Clone AT15039 Report

Search the DGRC for AT15039

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:150
Well:39
Vector:pOTB7
Associated Gene/TranscriptCG12147-RA
Protein status:AT15039.pep: gold
Preliminary Size:1434
Sequenced Size:1907

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12147 2002-01-01 Sim4 clustering to Release 2
CG12147 2002-04-21 Blastp of sequenced clone
CG12147 2003-01-01 Sim4 clustering to Release 3
CG12147 2008-04-29 Release 5.5 accounting
CG12147 2008-08-15 Release 5.9 accounting
CG12147 2008-12-18 5.12 accounting

Clone Sequence Records

AT15039.complete Sequence

1907 bp (1907 high quality bases) assembled on 2002-04-21

GenBank Submission: AY113258

> AT15039.complete
CTTATCGAAGGTGGCAACAATAGATCGCCAGAAACATCAACTTCCTGCCT
GCGTAGAAGTCTGGCAAGCTCCCGAATCGCATGGCGGAACGGGAAAAGGG
GCGTGCCAAGGACGACAGACGTTGGCAAGGCCGTTCCGATGTTCACCAAT
CCAAGCCGCAGATCCGAAAGGAGCGCCGCCATCCGCCACAGCCAAATCAT
CCTCATGAGAAGGACCAGCGACAAGATCGTCGGTTCTCAGAGGAGAAGCA
ATCCCTACCGGAAATTATAGTGGCGGGAAAGTACCGTTTATTGAAGCGTA
TTGGAAACGGATCCTTCGGCGAACTATTCCAGGCCGAGGGCCTCAAGTAC
CACGAGAAGGTGGCCATAAAGCTGGAGAGCTCCACGGTCAAGCACCCATT
GCTGCCACGCGAGGCCAGGATCTATGGCATCCTGCAGGGCGGACTGGGCA
TCCCGCATGTGAAGCACTATGCCACCGAGGGGGCGTACAATGTCATGGTG
ATGGACCTCCTGGGGCCCACGCTGGAGGATCTGCTAAACCTCTGCTCGCG
CTCCTTTAGCATGAAGACCACCCTGATGCTGGCCGACCAGATCCTTGCCC
GCGTGGAGCTGCTCCACCGGAGATGCTTTATCCACCGGGACATCAAGCCG
GACAACTTCCTGATGGGCCTGAACCGCCACCAGACTCAGGTGTACATGAT
TGACTTCGGACTGGCCAAAAAGTTCTACAGCCTGCGCACCCAGAAGCACA
TCGGCTACACGGAGAACCGGGACCTGGTAGGTACGGCCCGGTACGCCAGT
GTGCGGGCCCATTACGCGGAGCAGAGTCGTCGGGATGACCTAGAGTCCGT
GGGCTACCTGCTGCTCTACTTCCAGCGGGGTCGTCTTCCCTGGCAGGGAA
TCCGGGCGCAGTCGCAGGCCCAGAAGTACGAGAAGATAGCTGAGTACAAG
GCCAACATCCCACTCCAGCAACTCTGCTCCGGATTGCCTGTCGAGTTCTT
CATGTATCTGAAGTACTGCCGCAAGCTGCACTTCGCCGAGAAGCCGGATT
ACGTGTATCTGCAGCAGCTGTTCAAGGTGCTCTTCCGGAACCAGTACAAG
GTGTGTGACTTCCTCTTCGACTGGGTCGTTTTGAAGCGAGAGTCGCCGGA
GCAACAATCGCAGCAAAAGGGTAGGGAAAGGGACAGGGGTGGAAAAAGGA
ACGTGGTGGTGCAGAAGGAGAGGCATCGAAACAAGGATAGGGATAGTGAT
ACGCAGAGGTGTCGAATTAAGAATGGGGGAGATCTGCTCGAGATCGAGGA
AAATGAAAGTACCACTGGGGAAGACCCAAACGAAGATAAGCCTCAAAAAA
AGCATGGCAAGGCCTGCTCCTGCAGCTACCACCTCCAGAAGAAGCGCCTC
CAGGATCGGGATAGGAGGGCGCCTCTGATGACCGAGCGGAGGATCCTTTC
GGGGGAGCAGGAGCAGGAGCTGGAGCTGGAGCTGCGGGGGTCCCCTCAGA
TGCCCTGTCTTTGATATTACGCTGTTTGTAAATGTCTCGCGTGTTAATTA
CCTGCCGAGCAACTATATTTAGCATGACTTAACCATTTACCCAGCTCAGT
TCCTTTGTTCGAAAAATCAACGTCTTGGGTAATCGGGAAAGCTCTTGGGC
GCCCTCAGAAGTCAACTGGCAGCCTCGCCAACAATGGGACCAACTTTGCG
GGGCGTCCCACACGGTGAAATCGATACCGTGGAAACTTGGGGGATATAAA
GGATAATGGAGGCAATGTGGGACTATTCTACCAACATATCCTACACTAAA
ATAAGAAATGCATTTTTATACAAAATTTAAAAAGTCGTAACAAAAGTTTA
CCAAGTAGTTTTTGCAATAAAATAGTTTATGAACAATATAAAAAAAAAAA
AAAAAAA

AT15039.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:14:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG12147-RA 1889 CG12147-RA 1..1889 1..1889 9445 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:47:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 1251028..1252916 1889..1 9445 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:49:36 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:47:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5425367..5427257 1891..1 9455 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:45:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 5166198..5168088 1891..1 9455 100 Minus
Blast to na_te.dros performed on 2019-03-16 15:47:33 has no hits.

AT15039.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:48:47 Download gff for AT15039.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 1251028..1252916 1..1889 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:06:27 Download gff for AT15039.complete
Subject Subject Range Query Range Percent Splice Strand
CG12147-RA 1..1434 81..1514 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:01:18 Download gff for AT15039.complete
Subject Subject Range Query Range Percent Splice Strand
CG12147-RA 1..1434 81..1514 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:54:14 Download gff for AT15039.complete
Subject Subject Range Query Range Percent Splice Strand
CG12147-RA 1..1434 81..1514 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:54:41 Download gff for AT15039.complete
Subject Subject Range Query Range Percent Splice Strand
CG12147-RA 1..1434 81..1514 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:54:01 Download gff for AT15039.complete
Subject Subject Range Query Range Percent Splice Strand
CG12147-RA 1..1434 81..1514 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:42:38 Download gff for AT15039.complete
Subject Subject Range Query Range Percent Splice Strand
CG12147-RA 1..1889 1..1889 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:01:18 Download gff for AT15039.complete
Subject Subject Range Query Range Percent Splice Strand
CG12147-RA 1..1889 1..1889 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:54:14 Download gff for AT15039.complete
Subject Subject Range Query Range Percent Splice Strand
CG12147-RA 1..1889 1..1889 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:54:41 Download gff for AT15039.complete
Subject Subject Range Query Range Percent Splice Strand
CG12147-RA 1..1889 1..1889 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:54:01 Download gff for AT15039.complete
Subject Subject Range Query Range Percent Splice Strand
CG12147-RA 1..1889 1..1889 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:48:47 Download gff for AT15039.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5425369..5427257 1..1889 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:48:47 Download gff for AT15039.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5425369..5427257 1..1889 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:48:47 Download gff for AT15039.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5425369..5427257 1..1889 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:54:14 Download gff for AT15039.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1251091..1252979 1..1889 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:26:52 Download gff for AT15039.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5166200..5168088 1..1889 100   Minus

AT15039.pep Sequence

Translation from 80 to 1513

> AT15039.pep
MAEREKGRAKDDRRWQGRSDVHQSKPQIRKERRHPPQPNHPHEKDQRQDR
RFSEEKQSLPEIIVAGKYRLLKRIGNGSFGELFQAEGLKYHEKVAIKLES
STVKHPLLPREARIYGILQGGLGIPHVKHYATEGAYNVMVMDLLGPTLED
LLNLCSRSFSMKTTLMLADQILARVELLHRRCFIHRDIKPDNFLMGLNRH
QTQVYMIDFGLAKKFYSLRTQKHIGYTENRDLVGTARYASVRAHYAEQSR
RDDLESVGYLLLYFQRGRLPWQGIRAQSQAQKYEKIAEYKANIPLQQLCS
GLPVEFFMYLKYCRKLHFAEKPDYVYLQQLFKVLFRNQYKVCDFLFDWVV
LKRESPEQQSQQKGRERDRGGKRNVVVQKERHRNKDRDSDTQRCRIKNGG
DLLEIEENESTTGEDPNEDKPQKKHGKACSCSYHLQKKRLQDRDRRAPLM
TERRILSGEQEQELELELRGSPQMPCL*

AT15039.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:57:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17711-PA 535 GF17711-PA 190..461 53..324 982 68.4 Plus
Dana\GF21383-PA 337 GF21383-PA 8..312 56..359 963 54.8 Plus
Dana\GF23293-PA 441 GF23293-PA 2..311 61..364 885 53.2 Plus
Dana\GF15092-PA 388 GF15092-PA 18..312 58..351 814 49.8 Plus
Dana\GF19391-PA 344 GF19391-PA 15..301 66..351 773 49.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:57:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11027-PA 484 GG11027-PA 5..467 3..457 2078 85.5 Plus
Dere\GG17734-PA 337 GG17734-PA 8..312 56..359 963 54.8 Plus
Dere\GG11892-PA 440 GG11892-PA 2..298 61..356 882 54.2 Plus
Dere\GG21733-PA 394 GG21733-PA 18..343 59..390 861 48.6 Plus
Dere\GG17715-PA 344 GG17715-PA 15..301 66..351 765 50 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:57:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22602-PA 366 GH22602-PA 12..343 55..397 1078 57.6 Plus
Dgri\GH12595-PA 343 GH12595-PA 3..314 51..361 951 52.9 Plus
Dgri\GH12114-PA 343 GH12114-PA 13..314 61..361 933 52.3 Plus
Dgri\GH14346-PA 439 GH14346-PA 2..318 61..374 885 52.7 Plus
Dgri\GH10150-PA 370 GH10150-PA 22..370 63..427 816 44.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:28:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG12147-PA 477 CG12147-PA 1..477 1..477 2521 100 Plus
CkIalpha-PG 337 CG2028-PG 8..312 56..359 948 54.8 Plus
CkIalpha-PF 337 CG2028-PF 8..312 56..359 948 54.8 Plus
CkIalpha-PD 337 CG2028-PD 8..312 56..359 948 54.8 Plus
CkIalpha-PE 337 CG2028-PE 8..312 56..359 948 54.8 Plus
CkIalpha-PA 337 CG2028-PA 8..312 56..359 948 54.8 Plus
CkIalpha-PB 337 CG2028-PB 8..312 56..359 948 54.8 Plus
dco-PE 440 CG2048-PE 2..316 61..370 861 52.4 Plus
dco-PD 440 CG2048-PD 2..316 61..370 861 52.4 Plus
dco-PC 440 CG2048-PC 2..316 61..370 861 52.4 Plus
dco-PB 440 CG2048-PB 2..316 61..370 861 52.4 Plus
dco-PA 440 CG2048-PA 2..316 61..370 861 52.4 Plus
CG7094-PA 390 CG7094-PA 18..372 59..399 855 47 Plus
CG2577-PA 344 CG2577-PA 15..301 66..351 750 49.1 Plus
gish-PC 427 CG6963-PC 15..348 62..399 679 43.2 Plus
gish-PM 468 CG6963-PM 56..389 62..399 679 43.2 Plus
gish-PH 468 CG6963-PH 56..389 62..399 679 43.2 Plus
gish-PD 468 CG6963-PD 56..389 62..399 679 43.2 Plus
gish-PB 468 CG6963-PB 56..389 62..399 679 43.2 Plus
gish-PI 474 CG6963-PI 56..389 62..399 679 43.2 Plus
gish-PG 476 CG6963-PG 64..397 62..399 679 43.2 Plus
gish-PL 537 CG6963-PL 56..389 62..399 679 43.2 Plus
gish-PA 422 CG6963-PA 15..343 62..399 676 42.4 Plus
gish-PE 463 CG6963-PE 56..384 62..399 676 42.4 Plus
gish-PF 358 CG6963-PF 56..351 62..348 668 45.9 Plus
gish-PK 496 CG6963-PK 56..411 62..399 648 40.7 Plus
CG9962-PA 319 CG9962-PA 17..319 70..376 642 41.9 Plus
gish-PJ 521 CG6963-PJ 56..422 62..392 637 39.9 Plus
Asator-PG 1144 CG11533-PG 152..449 47..348 370 32.1 Plus
Asator-PJ 1261 CG11533-PJ 151..448 47..348 370 32.1 Plus
Asator-PE 1262 CG11533-PE 152..449 47..348 370 32.1 Plus
Asator-PI 1348 CG11533-PI 151..448 47..348 370 32.1 Plus
Asator-PD 1349 CG11533-PD 152..449 47..348 370 32.1 Plus
Asator-PF 811 CG11533-PF 9..293 60..348 368 33.2 Plus
Asator-PK 1106 CG11533-PK 9..293 60..348 368 33.2 Plus
Asator-PL 1106 CG11533-PL 9..293 60..348 368 33.2 Plus
Asator-PH 1193 CG11533-PH 9..293 60..348 368 33.2 Plus
ball-PB 599 CG6386-PB 42..321 63..324 209 28.8 Plus
ball-PA 599 CG6386-PA 42..321 63..324 209 28.8 Plus
CG8878-PC 1004 CG8878-PC 503..653 185..332 187 32.2 Plus
CG8878-PB 1004 CG8878-PB 503..653 185..332 187 32.2 Plus
CG8878-PA 1004 CG8878-PA 503..653 185..332 187 32.2 Plus
Dyrk3-PE 828 CG40478-PE 267..424 59..210 157 30.2 Plus
Dyrk3-PC 828 CG40478-PC 267..424 59..210 157 30.2 Plus
Dyrk3-PA 828 CG40478-PA 267..424 59..210 157 30.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:57:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23642-PA 380 GI23642-PA 13..314 53..354 1147 67.2 Plus
Dmoj\GI16325-PA 343 GI16325-PA 14..314 62..361 932 52.5 Plus
Dmoj\GI16225-PA 343 GI16225-PA 8..312 56..359 926 51.8 Plus
Dmoj\GI22355-PA 379 GI22355-PA 10..314 51..354 830 51.1 Plus
Dmoj\GI16025-PA 344 GI16025-PA 13..322 64..372 707 46.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:57:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22167-PA 475 GL22167-PA 132..465 61..395 952 54.7 Plus
Dper\GL13140-PA 288 GL13140-PA 8..287 56..334 907 56.4 Plus
Dper\GL25396-PA 345 GL25396-PA 11..323 63..380 793 49.4 Plus
Dper\GL15889-PA 374 GL15889-PA 29..336 63..370 776 47.9 Plus
Dper\GL13966-PA 404 GL13966-PA 2..284 61..356 702 47.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:57:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15193-PA 337 GA15193-PA 8..314 56..361 960 54.1 Plus
Dpse\GA27399-PB 473 GA27399-PB 130..437 61..366 947 55.8 Plus
Dpse\GA15205-PD 439 GA15205-PD 2..298 61..356 883 54.2 Plus
Dpse\GA15205-PB 439 GA15205-PB 2..298 61..356 883 54.2 Plus
Dpse\GA15396-PA 345 GA15396-PA 11..323 63..380 789 49.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:57:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10635-PA 438 GM10635-PA 1..438 1..477 2091 85.2 Plus
Dsec\GM11579-PA 337 GM11579-PA 8..312 56..359 964 54.8 Plus
Dsec\GM12110-PA 440 GM12110-PA 2..298 61..356 882 54.2 Plus
Dsec\GM17114-PA 379 GM17114-PA 18..361 59..399 841 47.1 Plus
Dsec\GM11559-PA 344 GM11559-PA 15..301 66..351 759 49.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:57:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16644-PA 395 GD16644-PA 2..316 61..370 880 52.4 Plus
Dsim\GD17076-PA 344 GD17076-PA 15..301 66..351 759 49.7 Plus
Dsim\GD19086-PA 476 GD19086-PA 64..397 62..399 699 42.9 Plus
Dsim\GD22814-PA 319 GD22814-PA 17..314 70..366 637 41.9 Plus
Dsim\GD24797-PA 157 GD24797-PA 8..149 56..197 468 55.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:57:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24718-PA 364 GJ24718-PA 16..360 53..385 1158 62 Plus
Dvir\GJ15916-PA 343 GJ15916-PA 8..312 56..359 949 53.4 Plus
Dvir\GJ15665-PA 343 GJ15665-PA 13..317 61..364 941 52.8 Plus
Dvir\GJ10658-PA 443 GJ10658-PA 2..298 61..356 886 54.2 Plus
Dvir\GJ21295-PA 379 GJ21295-PA 10..308 51..348 830 51.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:57:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22839-PA 415 GK22839-PA 78..380 61..363 1255 74.3 Plus
Dwil\GK25517-PA 337 GK25517-PA 8..314 56..361 954 53.7 Plus
Dwil\GK22559-PA 425 GK22559-PA 2..316 61..370 891 52.7 Plus
Dwil\GK18163-PA 397 GK18163-PA 7..323 48..363 867 49.2 Plus
Dwil\GK24490-PA 325 GK24490-PA 12..303 63..353 755 48.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25283-PA 480 GE25283-PA 1..480 1..477 2115 84.2 Plus
Dyak\GE17024-PA 337 GE17024-PA 8..312 56..359 964 54.8 Plus
Dyak\GE23340-PA 440 GE23340-PA 2..298 61..356 882 54.2 Plus
Dyak\GE13122-PA 390 GE13122-PA 22..317 63..357 826 50.3 Plus
Dyak\GE25282-PA 183 GE25282-PA 1..162 1..156 712 85.2 Plus

AT15039.hyp Sequence

Translation from 80 to 1513

> AT15039.hyp
MAEREKGRAKDDRRWQGRSDVHQSKPQIRKERRHPPQPNHPHEKDQRQDR
RFSEEKQSLPEIIVAGKYRLLKRIGNGSFGELFQAEGLKYHEKVAIKLES
STVKHPLLPREARIYGILQGGLGIPHVKHYATEGAYNVMVMDLLGPTLED
LLNLCSRSFSMKTTLMLADQILARVELLHRRCFIHRDIKPDNFLMGLNRH
QTQVYMIDFGLAKKFYSLRTQKHIGYTENRDLVGTARYASVRAHYAEQSR
RDDLESVGYLLLYFQRGRLPWQGIRAQSQAQKYEKIAEYKANIPLQQLCS
GLPVEFFMYLKYCRKLHFAEKPDYVYLQQLFKVLFRNQYKVCDFLFDWVV
LKRESPEQQSQQKGRERDRGGKRNVVVQKERHRNKDRDSDTQRCRIKNGG
DLLEIEENESTTGEDPNEDKPQKKHGKACSCSYHLQKKRLQDRDRRAPLM
TERRILSGEQEQELELELRGSPQMPCL*

AT15039.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 05:56:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG12147-PA 477 CG12147-PA 1..477 1..477 2521 100 Plus
CkIalpha-PG 337 CG2028-PG 8..312 56..359 948 54.8 Plus
CkIalpha-PF 337 CG2028-PF 8..312 56..359 948 54.8 Plus
CkIalpha-PD 337 CG2028-PD 8..312 56..359 948 54.8 Plus
CkIalpha-PE 337 CG2028-PE 8..312 56..359 948 54.8 Plus