Clone AT14039 Report

Search the DGRC for AT14039

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:140
Well:39
Vector:pOTB7
Associated Gene/TranscriptCG12229-RA
Protein status:AT14039.pep: gold
Preliminary Size:1871
Sequenced Size:1991

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12229 2002-01-01 Sim4 clustering to Release 2
CG12229 2002-01-11 Blastp of sequenced clone
CG12229 2003-01-01 Sim4 clustering to Release 3
CG12229 2008-04-29 Release 5.5 accounting
CG12229 2008-08-15 Release 5.9 accounting
CG12229 2008-12-18 5.12 accounting

Clone Sequence Records

AT14039.complete Sequence

1991 bp (1991 high quality bases) assembled on 2002-01-11

GenBank Submission: AY075203

> AT14039.complete
CCTCGTGCCGATACTTTCGGTCGATTTCGATTAGTTTTCATACATTCGTA
AAGTTTGTACTTACACTCTTTGTTTTCATTCCCATTGTTCGTTTTCTTGG
ATCTAAGCTTCTTCTTGGCTGAAAATCAGACAAGATTGACACAGATTGCA
TTACAAATTGTGCTAAAGTATACATAAATTAACTGCACGCCAGGATGCCG
ATCAACCAGAAAGAAGTAACGCCGCAACTAGACAGTCAGACAGGTGAGGA
TCAGGGGGAGGAGGAGGAGCAGCCGGAAGACGAGAATCGTCTGGAGAAGT
TTACGGTGCGTCTTAATGGACAACATGACCTGGAGCAGCGTTTAAAGGAT
TTCAAAGCGGCATGCGAGGCTCACGAGAAGCACGCCAGACGGCGAAAACG
GAAGAGATACTATCATTTGGGTCTTGTGGCCAAGCTGGTGACGGAAACCA
CTCACGACGAGCTGCGACGTATGCTGGAAAATGGAACCTACACCTTTCAC
GTGGATACGGTGGGCAACAAGCCCGATGAACTGAAAGCCATTTTGGACAC
CATGAACATTGCGATATCGGCGCATTCTGCAGAGAGGGAACTACGTCTGA
CAACTGGCTTGGCTCTGGAGATTAACGGCGAGTGCTGTCGCGTTGGGAGA
CTGAGGAACAACTGCACCGTGATGCTGGCACGAGGTGGGGTGGTCACACT
CACCACGGATGAGTCCTACCGCTACAAAGGCTTTAAAGAAATAGTGTACG
TAATCAATCTGCGGTGTTATCTCGCCTCCGTTCAGTTGGGCGATATTGTG
ATGATCGGACGTGAAGTTAGAGGTAAGGTGGTGAAGACCCTGCGGGAAGC
ACTAACCGTGATGATCATAGATGCCGGTCTGGTAGCCTCCTACGACTTTA
TAGAGCTTCCTAGACAGTGCCACGCTCTCGATCCGGACCTATATCCCGAT
CTGTACATGAAGGACCTTGAGATGGCCGCGTCTTTGAATGCCAACTATGT
GGTTCTGCCCAAGATACGATGCAAGAGCTTTCTTCGTGCCGTGCGGCAGA
CCTTGAACTCGGACTTCAACCTTAAGTTGATCGGAATGATAGATTTCGAG
TATGTGCGAAGCAACATGCTTGATTTGCTAGGCATCATAAAGCTTGTGGA
CTACATTTGGATACCCGACATGTTCAACGTAAACTGTTGCGTATATAACT
ACATTATGGAGGACGTGCTTCCGATTTCGCAGTGCCAGAAGAAGCCAGTA
ATTGGCACTGTTCCGCTGGAGCGTTGCAGTGATTTTAAGCGATTTGAGTT
GCACGATTTCCTGTGGAAGGTCGACGCTATTCACATCCAAAAAAGTCCAT
GGTGCAACAAATATCCGCTGATAGTCAAAAAGCTGATGCCCATAAAAGAT
TATCGTGTTGGCGCGGTCCAGAATAAGATGGTACTGAAGAGCATCCTAAC
CTCATACCAGACCATTGTGAATTTTATTATCCGCACAATTAGCTCGATTG
AGTGTCAAGCCATATTTTTGTTCACCACTTGCGAGACCGCCAGCGTGGCC
CTTTCGCGCATTGAGATCTATTGCCCAGTATATGTTATGGTGCCGCTGGA
GGAGACAGATGATGCGGAAACCATTACCTGCAAGGTGGAGCTCGCTCGTG
CGCTTCATTTGCGCCGTAACATGCACCCGGTTCTTTACACCAAGGATCTC
AACGAGTGCAGCTACAGTCCGATTGAGTTTGGAGTGGACTTTATGAGGAA
GAAGGGCTGCTTGGAGGTTGGAGACTTTGTAGTTACCCTGGAGGTGGGCA
AAGAGGATAAGGATAACGTGGTCATCGGCATAGGAGAGGATGTTTGCATC
CTGCGGGCATTTTACGTGTCGCCACTCTTTGCCTGCGAGAAGTTTAAGTA
CGGTGGATAACTTTACGGCGTGCAGTTGTGCAGATTACACAGATAATAAA
CTCTAAATTAAATGTATCTTAAAAAAAAAAAAAAAAAAAAA

AT14039.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:30:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG12229-RA 1960 CG12229-RA 1..1960 11..1970 9695 99.6 Plus
CG12229.a 1912 CG12229.a 811..1912 869..1970 5420 99.4 Plus
CG12229.a 1912 CG12229.a 1..812 11..822 4045 99.8 Plus
CG32176.a 1957 CG32176.a 420..473 118..65 270 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:39:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 17423952..17425911 1970..11 9755 99.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:48:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:39:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17434471..17436431 1971..11 9700 99.6 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:58:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 17427571..17429531 1971..11 9700 99.6 Minus
Blast to na_te.dros performed on 2019-03-15 17:39:10 has no hits.

AT14039.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:40:20 Download gff for AT14039.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 17423952..17425911 11..1970 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:05:16 Download gff for AT14039.complete
Subject Subject Range Query Range Percent Splice Strand
CG12229-RA 1..1716 195..1910 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:49:18 Download gff for AT14039.complete
Subject Subject Range Query Range Percent Splice Strand
CG12229-RA 1..1716 195..1910 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:42:11 Download gff for AT14039.complete
Subject Subject Range Query Range Percent Splice Strand
CG12229-RA 1..1716 195..1910 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:16:23 Download gff for AT14039.complete
Subject Subject Range Query Range Percent Splice Strand
CG12229-RA 1..1716 195..1910 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:43:07 Download gff for AT14039.complete
Subject Subject Range Query Range Percent Splice Strand
CG12229-RA 1..1716 195..1910 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:13:14 Download gff for AT14039.complete
Subject Subject Range Query Range Percent Splice Strand
CG12229-RA 1..1960 11..1970 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:49:18 Download gff for AT14039.complete
Subject Subject Range Query Range Percent Splice Strand
CG12229-RA 1..1960 11..1970 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:42:11 Download gff for AT14039.complete
Subject Subject Range Query Range Percent Splice Strand
CG12229-RA 1..1960 11..1970 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:16:24 Download gff for AT14039.complete
Subject Subject Range Query Range Percent Splice Strand
CG12229-RA 1..1960 11..1970 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:43:07 Download gff for AT14039.complete
Subject Subject Range Query Range Percent Splice Strand
CG12229-RA 1..1960 11..1970 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:40:20 Download gff for AT14039.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17434472..17436431 11..1970 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:40:20 Download gff for AT14039.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17434472..17436431 11..1970 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:40:20 Download gff for AT14039.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17434472..17436431 11..1970 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:42:11 Download gff for AT14039.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17427572..17429531 11..1970 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:50:22 Download gff for AT14039.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17427572..17429531 11..1970 99   Minus

AT14039.pep Sequence

Translation from 194 to 1909

> AT14039.pep
MPINQKEVTPQLDSQTGEDQGEEEEQPEDENRLEKFTVRLNGQHDLEQRL
KDFKAACEAHEKHARRRKRKRYYHLGLVAKLVTETTHDELRRMLENGTYT
FHVDTVGNKPDELKAILDTMNIAISAHSAERELRLTTGLALEINGECCRV
GRLRNNCTVMLARGGVVTLTTDESYRYKGFKEIVYVINLRCYLASVQLGD
IVMIGREVRGKVVKTLREALTVMIIDAGLVASYDFIELPRQCHALDPDLY
PDLYMKDLEMAASLNANYVVLPKIRCKSFLRAVRQTLNSDFNLKLIGMID
FEYVRSNMLDLLGIIKLVDYIWIPDMFNVNCCVYNYIMEDVLPISQCQKK
PVIGTVPLERCSDFKRFELHDFLWKVDAIHIQKSPWCNKYPLIVKKLMPI
KDYRVGAVQNKMVLKSILTSYQTIVNFIIRTISSIECQAIFLFTTCETAS
VALSRIEIYCPVYVMVPLEETDDAETITCKVELARALHLRRNMHPVLYTK
DLNECSYSPIEFGVDFMRKKGCLEVGDFVVTLEVGKEDKDNVVIGIGEDV
CILRAFYVSPLFACEKFKYGG*

AT14039.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:43:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24306-PA 567 GF24306-PA 4..567 5..571 2544 84.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:43:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15809-PA 571 GG15809-PA 1..571 1..571 2999 97.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:43:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14905-PA 565 GH14905-PA 5..564 3..570 2327 75.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:29:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG12229-PA 571 CG12229-PA 1..571 1..571 2983 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:43:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12881-PA 566 GI12881-PA 4..565 8..570 2253 76.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:43:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15481-PA 458 GL15481-PA 7..324 12..331 1171 71.6 Plus
Dper\GL15481-PA 458 GL15481-PA 297..457 410..570 720 81.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:43:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11492-PA 564 GA11492-PA 7..563 12..570 2432 80.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:44:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24330-PA 571 GM24330-PA 1..571 1..571 3034 98.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:44:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12403-PA 571 GD12403-PA 1..571 1..571 3034 98.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:44:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13022-PA 566 GJ13022-PA 29..565 34..570 2314 78.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:44:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18050-PA 564 GK18050-PA 1..563 12..570 2360 76 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:44:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22147-PA 571 GE22147-PA 1..571 1..571 2990 96.7 Plus

AT14039.hyp Sequence

Translation from 194 to 1909

> AT14039.hyp
MPINQKEVTPQLDSQTGEDQGEEEEQPEDENRLEKFTVRLNGQHDLEQRL
KDFKAACEAHEKHARRRKRKRYYHLGLVAKLVTETTHDELRRMLENGTYT
FHVDTVGNKPDELKAILDTMNIAISAHSAERELRLTTGLALEINGECCRV
GRLRNNCTVMLARGGVVTLTTDESYRYKGFKEIVYVINLRCYLASVQLGD
IVMIGREVRGKVVKTLREALTVMIIDAGLVASYDFIELPRQCHALDPDLY
PDLYMKDLEMAASLNANYVVLPKIRCKSFLRAVRQTLNSDFNLKLIGMID
FEYVRSNMLDLLGIIKLVDYIWIPDMFNVNCCVYNYIMEDVLPISQCQKK
PVIGTVPLERCSDFKRFELHDFLWKVDAIHIQKSPWCNKYPLIVKKLMPI
KDYRVGAVQNKMVLKSILTSYQTIVNFIIRTISSIECQAIFLFTTCETAS
VALSRIEIYCPVYVMVPLEETDDAETITCKVELARALHLRRNMHPVLYTK
DLNECSYSPIEFGVDFMRKKGCLEVGDFVVTLEVGKEDKDNVVIGIGEDV
CILRAFYVSPLFACEKFKYGG*

AT14039.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:10:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG12229-PA 571 CG12229-PA 1..571 1..571 2983 100 Plus