Clone AT15442 Report

Search the DGRC for AT15442

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:154
Well:42
Vector:pOTB7
Associated Gene/TranscriptCG12446-RA
Protein status:AT15442.pep: gold
Preliminary Size:2130
Sequenced Size:2696

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12446 2002-01-01 Sim4 clustering to Release 2
CG12446 2002-05-18 Blastp of sequenced clone
CG12446 2003-01-01 Sim4 clustering to Release 3
CG12446 2008-04-29 Release 5.5 accounting
CG12446 2008-08-15 Release 5.9 accounting
CG12446 2008-12-18 5.12 accounting

Clone Sequence Records

AT15442.complete Sequence

2696 bp (2696 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118688

> AT15442.complete
GAACTATCGAAACTGAACAATCCCATTTCTTTCCGTTTCACACTCCCATA
CTACATTCCGAATGTAAAGCTGAGGAGGACTTCAGATTTGAAGTGAGTCT
AAAAACGAACAGCTGCATATAGGACCCCTTCAAATGTGCGCCGCCGTCTG
CGTGATGGTCACGGTGCCCACGGAAGCCGAGGAACTGAAACTGTGCCCCA
AGCCGCTGGTTGGCGCATCATATTGCTCCAGCTGCGGTGGATGTGTAAGG
AGCAGGTGCACTGAGGAACCCAGTGGCGAGGTGTGCGAACGCTGTTGGCG
CTTGAGTCAAATAGCCGGGAGCAGTGTGCATAGAGATGCCGTTCCAATGG
CCAATACTCTCCAATACAGCACTACGTCTGCACCTATGTCCCAGGGGAGG
GCCCTGCAGCTGCTCAATCTTAAGGGGGATGCCTCTTTGGAGAAACTGCT
ACGGGCCATTGCCAAAGAGCTGCGATTGGAGAACGTCTTTTGGACGCACG
ACATCAGCGGGAGGCAGGTCCAGGCACGCTTCGACCTTCTGCAGGACGAG
CGATACGAGAGACTGCTGTGCACGTTGCAAGATTGGGGCGTCGGTGATCG
ACCCGGCACCCATGTGTCTGCCCTAACCTGCCTGGAAACCCGGGCTAAGC
CCTGCCTGCAGGTACCCAGACAAGACCATGACAATTTCGTGGATCAGCAT
CAGGAACATGGAGAGGGTCAGGGCCAGGGTCAGGGCCAGGCCCAGGGCCA
GGGCTGGCAGAGCTTCATGGACTCGGTAAGATGCAGGCTGAATGTCAACC
AGGTCGTGCGCCAAGTTCGGCGGGATGCCACCCTAACCTTTGACTTCGTG
GTGCTGCTTATTGCTGCCGCTCTGCTATCGTGCGTGGGTCTTGTCGAGAA
TAGTTTTCTTTTTCTCTCCAGCTCCATGCTGATTTCCCCTTTGATGGGCC
CAATCATAGCGGCCATATTCGGTTCAGTGATCGGCGATCGGGACCTGCGA
TGGTTGGGTCTGAAGAACGAACTCCTGGGTATAGCTGCGTCTGTGGCTAT
TGGATTCTTCTTTGGGGCCATGGTCTGTGGTTTCGGTCACTTTTTCGCGA
TTTCCAAGGGACTCACGGAGGAAATCGTCTCACGATGCGACACGCATTCC
CTTGCCATCGGAGTATGCACAGCCTTGGCTTCGGGAGCTGCGGGCGCCAT
AGCGGTTTTGGGTGGCAATACGGGGTCTCTGGTGGGCGTGGCCATCTCAG
CCTCCCTGCTGCCGCCTGCTGTTAATGCCGGACTTCTGTGGGCCCTGGCC
GTCGGAGTCCACGTACTGCCGGACGACCATGAGCCCCTGGCCAGCATGGT
GAAGCACAGGTCGTACTCCTCTCAACTTTCCGTTGAGCTACTGGTTTGTG
CAGCTGTCAGCATGGCCCTCACCCTCCTTAACATAATTTGCGTTTGGCTG
ATGGGAACGGTTGTTTTGAGGATTAAGGAAGTGGCTCCAGCGGTTCAGCG
ACACCAGAAGTTTTGGCATCATGACATCCGCACAGCACGCGAGGTGGCGC
TAGATCCAGTCCTGCAGAGTGCCATAGATCGCCTGGACAAGTCTCAACTG
GATTCGGACGCGTCACCTTACCAGCGCGCCTGGTCGCCAGGGCTAGATCG
TCAGACCGCCTCGCACACAGGAATTGGAAGCTACGACATTAACCTGTCCT
GCAGCAAGGATCAGCCGAACAACTATCACACGGTGCATGGCTTCCAGGAG
TTCTGCATCACGCTGCATCGACTTAAGTCTGCACATAAGGTCGCCCCACC
ACCGACTATAATGGAGCTGTTTACGCGCGCGCCTCCAAACTCCGACCAGA
CCAATATTGGGGGCAGTGACTTCAGCAGCTGCCGCAGTCTGCCGGACATC
AGCAGCCATTCCCGTCTCTGGCCACATAAACCACCCAGTGCTATGAGCAT
CCAAGGCCTGATCTTTGGTGCAGCCAAGAGCGGGGAACCTGGACCCGCTG
TCCCTATGGCAACAAGTTCGAATAGGGAACGCGAGAAGATGAATGTCCAC
TGGCGGGAGGAGGAACTGCAGGAGGACCTCGTCCTGAGAAGGGAAATCCT
GAACAGCAGGGAGAGCAGTCCGCTCAGAAGGCCCGGACAAGTTCTGATAC
CCCTGCCCAGGCTAGAAGGCAATTTCCTGATGAATCGGCCTCTCAGCCTG
TTGCCCTACGGCAGGTCAGAGGGAGCGAGCCCCGGGGAAAAGCAAGACGA
GTTCCAGGCTTAGCAATGTGCTCAGCTCCAAGTCATATCCTTAAACCTAA
CATCACCAGACACCATCAAGAGCTCCGCAAATATCCAAGATGAAGCCTCG
AGCTTCGTGTCCAGCTTTGATTACTCGCCGATCCGGCGGCAGTGTCCTTA
TTTGCCAACCACTTCAAGCCGCAAGCTCTGACGGTCGTGAAATATCAAAA
AAGATGTTTATACGATGAAATATGTATAAGCCAAAGAACAAAATTGTAAC
AACCATGGATGGAAAAAAATACATATAAGCCTTAACAGCACGTAAAAGCT
GATTTTGCGATGCAGTTCAGTCCAGTTAATTGCCTAATCCCAATAGATAA
ACTACCCTATAAAATAAAATGCTTTCCCCGTCAAATCTCAAAATAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

AT15442.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:04:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG12446-RA 2649 CG12446-RA 1..2646 1..2646 13230 100 Plus
CG7384-RA 2346 CG7384-RA 1211..1404 1107..1300 235 74.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:24:01
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 22205307..22207938 2644..1 12750 98.9 Minus
chr2L 23010047 chr2L 10507670..10507863 1300..1107 220 74.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:50:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:23:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 22809290..22811935 2646..1 13230 100 Minus
2L 23513712 2L 10508855..10509048 1300..1107 235 74.7 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 22794382..22797027 2646..1 13230 100 Minus
2L 23513712 2L 10508855..10509048 1300..1107 235 74.7 Minus
Blast to na_te.dros performed on 2019-03-15 21:24:00 has no hits.

AT15442.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:24:59 Download gff for AT15442.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 22205307..22207938 1..2644 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:07:02 Download gff for AT15442.complete
Subject Subject Range Query Range Percent Splice Strand
CG12446-RA 1..2130 134..2263 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:47:10 Download gff for AT15442.complete
Subject Subject Range Query Range Percent Splice Strand
CG12446-RA 1..2130 134..2263 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:46:57 Download gff for AT15442.complete
Subject Subject Range Query Range Percent Splice Strand
CG12446-RA 1..2130 134..2263 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:39:31 Download gff for AT15442.complete
Subject Subject Range Query Range Percent Splice Strand
CG12446-RA 1..2130 134..2263 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:52:22 Download gff for AT15442.complete
Subject Subject Range Query Range Percent Splice Strand
CG12446-RA 1..2130 134..2263 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:23:04 Download gff for AT15442.complete
Subject Subject Range Query Range Percent Splice Strand
CG12446-RA 1..2644 1..2644 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:47:10 Download gff for AT15442.complete
Subject Subject Range Query Range Percent Splice Strand
CG12446-RA 1..2644 1..2644 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:46:57 Download gff for AT15442.complete
Subject Subject Range Query Range Percent Splice Strand
CG12446-RA 1..2644 1..2644 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:39:31 Download gff for AT15442.complete
Subject Subject Range Query Range Percent Splice Strand
CG12446-RA 1..2644 1..2644 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:22 Download gff for AT15442.complete
Subject Subject Range Query Range Percent Splice Strand
CG12446-RA 1..2644 1..2644 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:24:59 Download gff for AT15442.complete
Subject Subject Range Query Range Percent Splice Strand
X 22809292..22811935 1..2644 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:24:59 Download gff for AT15442.complete
Subject Subject Range Query Range Percent Splice Strand
X 22809292..22811935 1..2644 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:24:59 Download gff for AT15442.complete
Subject Subject Range Query Range Percent Splice Strand
X 22809292..22811935 1..2644 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:46:57 Download gff for AT15442.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 22211128..22213771 1..2644 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:11:52 Download gff for AT15442.complete
Subject Subject Range Query Range Percent Splice Strand
X 22794384..22797027 1..2644 100   Minus

AT15442.hyp Sequence

Translation from 133 to 2262

> AT15442.hyp
MCAAVCVMVTVPTEAEELKLCPKPLVGASYCSSCGGCVRSRCTEEPSGEV
CERCWRLSQIAGSSVHRDAVPMANTLQYSTTSAPMSQGRALQLLNLKGDA
SLEKLLRAIAKELRLENVFWTHDISGRQVQARFDLLQDERYERLLCTLQD
WGVGDRPGTHVSALTCLETRAKPCLQVPRQDHDNFVDQHQEHGEGQGQGQ
GQAQGQGWQSFMDSVRCRLNVNQVVRQVRRDATLTFDFVVLLIAAALLSC
VGLVENSFLFLSSSMLISPLMGPIIAAIFGSVIGDRDLRWLGLKNELLGI
AASVAIGFFFGAMVCGFGHFFAISKGLTEEIVSRCDTHSLAIGVCTALAS
GAAGAIAVLGGNTGSLVGVAISASLLPPAVNAGLLWALAVGVHVLPDDHE
PLASMVKHRSYSSQLSVELLVCAAVSMALTLLNIICVWLMGTVVLRIKEV
APAVQRHQKFWHHDIRTAREVALDPVLQSAIDRLDKSQLDSDASPYQRAW
SPGLDRQTASHTGIGSYDINLSCSKDQPNNYHTVHGFQEFCITLHRLKSA
HKVAPPPTIMELFTRAPPNSDQTNIGGSDFSSCRSLPDISSHSRLWPHKP
PSAMSIQGLIFGAAKSGEPGPAVPMATSSNREREKMNVHWREEELQEDLV
LRREILNSRESSPLRRPGQVLIPLPRLEGNFLMNRPLSLLPYGRSEGASP
GEKQDEFQA*

AT15442.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 05:58:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG12446-PA 709 CG12446-PA 1..709 1..709 3695 100 Plus
CG7384-PA 605 CG7384-PA 5..506 3..510 971 44 Plus
CG34109-PC 800 CG34109-PC 156..520 102..470 508 34.6 Plus

AT15442.pep Sequence

Translation from 133 to 2262

> AT15442.pep
MCAAVCVMVTVPTEAEELKLCPKPLVGASYCSSCGGCVRSRCTEEPSGEV
CERCWRLSQIAGSSVHRDAVPMANTLQYSTTSAPMSQGRALQLLNLKGDA
SLEKLLRAIAKELRLENVFWTHDISGRQVQARFDLLQDERYERLLCTLQD
WGVGDRPGTHVSALTCLETRAKPCLQVPRQDHDNFVDQHQEHGEGQGQGQ
GQAQGQGWQSFMDSVRCRLNVNQVVRQVRRDATLTFDFVVLLIAAALLSC
VGLVENSFLFLSSSMLISPLMGPIIAAIFGSVIGDRDLRWLGLKNELLGI
AASVAIGFFFGAMVCGFGHFFAISKGLTEEIVSRCDTHSLAIGVCTALAS
GAAGAIAVLGGNTGSLVGVAISASLLPPAVNAGLLWALAVGVHVLPDDHE
PLASMVKHRSYSSQLSVELLVCAAVSMALTLLNIICVWLMGTVVLRIKEV
APAVQRHQKFWHHDIRTAREVALDPVLQSAIDRLDKSQLDSDASPYQRAW
SPGLDRQTASHTGIGSYDINLSCSKDQPNNYHTVHGFQEFCITLHRLKSA
HKVAPPPTIMELFTRAPPNSDQTNIGGSDFSSCRSLPDISSHSRLWPHKP
PSAMSIQGLIFGAAKSGEPGPAVPMATSSNREREKMNVHWREEELQEDLV
LRREILNSRESSPLRRPGQVLIPLPRLEGNFLMNRPLSLLPYGRSEGASP
GEKQDEFQA*

AT15442.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:09:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22161-PA 707 GF22161-PA 12..706 12..708 2121 62.6 Plus
Dana\GF14088-PA 617 GF14088-PA 4..515 2..510 1014 43.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:09:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17508-PA 697 GG17508-PA 14..697 14..709 2714 78.8 Plus
Dere\GG10378-PA 607 GG10378-PA 4..506 2..510 1002 43.6 Plus
Dere\GG10085-PA 493 GG10085-PA 125..482 79..451 498 34 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:09:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12868-PA 648 GH12868-PA 45..617 89..648 1457 55.8 Plus
Dgri\GH10106-PA 605 GH10106-PA 99..516 92..510 967 47.4 Plus
Dgri\GH11075-PA 138 GH11075-PA 1..127 332..451 236 41.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:24:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG12446-PA 709 CG12446-PA 1..709 1..709 3695 100 Plus
CG7384-PA 605 CG7384-PA 5..506 3..510 971 44 Plus
CG34109-PC 800 CG34109-PC 156..520 102..470 508 34.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:09:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14964-PA 714 GI14964-PA 63..531 87..549 1506 63.5 Plus
Dmoj\GI14424-PA 626 GI14424-PA 117..533 92..510 954 46 Plus
Dmoj\GI17594-PA 288 GI17594-PA 153..277 334..451 224 41.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:09:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26408-PA 613 GL26408-PA 4..534 2..540 921 40.6 Plus
Dper\GL16451-PA 203 GL16451-PA 1..139 427..563 333 47.1 Plus
Dper\GL16364-PA 337 GL16364-PA 106..321 232..445 293 34.1 Plus
Dper\GL16449-PA 209 GL16449-PA 120..203 193..276 272 77.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:09:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22580-PA 556 GA22580-PA 127..492 200..563 1127 63.2 Plus
Dpse\GA20313-PA 613 GA20313-PA 4..534 2..540 920 40.6 Plus
Dpse\GA27728-PA 337 GA27728-PA 106..321 232..445 291 34.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10058-PA 695 GM10058-PA 1..695 1..709 3233 90.4 Plus
Dsec\GM11619-PA 605 GM11619-PA 4..506 2..510 1006 44 Plus
Dsec\GM17938-PA 608 GM17938-PA 145..524 79..470 526 34.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22247-PA 605 GD22247-PA 4..506 2..510 999 43.8 Plus
Dsim\GD24426-PA 171 GD24426-PA 1..171 539..709 766 87.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:09:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18929-PA 700 GJ18929-PA 1..700 1..709 1529 50.8 Plus
Dvir\GJ16264-PA 596 GJ16264-PA 88..507 92..510 989 47 Plus
Dvir\GJ17939-PA 402 GJ17939-PA 1..140 342..471 246 41.4 Plus
Dvir\GJ17938-PA 334 GJ17938-PA 207..313 208..314 229 40.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:09:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19837-PA 775 GK19837-PA 1..765 1..706 1807 52.4 Plus
Dwil\GK15562-PA 593 GK15562-PA 38..523 69..540 998 41.3 Plus
Dwil\GK24010-PA 317 GK24010-PA 140..311 102..288 266 32.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:09:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15263-PA 695 GE15263-PA 1..695 1..709 3000 81.7 Plus
Dyak\GE13550-PA 608 GE13550-PA 4..507 2..510 1009 43.1 Plus