Clone AT14778 Report

Search the DGRC for AT14778

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:147
Well:78
Vector:pOTB7
Associated Gene/TranscriptCG6907-RA
Protein status:AT14778.pep: gold
Preliminary Size:1457
Sequenced Size:1689

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6907 2002-01-01 Sim4 clustering to Release 2
CG6907 2002-01-11 Blastp of sequenced clone
CG6907 2003-01-01 Sim4 clustering to Release 3
CG6907 2008-04-29 Release 5.5 accounting
CG6907 2008-08-15 Release 5.9 accounting
CG6907 2008-12-18 5.12 accounting

Clone Sequence Records

AT14778.complete Sequence

1689 bp (1689 high quality bases) assembled on 2002-01-11

GenBank Submission: AY075211

> AT14778.complete
CTTGACTTGTGCCTCTTATATTCAACCAATTATACAACATGAACACAAAT
TTATTTTTAAGCAATAAAAGCTAAACTATCGCCCTACCCAGAACTTGCGA
ATTAACAGCTGTTTTGACTATCGATACACAATTGGAGAGTGTGCCCCCAT
TGGCAGCCATCGAGAATAGATAATATCGAAAGTATCGAAATAGAAGTTTA
CGCGAAGAGAAGGAAACACATAGCAAAAAAGAACGCAAAAAATAAAGGTT
AGCGAAATCTGTGCGACGAAGATGACCAGTTTCCGCAAGCGCACCGTGCA
GAAGCCAATCCGCGGCACCCGCACCTCGCCGCACACGGCGCAGGTGATCA
CCTCCAGCGGAAATCCGTACTTGGACGTGGTCATTGGCGGCGGTCTGCCC
ATGGGTTCGATCTGCCTGATCGAGGAGGATCGCTTCATGACGCACGCCAA
GGTGCTGGCCAAGTACTTTCTGGCCGAGGGTGTGATTTCCAAGCAGGAGA
TATTTCTGGGCAGCCTGGACGACATTCCAGCCGAGATGCTGCGCCGTCTG
CCCAGACCGCTGACCGACCAGGAATCGATGGAGCAAAGCGAGGTGCAAGC
GCTGGGAGATGCTGGCGCCGAAAATGGCCTAAGGATCGCCTGGCGATACA
ATGATCTGCCGCTGGTGAATTCGGAACATGCCACAGCAAAAATCGGACAC
CATTTCAATCTGATGGAACAGATGGACTCCATGATGCTCTACAATGTCAA
GACTACCTTGTGGGACGATAGCCCCAAGCATCTGGACATCGTCATTGACG
AGGAGTTCTCCAAGAGCAGCTCCCCAACCACTCCGTCGCTGGAGCAGCAG
CCCGTGGAGGATGCCCCACCGATTCCGGGCACGGAGACCGCTCCGCAGGA
GAAGATGCCAGCCCAGGAGGAGGAGAACTCTGCCAACAACAATAATAACA
ACAATAACAATAGCAGCAGCGTGACCAGTAGCACAAAAACAGGCAGCCAG
GATTCGCCGTTGCAGGTGTTCCACAACCCTCGGTACAAAGGACTGCTCAA
CGATATTCAACAGCTGCTGCGTAACGAGAGCTTCGTCGCTGGGACCAAGA
ATAACCTGTGCCGCGTCTGCCTGACCTCGTTGGGATCGCCGCTGTGGTAC
GACGAACACTTCGGCGAGGATCTGATCAAGTTTCTCACACTGCTGATGGC
CAGTGTGCGGAACTGCAACTCCGTGTGCCTGATCACGATGCCCATGCACC
TGATTGCCAAGTACGATGCCAGCCTAGTGCCCAAGATCCGCCAACTGGTG
GACTATGCCATCGAACTGGAGTCGTTTGCCGGTTCGGAGCGTGAAACGCA
CCCAGCCTTCAAGGAGTACAGTGGCCTGCTCCATTTGCACAAGATGTCGG
CCATCAATACGCTGGCCGTGCACATGCCGGAAACCCCGGACTTGGCCTTC
AAGTTGCGCCGCAAGAAGTTCATCATCGAAAAGTTCCATCTGCCCCCGGA
GCTGCAGGAGTCATCTGCCAAGCCGGACAATTGCATCTCTGGTCTACTGA
GCAATTCCAATGCCACAGCCTCGCTGGATTTCTAGCTGTCAGCGGAATTA
GAAACTAAGTGCGCGTATGTAACCACGAAACAACTAAATTGCATAATAAT
AAGCCAAGTAAATGCATTAATAAAAAAAAAAAAAAAAAA

AT14778.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:30:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG6907-RA 1671 CG6907-RA 1..1671 1..1671 8325 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:44:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 5523237..5524907 1..1671 8325 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:49:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:44:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5524139..5525810 1..1672 8330 99.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:58:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5524139..5525810 1..1672 8330 99.8 Plus
Blast to na_te.dros performed 2019-03-16 18:44:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 5648..5713 933..997 129 68.2 Plus
mdg3 5519 mdg3 DMMDG3 5519bp Derived from X95908 (e990667) (Rel. 49, Last updated, Version 3). 5052..5130 173..251 115 63.7 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 19..46 935..962 113 89.3 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 22..49 935..962 113 89.3 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 7057..7084 935..962 113 89.3 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 7060..7087 935..962 113 89.3 Plus

AT14778.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:44:43 Download gff for AT14778.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 5523237..5524907 1..1671 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:06:11 Download gff for AT14778.complete
Subject Subject Range Query Range Percent Splice Strand
CG6907-RA 1..1314 272..1585 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:49:14 Download gff for AT14778.complete
Subject Subject Range Query Range Percent Splice Strand
CG6907-RA 1..1314 272..1585 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:25:24 Download gff for AT14778.complete
Subject Subject Range Query Range Percent Splice Strand
CG6907-RA 1..1314 272..1585 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:16:21 Download gff for AT14778.complete
Subject Subject Range Query Range Percent Splice Strand
CG6907-RA 1..1314 272..1585 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:48:43 Download gff for AT14778.complete
Subject Subject Range Query Range Percent Splice Strand
CG6907-RA 1..1314 272..1585 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:13:11 Download gff for AT14778.complete
Subject Subject Range Query Range Percent Splice Strand
CG6907-RA 1..1671 1..1671 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:49:14 Download gff for AT14778.complete
Subject Subject Range Query Range Percent Splice Strand
CG6907-RA 1..1671 1..1671 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:24 Download gff for AT14778.complete
Subject Subject Range Query Range Percent Splice Strand
CG6907-RA 1..1671 1..1671 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:16:21 Download gff for AT14778.complete
Subject Subject Range Query Range Percent Splice Strand
CG6907-RA 1..1671 1..1671 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:48:43 Download gff for AT14778.complete
Subject Subject Range Query Range Percent Splice Strand
CG6907-RA 1..1671 1..1671 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:44:43 Download gff for AT14778.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5524139..5525809 1..1671 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:44:43 Download gff for AT14778.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5524139..5525809 1..1671 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:44:43 Download gff for AT14778.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5524139..5525809 1..1671 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:24 Download gff for AT14778.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5524139..5525809 1..1671 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:50:19 Download gff for AT14778.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5524139..5525809 1..1671 99   Plus

AT14778.hyp Sequence

Translation from 271 to 1584

> AT14778.hyp
MTSFRKRTVQKPIRGTRTSPHTAQVITSSGNPYLDVVIGGGLPMGSICLI
EEDRFMTHAKVLAKYFLAEGVISKQEIFLGSLDDIPAEMLRRLPRPLTDQ
ESMEQSEVQALGDAGAENGLRIAWRYNDLPLVNSEHATAKIGHHFNLMEQ
MDSMMLYNVKTTLWDDSPKHLDIVIDEEFSKSSSPTTPSLEQQPVEDAPP
IPGTETAPQEKMPAQEEENSANNNNNNNNNSSSVTSSTKTGSQDSPLQVF
HNPRYKGLLNDIQQLLRNESFVAGTKNNLCRVCLTSLGSPLWYDEHFGED
LIKFLTLLMASVRNCNSVCLITMPMHLIAKYDASLVPKIRQLVDYAIELE
SFAGSERETHPAFKEYSGLLHLHKMSAINTLAVHMPETPDLAFKLRRKKF
IIEKFHLPPELQESSAKPDNCISGLLSNSNATASLDF*

AT14778.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 05:56:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG6907-PB 437 CG6907-PB 1..437 1..437 2269 100 Plus
CG6907-PA 437 CG6907-PA 1..437 1..437 2269 100 Plus

AT14778.pep Sequence

Translation from 271 to 1584

> AT14778.pep
MTSFRKRTVQKPIRGTRTSPHTAQVITSSGNPYLDVVIGGGLPMGSICLI
EEDRFMTHAKVLAKYFLAEGVISKQEIFLGSLDDIPAEMLRRLPRPLTDQ
ESMEQSEVQALGDAGAENGLRIAWRYNDLPLVNSEHATAKIGHHFNLMEQ
MDSMMLYNVKTTLWDDSPKHLDIVIDEEFSKSSSPTTPSLEQQPVEDAPP
IPGTETAPQEKMPAQEEENSANNNNNNNNNSSSVTSSTKTGSQDSPLQVF
HNPRYKGLLNDIQQLLRNESFVAGTKNNLCRVCLTSLGSPLWYDEHFGED
LIKFLTLLMASVRNCNSVCLITMPMHLIAKYDASLVPKIRQLVDYAIELE
SFAGSERETHPAFKEYSGLLHLHKMSAINTLAVHMPETPDLAFKLRRKKF
IIEKFHLPPELQESSAKPDNCISGLLSNSNATASLDF*

AT14778.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:42:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15145-PA 435 GF15145-PA 1..435 1..437 1804 83.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:42:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25077-PA 430 GG25077-PA 1..430 1..437 1940 87.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:42:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22667-PA 494 GH22667-PA 1..494 1..437 1490 63.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:38:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG6907-PB 437 CG6907-PB 1..437 1..437 2269 100 Plus
CG6907-PA 437 CG6907-PA 1..437 1..437 2269 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:42:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21177-PA 489 GI21177-PA 294..489 248..437 741 73 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:42:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25849-PA 446 GL25849-PA 1..446 1..437 1633 72.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:42:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19948-PA 446 GA19948-PA 1..446 1..437 1633 72.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:42:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18552-PA 436 GM18552-PA 1..436 1..437 2206 95.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:42:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23347-PA 240 GD23347-PA 13..240 209..437 1175 96.9 Plus
Dsim\GD23346-PA 174 GD23346-PA 1..157 1..157 842 99.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:42:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21034-PA 436 GJ21034-PA 1..436 1..437 1432 66.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:42:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22077-PA 445 GK22077-PA 1..445 1..437 1447 66.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:42:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25450-PA 439 GE25450-PA 1..439 1..437 1966 89.3 Plus