Clone AT13969 Report

Search the DGRC for AT13969

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:139
Well:69
Vector:pOTB7
Associated Gene/TranscriptCG9376-RA
Protein status:AT13969.pep: gold
Preliminary Size:630
Sequenced Size:970

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9376 2002-01-01 Sim4 clustering to Release 2
CG9376 2002-06-10 Blastp of sequenced clone
CG9376 2003-01-01 Sim4 clustering to Release 3
CG9376 2008-04-29 Release 5.5 accounting
CG9376 2008-08-15 Release 5.9 accounting
CG9376 2008-12-18 5.12 accounting

Clone Sequence Records

AT13969.complete Sequence

970 bp (970 high quality bases) assembled on 2002-06-10

GenBank Submission: AY070790

> AT13969.complete
CTGCATTTAATCATGGTTTCCCGATTCGACCAACAAAAGACCAAGCACCA
GCTCTTCCACGTGTCCCTCAGCCTCGCCACCATCCTGATCTGCATGGCGT
ACATGCAGTATCGCCGGAATTGGGCACATCTCGGCAGCTTCTGGGATTCT
CTTGTCGTCCCTATTGTTTTCCTCGGAGAGCTGCTAAAAGTTGTTTTGGC
TCGCTTCTACGGGAAGGTTGAGGATGGCGTCCTAACCGCCAAACAGCGCC
AGAAAAAGAACTCGTACTTTACGCCGCGGGAGCTCCTCGGAGGATTCACC
CTGCAGTTCCTGTGTACACTCCTCTACGCCTTTATCTGCATAATTTTGGG
AGCCCCGGTGCTGGGCAACTATGAGCAGACCTTCGTCTTGGCCTTACTGA
TGACCTTGTTGACGGTGTCACCCACGGTTTTCCTCCTCGGTGGCGGAGGA
GCACTACAAGTGTGCTTCTGCGAGAAACCGGACTTTGTGACCAAGTGCGA
GGACACGGCTCTGAATCTGTTCAAGTACAATGCACTGGGCGGTATTCTGG
GAGCTTGGGCCGGGAGCGTGGTCGCTCCACTAGACTGGGGACGTGACTGG
CAGGCTTATCCCATTCCCAACGTGATCGGAGCACTGCTGGGAAGCGCTCT
GGGCAATATATACGCTTGTACGCATGTCCTCTACGCCACAGCTCGAGTTT
ACATGACCAAGAAACGCACTTAAATCTAATAATAAAACTCTTCATTCTGC
CACCAAGATTATTACGTTGCGCTGCCACTGAAATCCACTCATCCACTAAG
AACCACGTCATCATCCCGTCTAGTCAGCAGCTTAGGAACTACCAAAAAGC
AATTACCACTTTAATGTTACATGTTTAATCATATTACTAGCGTGTATTAT
TAATGAATTCTTTTTAAATCAATCAATAATAAACTAACAAATTATGAATT
TAAAAAAAAAAAAAAAAAAA

AT13969.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:49:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG9376-RA 1030 CG9376-RA 80..1030 1..951 4740 99.8 Plus
l(3)76BDm-RA 4447 l(3)76BDm-RA 4382..4447 953..888 315 98.4 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:00:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 19601920..19602870 1..951 4755 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:48:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:00:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19612539..19613491 1..953 4750 99.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 19605639..19606591 1..953 4750 99.8 Plus
Blast to na_te.dros performed 2019-03-16 00:00:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Tv1 6868 Dvir\Tv1 6868bp Derived from AF056940 (Rel. 62, Last updated, Version 4). 4697..4751 898..951 128 72.7 Plus
gypsy12 10218 gypsy12 GYPSY12 10218bp 1062..1106 872..916 117 73.3 Plus
gypsy12 10218 gypsy12 GYPSY12 10218bp 8944..8988 872..916 117 73.3 Plus

AT13969.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:00:59 Download gff for AT13969.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 19601920..19602870 1..951 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:05:12 Download gff for AT13969.complete
Subject Subject Range Query Range Percent Splice Strand
CG9376-RA 1..711 13..723 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:25:21 Download gff for AT13969.complete
Subject Subject Range Query Range Percent Splice Strand
CG9376-RA 1..711 13..723 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:54:29 Download gff for AT13969.complete
Subject Subject Range Query Range Percent Splice Strand
CG9376-RA 1..711 13..723 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:15:51 Download gff for AT13969.complete
Subject Subject Range Query Range Percent Splice Strand
CG9376-RA 1..711 13..723 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:54:29 Download gff for AT13969.complete
Subject Subject Range Query Range Percent Splice Strand
CG9376-RA 1..711 13..723 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:53:08 Download gff for AT13969.complete
Subject Subject Range Query Range Percent Splice Strand
CG9376-RA 1..951 1..951 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:25:20 Download gff for AT13969.complete
Subject Subject Range Query Range Percent Splice Strand
CG9376-RA 80..1030 1..951 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:54:29 Download gff for AT13969.complete
Subject Subject Range Query Range Percent Splice Strand
CG9376-RA 85..1035 1..951 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:15:51 Download gff for AT13969.complete
Subject Subject Range Query Range Percent Splice Strand
CG9376-RA 1..951 1..951 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:54:29 Download gff for AT13969.complete
Subject Subject Range Query Range Percent Splice Strand
CG9376-RA 85..1035 1..951 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:00:59 Download gff for AT13969.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19612539..19613489 1..951 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:00:59 Download gff for AT13969.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19612539..19613489 1..951 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:00:59 Download gff for AT13969.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19612539..19613489 1..951 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:54:29 Download gff for AT13969.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19605639..19606589 1..951 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:49:04 Download gff for AT13969.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19605639..19606589 1..951 99   Plus

AT13969.hyp Sequence

Translation from 1 to 722

> AT13969.hyp
LHLIMVSRFDQQKTKHQLFHVSLSLATILICMAYMQYRRNWAHLGSFWDS
LVVPIVFLGELLKVVLARFYGKVEDGVLTAKQRQKKNSYFTPRELLGGFT
LQFLCTLLYAFICIILGAPVLGNYEQTFVLALLMTLLTVSPTVFLLGGGG
ALQVCFCEKPDFVTKCEDTALNLFKYNALGGILGAWAGSVVAPLDWGRDW
QAYPIPNVIGALLGSALGNIYACTHVLYATARVYMTKKRT*

AT13969.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:10:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG9376-PA 236 CG9376-PA 1..236 5..240 1241 100 Plus

AT13969.pep Sequence

Translation from 12 to 722

> AT13969.pep
MVSRFDQQKTKHQLFHVSLSLATILICMAYMQYRRNWAHLGSFWDSLVVP
IVFLGELLKVVLARFYGKVEDGVLTAKQRQKKNSYFTPRELLGGFTLQFL
CTLLYAFICIILGAPVLGNYEQTFVLALLMTLLTVSPTVFLLGGGGALQV
CFCEKPDFVTKCEDTALNLFKYNALGGILGAWAGSVVAPLDWGRDWQAYP
IPNVIGALLGSALGNIYACTHVLYATARVYMTKKRT*

AT13969.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:53:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23712-PA 236 GF23712-PA 1..236 1..236 1213 95.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:53:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16049-PA 236 GG16049-PA 1..236 1..236 1246 99.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16941-PA 236 GH16941-PA 1..235 1..235 1176 92.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:11:27
Subject Length Description Subject Range Query Range Score Percent Strand
PIG-F-PA 236 CG9376-PA 1..236 1..236 1241 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11801-PA 236 GI11801-PA 1..235 1..235 1180 92.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:53:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20948-PA 236 GL20948-PA 1..235 1..235 1170 91.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:53:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21741-PA 236 GA21741-PA 1..235 1..235 1173 92.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:53:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19613-PA 236 GM19613-PA 1..236 1..236 1248 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:53:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14818-PA 236 GD14818-PA 1..236 1..236 1248 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:53:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13505-PA 236 GJ13505-PA 1..235 1..235 1177 92.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:53:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19359-PA 237 GK19359-PA 2..236 1..235 1174 91.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:53:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19615-PA 236 GE19615-PA 1..236 1..236 1241 98.7 Plus