Clone AT14346 Report

Search the DGRC for AT14346

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:143
Well:46
Vector:pOTB7
Associated Gene/TranscriptCG15510-RB
Protein status:AT14346.pep: gold
Preliminary Size:561
Sequenced Size:1070

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15510 2002-01-01 Sim4 clustering to Release 2
CG15510 2002-04-26 Blastp of sequenced clone
CG15510 2003-01-01 Sim4 clustering to Release 3
CG15510 2008-04-29 Release 5.5 accounting
CG15510 2008-08-15 Release 5.9 accounting
CG15510 2008-12-18 5.12 accounting

Clone Sequence Records

AT14346.complete Sequence

1070 bp (1070 high quality bases) assembled on 2002-04-26

GenBank Submission: AY113253

> AT14346.complete
AGATGGTGGGTCACACTTTCCAAGGCGCACCACACCACGGATGTGGAGAA
CTCGATGATAATCAGGGATCCGACCGTCTCCCCAAGAACCTGAATGATGT
ACGGCACGTGCGTGTAACCTTTCGGACACATCCTTACATCGGCGACCAGA
AGAAGGATGGCAAACGTGAAGATCCAAGCGCCCACTTTCGGAGCAGGTGA
ACAGGTATCTTTAGGTGGCCAAGGGCTTACCGATATTCCGAGCACGAGGC
ATGCGAATATCATTTCAGTCAAAATTCGTTTTCGGGTGAAAACAGTAACT
GGAGCATTTTGGGAAATTCAAAGTCTACACAAAATTCAAAGAATGGGGCG
AAAAAGGGGTCGAAAGGAGTATTGTCCCCCCATTTACAAGCGCCAGAAAG
TGGCGCGCGTCACTAACAATGGATACCTCAACTTTATGACCGAGTACAAG
AAACGCTTTTACGGACTTTCTCCGCAGGACATGGTGCATTATGCGGCTAA
GCAGTGGACCCAGCTGTCCATGGCTGAGAAGGAAGCTTTCAAGAGCAAGA
AACCATCGACGATTACTTTGAAGAGTCCAGCACAGTACGTGGCCTGTGAG
ATGAAAAGCGATGTCGCCGGAGGACAGCAAAGTTCTTGCCAAAGACAGTC
TCCAAGCGCTCGGCTGAGGGAATCGGAGAGGAGATCGTCCAGATCGAAGA
CCTTGTGCAGATCAGCAAAGAATCGTCAGCGAGGGAAGCCGAAACCTCAG
CAAAGCAAGCGCAGGCTCAGTCACATGGGCTCGGCAGTGGCATATATCCA
CTTCCTGCGCAAGTTCCAAAGGAAGAATACTGAGTTGCGCACCATCGATC
TGCTGAAGACGGCAACTAGATTGTGGTGCCGGTTGCCCGAAAGGCATCGC
CATGCGTTTGAGAGGCCACTTTGGATTGTTACTATAGGAAAATCCTAGGC
TAGGAGTAAGCAGTATGATATGATATATTTTTTTATAGCTCTCAAGACTA
TAAGTCACTTTCACTTTTCTAGATTAAATTAAATCTCATGTTAGAGCAAT
CCAAAAAAAAAAAAAAAAAA

AT14346.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:11:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG15510-RB 1055 CG15510-RB 4..1055 4..1054 5160 99.5 Plus
CG15510.a 1055 CG15510.a 4..1055 4..1054 5160 99.5 Plus
CG15510.b 1031 CG15510.b 4..550 4..550 2690 99.4 Plus
CG15510.b 1031 CG15510.b 547..1031 571..1054 2370 99.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:41:14
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 25659411..25659788 547..924 1890 100 Plus
chr3R 27901430 chr3R 25659055..25659357 247..549 1470 99 Plus
chr3R 27901430 chr3R 25658478..25658723 4..249 1215 99.6 Plus
chr3R 27901430 chr3R 25659842..25659971 923..1052 650 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:49:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29836886..29837263 547..924 1890 100 Plus
3R 32079331 3R 29836530..29836832 247..549 1470 99 Plus
3R 32079331 3R 29835953..29836198 4..249 1230 100 Plus
3R 32079331 3R 29837317..29837449 923..1054 600 98.5 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:42:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 29577717..29578094 547..924 1890 100 Plus
3R 31820162 3R 29577361..29577663 247..549 1470 99 Plus
3R 31820162 3R 29576784..29577029 4..249 1230 100 Plus
3R 31820162 3R 29578148..29578280 923..1054 610 98.4 Plus
Blast to na_te.dros performed 2019-03-16 08:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
blood 7410 blood BLOOD 7410bp 1169..1237 837..905 138 66.7 Plus

AT14346.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:42:03 Download gff for AT14346.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 25658475..25658722 1..248 99 -> Plus
chr3R 25659057..25659357 249..549 99 -> Plus
chr3R 25659414..25659787 550..923 100 -> Plus
chr3R 25659843..25659971 924..1052 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:05:47 Download gff for AT14346.complete
Subject Subject Range Query Range Percent Splice Strand
CG15510-RA 1..792 157..948 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:56:41 Download gff for AT14346.complete
Subject Subject Range Query Range Percent Splice Strand
CG15510-RB 1..606 343..948 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:53:12 Download gff for AT14346.complete
Subject Subject Range Query Range Percent Splice Strand
CG15510-RB 1..606 343..948 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:50:02 Download gff for AT14346.complete
Subject Subject Range Query Range Percent Splice Strand
CG15510-RA 1..792 157..948 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:46:16 Download gff for AT14346.complete
Subject Subject Range Query Range Percent Splice Strand
CG15510-RB 1..606 343..948 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:36:18 Download gff for AT14346.complete
Subject Subject Range Query Range Percent Splice Strand
CG15510-RA 1..1053 1..1052 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:56:41 Download gff for AT14346.complete
Subject Subject Range Query Range Percent Splice Strand
CG15510-RB 1..1053 1..1052 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:53:12 Download gff for AT14346.complete
Subject Subject Range Query Range Percent Splice Strand
CG15510-RB 1..1053 1..1052 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:50:03 Download gff for AT14346.complete
Subject Subject Range Query Range Percent Splice Strand
CG15510-RA 1..1053 1..1052 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:46:16 Download gff for AT14346.complete
Subject Subject Range Query Range Percent Splice Strand
CG15510-RB 1..1053 1..1052 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:42:03 Download gff for AT14346.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29835950..29836197 1..248 99 -> Plus
3R 29836532..29836832 249..549 99 -> Plus
3R 29836889..29837262 550..923 100 -> Plus
3R 29837318..29837447 924..1052 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:42:03 Download gff for AT14346.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29835950..29836197 1..248 99 -> Plus
3R 29836532..29836832 249..549 99 -> Plus
3R 29836889..29837262 550..923 100 -> Plus
3R 29837318..29837447 924..1052 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:42:03 Download gff for AT14346.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29835950..29836197 1..248 99 -> Plus
3R 29836532..29836832 249..549 99 -> Plus
3R 29836889..29837262 550..923 100 -> Plus
3R 29837318..29837447 924..1052 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:53:12 Download gff for AT14346.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25661672..25661919 1..248 99 -> Plus
arm_3R 25662254..25662554 249..549 99 -> Plus
arm_3R 25662611..25662984 550..923 100 -> Plus
arm_3R 25663040..25663169 924..1052 98   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:21:54 Download gff for AT14346.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29576781..29577028 1..248 99 -> Plus
3R 29577363..29577663 249..549 99 -> Plus
3R 29577720..29578093 550..923 100 -> Plus
3R 29578149..29578278 924..1052 98   Plus

AT14346.pep Sequence

Translation from 156 to 947

> AT14346.pep
MANVKIQAPTFGAGEQVSLGGQGLTDIPSTRHANIISVKIRFRVKTVTGA
FWEIQSLHKIQRMGRKRGRKEYCPPIYKRQKVARVTNNGYLNFMTEYKKR
FYGLSPQDMVHYAAKQWTQLSMAEKEAFKSKKPSTITLKSPAQYVACEMK
SDVAGGQQSSCQRQSPSARLRESERRSSRSKTLCRSAKNRQRGKPKPQQS
KRRLSHMGSAVAYIHFLRKFQRKNTELRTIDLLKTATRLWCRLPERHRHA
FERPLWIVTIGKS*

AT14346.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:33:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18670-PA 129 GF18670-PA 29..82 77..130 183 57.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:33:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11700-PA 156 GG11700-PA 1..155 109..263 458 69.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:21:15
Subject Length Description Subject Range Query Range Score Percent Strand
Prtl99C-PD 201 CG15510-PD 1..201 63..263 1057 100 Plus
Prtl99C-PB 201 CG15510-PB 1..201 63..263 1057 100 Plus
Prtl99C-PC 193 CG15510-PC 1..193 63..263 999 96 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:33:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14516-PA 84 GL14516-PA 11..65 77..131 143 47.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:33:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12829-PA 200 GM12829-PA 1..200 63..263 891 82.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:33:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21472-PA 200 GD21472-PA 1..200 63..263 898 83.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:33:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14607-PA 224 GK14607-PA 31..212 85..262 150 28.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:33:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23890-PA 280 GE23890-PA 23..280 2..256 764 66.7 Plus

AT14346.hyp Sequence

Translation from 156 to 947

> AT14346.hyp
MANVKIQAPTFGAGEQVSLGGQGLTDIPSTRLANIVSVKIRFRVKTVTGA
FWEIQSLHKIQRMGRKRGRKEYCPPIYKRQKVARVTNNGYLNFMTEYKKR
FYGLSPQDMVHYAAKQWTQLSMAEKEAFKSKKPSTITLKSPAQYVACEMK
SDVAGGQQSSCQRQSPSARLRESERRSSRSKTLCRSAKNRQRGKPKPQQS
KRRLSHMGSAVAYIHFLRKFQRKNTELRTIDLLKTATRLWCRLPERHRHA
FERPLWIVTIGKS*

AT14346.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:11:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG15510-PD 201 CG15510-PD 1..201 63..263 1057 100 Plus
CG15510-PB 201 CG15510-PB 1..201 63..263 1057 100 Plus
CG15510-PC 193 CG15510-PC 1..193 63..263 999 96 Plus