Clone AT14262 Report

Search the DGRC for AT14262

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:142
Well:62
Vector:pOTB7
Associated Gene/TranscriptHtrA2-RA
Protein status:AT14262.pep: gold
Preliminary Size:1555
Sequenced Size:1438

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8464 2002-01-01 Sim4 clustering to Release 2
CG8464 2002-01-11 Blastp of sequenced clone
CG8464 2003-01-01 Sim4 clustering to Release 3
HtrA2 2008-04-29 Release 5.5 accounting
HtrA2 2008-08-15 Release 5.9 accounting
HtrA2 2008-12-18 5.12 accounting

Clone Sequence Records

AT14262.complete Sequence

1438 bp (1438 high quality bases) assembled on 2002-01-11

GenBank Submission: AY075206

> AT14262.complete
TGAGAAGTGATAAATTAAATAACAATAACAAACGCCGTGTAATCACATAA
ACCCATGGCTTTGCGCGGTTCCCACCGCTTGGAAGTGATCTTCAAACGCT
GCATTGCCTCCCCGGTGTTACACAGTCATGCAGCCAATCGGAGGAGCAGT
CAACTAGCGATCAAAGAAGGCGATCCAAACAGCAATGGTAACAGTGGGCA
ATATCAGCAAAATGGTGAACAAAAAGAAAAAGGCTGGAGACGATTGGTTC
GATTCTTTGTGCCCTTCTCCCTGGGCGCTGTGGTCAGTGCGGCGATCATC
CAGCGGGAAGACTTAACGCCAACGATCGCCGCTTCCAAAATGACCGGTCG
TCGGCGGGACTTCAACTTTATAGCTGATGTGGTGGCAGGTTGTGCGGATT
CGGTGGTCTACATTGAGATTAAGGACACCCGCCACTTTGACTACTTCAGC
GGCCAACCGATTACGGCATCGAATGGTTCCGGCTTCATTATTGAGCAGAA
CGGTCTCATCCTTACCAACGCCCATGTGGTGATCAACAAACCACACACAA
TGGTACAGGTGAGGCTATCCGATGGCAGGACTTTTCCCGCCACCATCGAG
GACGTGGATCAGACATCCGATCTGGCGACTTTGCGCATACAGGTGAACAA
TCTTTCGGTGATGCGGCTAGGCAAGAGCAGTACCCTGCGATCCGGCGAGT
GGGTTGTGGCCTTAGGCAGTCCGCTGGCCCTAAGCAATACGGTGACAGCA
GGCGTAATCAGTTCAACGCAGCGTGCATCTCAAGAACTTGGCCTTCGAAA
CAGGGATATCAACTACCTGCAAACGGATGCTGCGATTACGTTTGGCAACT
CCGGCGGTCCCTTGGTCAATCTGGATGGCGAGGCTATTGGAGTTAACTCG
ATGAAGGTGACGGCTGGCATTAGCTTCGCAATACCCATTGACTATGTAAA
GGTGTTTCTGGAGCGGGCGGCCGAGAAACGAAAGAAGGGCTCGGCCTACA
AGACTGGCTATCCGGTGAAGCGGTACATGGGCATCACCATGCTGACGCTC
ACACCGGATATTCTGTTCGAGCTCAAGTCACGAAGCCAAAACATGCCCAG
CAACTTAACGCACGGCGTGCTCGTGTGGAAGGTTATCGTTGGGTCACCGG
CGCACAGTGGTGGACTCCAACCCGGAGACATAGTGACCCACATAAACAAG
AAGGAGATCAAGAACTCATCGGATGTCTACGATGCCCTGGCGGATAATAG
TAAAACTCTAGATATAGTGATCCTGCGAGGTGTGAAGCAGATGCACGTGA
CCATTACGCCAGAAGATCCCTAGTTTAACCTGTATGCAGCACCTGTACCC
AATTGTATATATTTATATATCTAAACAAAACCTACCGATCCTGGGAAGAA
ATCGCTGACAAACCCAAAAAAAAAAAAAAAAAAAAAAA

AT14262.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:30:22
Subject Length Description Subject Range Query Range Score Percent Strand
HtrA2.d 3332 HtrA2.d 253..1668 1..1416 7065 99.9 Plus
HtrA2.b 2604 HtrA2.b 253..1668 1..1416 7065 99.9 Plus
HtrA2.c 2600 HtrA2.c 253..1668 1..1416 7065 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:40:58
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 10335573..10336216 644..1 3205 99.8 Minus
chr3R 27901430 chr3R 10334992..10335511 1157..638 2600 100 Minus
chr3R 27901430 chr3R 10334650..10334909 1415..1156 1300 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:49:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:40:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14510817..14511460 644..1 3205 99.8 Minus
3R 32079331 3R 14510236..14510755 1157..638 2600 100 Minus
3R 32079331 3R 14509893..14510153 1416..1156 1305 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:58:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 14251648..14252291 644..1 3205 99.8 Minus
3R 31820162 3R 14251067..14251586 1157..638 2600 100 Minus
3R 31820162 3R 14250724..14250984 1416..1156 1305 100 Minus
Blast to na_te.dros performed 2019-03-16 08:40:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Tv1 6868 Dvir\Tv1 6868bp Derived from AF056940 (Rel. 62, Last updated, Version 4). 1458..1517 167..223 122 70 Plus

AT14262.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:41:57 Download gff for AT14262.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 10334650..10334907 1158..1415 100 <- Minus
chr3R 10334992..10335506 643..1157 100 <- Minus
chr3R 10335575..10336216 1..642 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:05:41 Download gff for AT14262.complete
Subject Subject Range Query Range Percent Splice Strand
HtrA2-RA 1..1269 55..1323 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:49:05 Download gff for AT14262.complete
Subject Subject Range Query Range Percent Splice Strand
HtrA2-RA 1..1269 55..1323 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:53:06 Download gff for AT14262.complete
Subject Subject Range Query Range Percent Splice Strand
HtrA2-RA 1..1269 55..1323 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:16:15 Download gff for AT14262.complete
Subject Subject Range Query Range Percent Splice Strand
HtrA2-RA 1..1269 55..1323 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:46:02 Download gff for AT14262.complete
Subject Subject Range Query Range Percent Splice Strand
HtrA2-RA 1..1269 55..1323 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:13:02 Download gff for AT14262.complete
Subject Subject Range Query Range Percent Splice Strand
HtrA2-RA 233..1647 1..1415 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:49:05 Download gff for AT14262.complete
Subject Subject Range Query Range Percent Splice Strand
HtrA2-RA 233..1647 1..1415 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:53:06 Download gff for AT14262.complete
Subject Subject Range Query Range Percent Splice Strand
HtrA2-RA 1..1415 1..1415 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:16:16 Download gff for AT14262.complete
Subject Subject Range Query Range Percent Splice Strand
HtrA2-RA 233..1647 1..1415 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:46:02 Download gff for AT14262.complete
Subject Subject Range Query Range Percent Splice Strand
HtrA2-RA 1..1415 1..1415 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:41:57 Download gff for AT14262.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14509894..14510151 1158..1415 100 <- Minus
3R 14510236..14510750 643..1157 100 <- Minus
3R 14510819..14511460 1..642 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:41:57 Download gff for AT14262.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14509894..14510151 1158..1415 100 <- Minus
3R 14510236..14510750 643..1157 100 <- Minus
3R 14510819..14511460 1..642 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:41:57 Download gff for AT14262.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14509894..14510151 1158..1415 100 <- Minus
3R 14510236..14510750 643..1157 100 <- Minus
3R 14510819..14511460 1..642 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:53:06 Download gff for AT14262.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10335616..10335873 1158..1415 100 <- Minus
arm_3R 10335958..10336472 643..1157 100 <- Minus
arm_3R 10336541..10337182 1..642 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:50:12 Download gff for AT14262.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14250725..14250982 1158..1415 100 <- Minus
3R 14251067..14251581 643..1157 100 <- Minus
3R 14251650..14252291 1..642 99   Minus

AT14262.hyp Sequence

Translation from 54 to 1322

> AT14262.hyp
MALRGSHRLEVIFKRCIASPVLHSHAANRRSSQLAIKEGDPNSNGNSGQY
QQNGEQKEKGWRRLVRFFVPFSLGAVVSAAIIQREDLTPTIAASKMTGRR
RDFNFIADVVAGCADSVVYIEIKDTRHFDYFSGQPITASNGSGFIIEQNG
LILTNAHVVINKPHTMVQVRLSDGRTFPATIEDVDQTSDLATLRIQVNNL
SVMRLGKSSTLRSGEWVVALGSPLALSNTVTAGVISSTQRASQELGLRNR
DINYLQTDAAITFGNSGGPLVNLDGEAIGVNSMKVTAGISFAIPIDYVKV
FLERAAEKRKKGSAYKTGYPVKRYMGITMLTLTPDILFELKSRSQNMPSN
LTHGVLVWKVIVGSPAHSGGLQPGDIVTHINKKEIKNSSDVYDALADNSK
TLDIVILRGVKQMHVTITPEDP*

AT14262.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:11:26
Subject Length Description Subject Range Query Range Score Percent Strand
HtrA2-PB 422 CG8464-PB 1..422 1..422 2140 100 Plus
HtrA2-PA 422 CG8464-PA 1..422 1..422 2140 100 Plus

AT14262.pep Sequence

Translation from 54 to 1322

> AT14262.pep
MALRGSHRLEVIFKRCIASPVLHSHAANRRSSQLAIKEGDPNSNGNSGQY
QQNGEQKEKGWRRLVRFFVPFSLGAVVSAAIIQREDLTPTIAASKMTGRR
RDFNFIADVVAGCADSVVYIEIKDTRHFDYFSGQPITASNGSGFIIEQNG
LILTNAHVVINKPHTMVQVRLSDGRTFPATIEDVDQTSDLATLRIQVNNL
SVMRLGKSSTLRSGEWVVALGSPLALSNTVTAGVISSTQRASQELGLRNR
DINYLQTDAAITFGNSGGPLVNLDGEAIGVNSMKVTAGISFAIPIDYVKV
FLERAAEKRKKGSAYKTGYPVKRYMGITMLTLTPDILFELKSRSQNMPSN
LTHGVLVWKVIVGSPAHSGGLQPGDIVTHINKKEIKNSSDVYDALADNSK
TLDIVILRGVKQMHVTITPEDP*

AT14262.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:42:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17480-PA 426 GF17480-PA 1..426 1..422 1938 86.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:42:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21285-PA 422 GG21285-PA 1..422 1..422 2149 96 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:42:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13631-PA 426 GH13631-PA 1..426 1..422 1752 79.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:57
Subject Length Description Subject Range Query Range Score Percent Strand
HtrA2-PB 422 CG8464-PB 1..422 1..422 2140 100 Plus
HtrA2-PA 422 CG8464-PA 1..422 1..422 2140 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:42:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24802-PA 430 GI24802-PA 1..430 1..422 1796 78.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:42:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24014-PA 427 GL24014-PA 1..427 1..422 1791 80.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:42:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21097-PA 427 GA21097-PA 1..427 1..422 1793 81.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:42:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25850-PA 422 GM25850-PA 1..422 1..422 2208 98.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:42:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20417-PA 422 GD20417-PA 1..422 1..422 2192 97.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:42:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24448-PA 421 GJ24448-PA 1..421 1..422 1802 82.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:42:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12147-PA 434 GK12147-PA 1..434 1..422 1784 79 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:42:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26447-PA 422 GE26447-PA 1..422 1..422 2179 97.2 Plus