Clone AT14373 Report

Search the DGRC for AT14373

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:143
Well:73
Vector:pOTB7
Associated Gene/TranscriptCLS-RA
Protein status:AT14373.pep: gold
Preliminary Size:1150
Sequenced Size:1455

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4774 2002-01-01 Sim4 clustering to Release 2
CG4774 2002-04-21 Blastp of sequenced clone
CG4774 2003-01-01 Sim4 clustering to Release 3
CG4774 2008-04-29 Release 5.5 accounting
CG4774 2008-08-15 Release 5.9 accounting
CG4774 2008-12-18 5.12 accounting

Clone Sequence Records

AT14373.complete Sequence

1455 bp (1455 high quality bases) assembled on 2002-04-21

GenBank Submission: AY113254

> AT14373.complete
GTTTTTTATCTCTCATTCCTATGACCTCAGTATTGCATATAATTTTATAA
ACATTTGAATAAAAGAAACGTCATTTCATTTTGCAATCACAATTGAATAG
TATACACTTTCTTATATAAGGTGCCATCAGTGAACAAGGATTTCCGACCA
ATGGTGCGTGTTTGAGCTGGTGATAACAGATGGCCAAGGGTCGGTGGTCG
ATCAATTTGGAACCAAGGTTACGAATCTCAATAAATTGAAACTGATTGGG
CATTTTGTGTGATTACAGTGCTCGCGAAAGAGTCTGGACTTGAGACAGGG
ATCGAACGTCAATTAACCTATGCTGCCCGCCATCATTTTCCGGCAGGTGC
AGCGCCCACTGCACCATGGAGCCGCCACATTGGAGCACGTTTTGGGAGTC
GGCGGAAGCAGCTTCGTGAACTGCCTGAATCGCTATGCGGCCGCCACGGG
ATTCATTCGGATCTCGTTTCTGGACATTAAGCGGCGCAGGAACTACGAGT
TAGCCAGACTTCGCCTCTATGCCGATGAGAAGAAGCAGTCGCTCCATTTG
CGCACCTTGCAGGGACGCCATCTCCTGCAGGGTGTCATCGAAAGGAAGAA
CTTCCTGGTGGATGACATCCGGGAGGCCAGGCACAAAGTCCAGGAGCGGG
TGCGCGAGAAGATCGACGAGATACGCGAAGAGCGAGAGAACATTATGACC
ATACCCAACATGCTGACCATCAGTCGTGCCGTCCTCTCACCCTACATCGG
ATATGTTATAGTCCAGGGCGATTTCACCCTGGGCATGAGCCTTCTAGCGT
TCGCCGGCATCACAGATCTGTTGGATGGACAGATCGCACGACGGTGGCCT
TCGCAGGCGAGCAAGTTCGGTTCCTTCCTGGACCCCATGGCTGATAAGTT
GCTGATGGGCTCGCTGGTCATCTCGCTGTGCTACACGGACCTGCTGCCCA
TGTGGCTCATGGGCATCGTGGTGTTCCGGGATGTCTTTCTTCTAGGAGCT
GGATTTGTTATACGCTACATAAGTCTGCCACCGCCGAAAACCTTTTCGCG
CTACTTCGACGCCACCCATGTTACTGCCCAACTGGAGCCCACGCTGCTCA
GCAAGATCAACACGGGCGTCCAGTTGGCCACCATTGGACTGAGCCTGGGA
GCTCCCATTTGGAACTATTTGGATCACCCAGCTTTGCAGGGACTTTGGTA
TCTGACTGGCCTGACTACGGCTGCCACTGCCCTCAGCTACGTCATGAATC
GGCATAATACCTTTAAGATTATCCAAAAAAAGACGTAGGGCCGGGCATTT
CCGCTAAATATCTGAGTACTATGAAGGAGTAGTATCTCTCCTTAAGCAAT
GATTAGTATGTACCATGTTTTCTAAATGATTAACATATTAAATTTAAAAA
AATCTATTTTGTTAATAAATTTTAAGTGTTTTTCCACAAAAAAAAAAAAA
AAAAA

AT14373.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:15:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG4774-RB 1439 CG4774-RB 1..1439 1..1439 7195 100 Plus
CG4774-RC 1408 CG4774-RC 207..1378 268..1439 5860 100 Plus
CG4774-RA 1397 CG4774-RA 196..1367 268..1439 5860 100 Plus
CG4774-RC 1408 CG4774-RC 137..207 119..189 355 100 Plus
CG4774-RA 1397 CG4774-RA 162..196 119..153 175 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:07:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 21509349..21510050 820..119 3510 100 Minus
chr3R 27901430 chr3R 21508270..21508535 1437..1172 1330 100 Minus
chr3R 27901430 chr3R 21508802..21509018 1036..820 1085 100 Minus
chr3R 27901430 chr3R 21508601..21508737 1172..1036 685 100 Minus
chr3R 27901430 chr3R 21510283..21510404 122..1 610 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:49:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:07:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25686315..25687016 820..119 3510 100 Minus
3R 32079331 3R 25685234..25685501 1439..1172 1340 100 Minus
3R 32079331 3R 25685768..25685984 1036..820 1085 100 Minus
3R 32079331 3R 25685567..25685703 1172..1036 685 100 Minus
3R 32079331 3R 25687249..25687370 122..1 610 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:45:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 25427146..25427847 820..119 3510 100 Minus
3R 31820162 3R 25426065..25426332 1439..1172 1340 100 Minus
3R 31820162 3R 25426599..25426815 1036..820 1085 100 Minus
3R 31820162 3R 25426398..25426534 1172..1036 685 100 Minus
3R 31820162 3R 25428080..25428201 122..1 610 100 Minus
Blast to na_te.dros performed on 2019-03-16 00:07:16 has no hits.

AT14373.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:08:08 Download gff for AT14373.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 21508601..21508736 1037..1172 100 <- Minus
chr3R 21508802..21509017 821..1036 100 <- Minus
chr3R 21509349..21510048 121..820 100 <- Minus
chr3R 21510285..21510404 1..120 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:05:51 Download gff for AT14373.complete
Subject Subject Range Query Range Percent Splice Strand
CG4774-RC 1..969 320..1288 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:01:28 Download gff for AT14373.complete
Subject Subject Range Query Range Percent Splice Strand
CG4774-RC 1..969 320..1288 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:55:05 Download gff for AT14373.complete
Subject Subject Range Query Range Percent Splice Strand
CLS-RA 1..969 320..1288 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:54:52 Download gff for AT14373.complete
Subject Subject Range Query Range Percent Splice Strand
CG4774-RC 1..969 320..1288 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:58:29 Download gff for AT14373.complete
Subject Subject Range Query Range Percent Splice Strand
CLS-RA 1..969 320..1288 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:42:53 Download gff for AT14373.complete
Subject Subject Range Query Range Percent Splice Strand
CG4774-RB 1..1437 1..1437 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:01:28 Download gff for AT14373.complete
Subject Subject Range Query Range Percent Splice Strand
CG4774-RB 1..1437 1..1437 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:55:05 Download gff for AT14373.complete
Subject Subject Range Query Range Percent Splice Strand
CLS-RB 1..1437 1..1437 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:54:52 Download gff for AT14373.complete
Subject Subject Range Query Range Percent Splice Strand
CG4774-RB 1..1437 1..1437 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:58:29 Download gff for AT14373.complete
Subject Subject Range Query Range Percent Splice Strand
CLS-RB 1..1437 1..1437 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:08:08 Download gff for AT14373.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25685236..25685500 1173..1437 100 <- Minus
3R 25685567..25685702 1037..1172 100 <- Minus
3R 25685768..25685983 821..1036 100 <- Minus
3R 25686315..25687014 121..820 100 <- Minus
3R 25687251..25687370 1..120 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:08:08 Download gff for AT14373.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25685236..25685500 1173..1437 100 <- Minus
3R 25685567..25685702 1037..1172 100 <- Minus
3R 25685768..25685983 821..1036 100 <- Minus
3R 25686315..25687014 121..820 100 <- Minus
3R 25687251..25687370 1..120 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:08:08 Download gff for AT14373.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25685236..25685500 1173..1437 100 <- Minus
3R 25685567..25685702 1037..1172 100 <- Minus
3R 25685768..25685983 821..1036 100 <- Minus
3R 25686315..25687014 121..820 100 <- Minus
3R 25687251..25687370 1..120 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:55:05 Download gff for AT14373.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21510958..21511222 1173..1437 100 <- Minus
arm_3R 21511289..21511424 1037..1172 100 <- Minus
arm_3R 21511490..21511705 821..1036 100 <- Minus
arm_3R 21512037..21512736 121..820 100 <- Minus
arm_3R 21512973..21513092 1..120 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:27:03 Download gff for AT14373.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25426067..25426331 1173..1437 100 <- Minus
3R 25426398..25426533 1037..1172 100 <- Minus
3R 25426599..25426814 821..1036 100 <- Minus
3R 25427146..25427845 121..820 100 <- Minus
3R 25428082..25428201 1..120 100   Minus

AT14373.pep Sequence

Translation from 319 to 1287

> AT14373.pep
MLPAIIFRQVQRPLHHGAATLEHVLGVGGSSFVNCLNRYAAATGFIRISF
LDIKRRRNYELARLRLYADEKKQSLHLRTLQGRHLLQGVIERKNFLVDDI
REARHKVQERVREKIDEIREERENIMTIPNMLTISRAVLSPYIGYVIVQG
DFTLGMSLLAFAGITDLLDGQIARRWPSQASKFGSFLDPMADKLLMGSLV
ISLCYTDLLPMWLMGIVVFRDVFLLGAGFVIRYISLPPPKTFSRYFDATH
VTAQLEPTLLSKINTGVQLATIGLSLGAPIWNYLDHPALQGLWYLTGLTT
AATALSYVMNRHNTFKIIQKKT*

AT14373.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:01:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18236-PA 329 GF18236-PA 1..328 1..320 1625 93.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:01:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12226-PA 322 GG12226-PA 1..322 1..322 1697 99.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:01:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18601-PA 331 GH18601-PA 1..331 1..322 1443 83.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:16:07
Subject Length Description Subject Range Query Range Score Percent Strand
CLS-PD 322 CG4774-PD 1..322 1..322 1648 100 Plus
CLS-PC 322 CG4774-PC 1..322 1..322 1648 100 Plus
CLS-PA 322 CG4774-PA 1..322 1..322 1648 100 Plus
CLS-PB 322 CG4774-PB 1..322 1..322 1648 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:01:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10348-PA 336 GI10348-PA 1..336 1..322 1499 84.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:01:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22301-PA 133 GL22301-PA 1..133 190..322 685 97 Plus
Dper\GL22300-PA 121 GL22300-PA 1..115 1..110 465 80.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:01:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18422-PA 327 GA18422-PA 1..327 1..322 1545 89.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:01:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10226-PA 322 GM10226-PA 1..322 1..322 1702 99.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:01:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18179-PA 322 GD18179-PA 1..322 1..322 1706 99.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:01:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10200-PA 336 GJ10200-PA 1..335 1..321 1509 85.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:01:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14391-PA 336 GK14391-PA 1..336 1..322 1482 84.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:01:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10674-PA 322 GE10674-PA 1..322 1..322 1697 99.4 Plus

AT14373.hyp Sequence

Translation from 319 to 1287

> AT14373.hyp
MLPAIIFRQVQRPLHHGAATLEHVLGVGGSSFVNCLNRYAAATGFIRISF
LDIKRRRNYELARLRLYADEKKQSLHLRTLQGRHLLQGVIERKNFLVDDI
REARHKVQERVREKIDEIREERENIMTIPNMLTISRAVLSPYIGYVIVQG
DFTLGMSLLAFAGITDLLDGQIARRWPSQASKFGSFLDPMADKLLMGSLV
ISLCYTDLLPMWLMGIVVFRDVFLLGAGFVIRYISLPPPKTFSRYFDATH
VTAQLEPTLLSKINTGVQLATIGLSLGAPIWNYLDHPALQGLWYLTGLTT
AATALSYVMNRHNTFKIIQKKT*

AT14373.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 05:50:36
Subject Length Description Subject Range Query Range Score Percent Strand
CLS-PD 322 CG4774-PD 1..322 1..322 1648 100 Plus
CLS-PC 322 CG4774-PC 1..322 1..322 1648 100 Plus
CLS-PA 322 CG4774-PA 1..322 1..322 1648 100 Plus
CLS-PB 322 CG4774-PB 1..322 1..322 1648 100 Plus