Range Query Range Percent Splice Strand
Trp1-RB 1..1197 102..1302 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:02:01 Download gff for AT13927.complete
Subject Subject Range Query Range Percent Splice Strand
Trp1-RC 1..1197 102..1298 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:30:57 Download gff for AT13927.complete
Subject Subject Range Query Range Percent Splice Strand
Trp1-RC 1..1197 102..1298 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-05 09:03:40 Download gff for AT13927.complete
Subject Subject Range Query Range Percent Splice Strand
Trp1-RB 23..1320 1..1302 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:54:37 Download gff for AT13927.complete
Subject Subject Range Query Range Percent Splice Strand
Trp1-RB 23..1320 1..1302 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:02:01 Download gff for AT13927.complete
Subject Subject Range Query Range Percent Splice Strand
Trp1-RC 29..1532 1..1504 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:30:57 Download gff for AT13927.complete
Subject Subject Range Query Range Percent Splice Strand
Trp1-RC 29..1532 1..1504 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:45:34 Download gff for AT13927.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10010382..10010557 1..176 100 -> Plus
2L 10010737..10011552 177..992 100 -> Plus
2L 10011607..10012118 993..1504 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:45:34 Download gff for AT13927.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10010382..10010557 1..176 100 -> Plus
2L 10010737..10011552 177..992 100 -> Plus
2L 10011607..10012118 993..1504 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:45:34 Download gff for AT13927.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10010382..10010557 1..176 100 -> Plus
2L 10010737..10011552 177..992 100 -> Plus
2L 10011607..10012118 993..1504 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:02:01 Download gff for AT13927.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10010737..10011552 177..992 100 -> Plus
arm_2L 10010382..10010557 1..176 100 -> Plus
arm_2L 10011607..10012118 993..1504 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:46:19 Download gff for AT13927.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10010737..10011552 177..992 100 -> Plus
2L 10011607..10012118 993..1504 99   Plus
2L 10010382..10010557 1..176 100 -> Plus

AT13927.pep Sequence

Translation from 101 to 1297

> AT13927.pep
MSGEEEYFQEEEEEEQEQDIYDDGTEYTEPGAQKVDKPSKDEKNVAKWLK
KNVKTKKTKFLSHIVEYFTSSKAIDALLKSKFTEGSNPLFTTREQVIEFL
DVMLEHKFFHRAKKVPVTLEEIRGKSGGDKKADKEKTQDKEKDKAKDEKK
DTDPEGDNGQGDGGASGNEKEKEKKEKKKRKIRLDMHPEQIFVDGSEAYV
WIYDPIPLHYWIFGFILLLGAVGICLFPLWPPLLRKGVYYLSIAAAGFLV
FILALTIVRLIVFIIVWALTGGKLHFWIFPNLTEDVSFFASFWPLYESNY
NSDPNNSSAKTDKKSKSKDKKKEKESDAEDTAVDADGDADGDVDAEVSTL
EPEKIELIKEHDTDMEIRKRRKVGADDYEEDDVDEEETKAQPKDSKAG*

AT13927.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:30:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15737-PA 422 GF15737-PA 18..392 22..398 1352 84.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:30:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10077-PA 423 GG10077-PA 13..393 26..398 1392 92.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:30:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11069-PA 453 GH11069-PA 24..423 21..398 1184 71.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:09:13
Subject Length Description Subject Range Query Range Score Percent Strand
Trp1-PC 398 CG4758-PC 1..398 1..398 2088 100 Plus
Trp1-PB 428 CG4758-PB 1..398 1..398 2088 100 Plus
Trp1-PD 385 CG4758-PD 13..385 26..398 1955 100 Plus
Trp1-PA 415 CG4758-PA 13..385 26..398 1955 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:30:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17586-PA 427 GI17586-PA 13..397 26..398 1210 72.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:30:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18954-PA 413 GL18954-PA 1..383 1..398 1350 80.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:30:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18410-PA 413 GA18410-PA 1..383 1..398 1350 80.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:30:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17862-PA 409 GM17862-PA 17..379 19..398 1337 89.3 Plus
Dsec\GM18782-PA 268 GM18782-PA 1..268 1..268 1323 95.2 Plus
Dsec\GM11063-PA 326 GM11063-PA 2..296 106..398 1066 92.2 Plus
Dsec\GM11065-PA 256 GM11065-PA 2..256 106..398 787 79 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:30:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23649-PA 447 GD23649-PA 36..417 19..398 1464 93.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:30:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17928-PA 438 GJ17928-PA 13..408 26..398 1188 73.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:30:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12718-PA 427 GK12718-PA 13..397 26..398 1291 73.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18890-PA 417 GE18890-PA 13..387 26..398 1870 95.7 Plus

AT13927.hyp Sequence

Translation from 101 to 1297

> AT13927.hyp
MSGEEEYFQEEEEEEQEQDIYDDGTEYTEPGAQKVDKPSKDEKNVAKWLK
KNVKTKKTKFLSHIVEYFTSSKAIDALLKSKFTEGSNPLFTTREQVIEFL
DVMLEHKFFHRAKKVPVTLEEIRGKSGGDKKADKEKTQDKEKDKAKDEKK
DTDPEGDNGQGDGGASGNEKEKEKKEKKKRKIRLDMHPEQIFVDGSEAYV
WIYDPIPLHYWIFGFILLLGAVGICLFPLWPPLLRKGVYYLSIAAAGFLV
FILALTIVRLIVFIIVWALTGGKLHFWIFPNLTEDVSFFASFWPLYESNY
NSDPNNSSAKTDKKSKSKDKKKEKESDAEDTAVDADGDADGDVDAEVSTL
EPEKIELIKEHDTDMEIRKRRKVGADDYEEDDVDEEETKAQPKDSKAG*

AT13927.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:10:28
Subject Length Description Subject Range Query Range Score Percent Strand
Trp1-PC 398 CG4758-PC 1..398 1..398 2088 100 Plus
Trp1-PB 428 CG4758-PB 1..398 1..398 2088 100 Plus
Trp1-PD 385 CG4758-PD 13..385 26..398 1955 100 Plus
Trp1-PA 415 CG4758-PA 13..385 26..398 1955 100 Plus