Clone AT15560 Report

Search the DGRC for AT15560

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:155
Well:60
Vector:pOTB7
Associated Gene/TranscriptCG33233-RC
Protein status:AT15560.pep: gold
Preliminary Size:2176
Sequenced Size:1655

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG33233 2003-02-13 Blastp of sequenced clone
CG33233 2008-04-29 Release 5.5 accounting
CG33233 2008-08-15 Release 5.9 accounting
CG33233 2008-12-18 5.12 accounting

Clone Sequence Records

AT15560.complete Sequence

1655 bp (1655 high quality bases) assembled on 2003-02-13

GenBank Submission: BT003805

> AT15560.complete
GAATGTTCTTGTTGATTTGGCAAGGATAGTTAACTAAATTTTAAAGATGC
CGGCGATGGATGTGGACACTGCTCTCTTAACCATAGGTTATGGGCTTGGT
CAGGTGATCATTTTCATGGTGAGTTTCTTCATATACATGTACTCCGTAAC
TGAGTCCATGACTGCTGGCTATCTCGTGGTCCTGACCTCCTGCGAGTTCG
ATACCTCGCCTAAAGAGAAGACCCTATTGGCCAATTCCCTGCTGGGCGGG
ATGGTGGCTTCCGGATTGTTCATTGGCTTCCTGGCGGACAGGTATGGCCG
CAAGTTCGTTATCCGATTGGCACTCGTAGGAGCGCTGTCCTTCTCGGTGA
TTTCTGCTTTAATGCCGGATCTCTATTCGCTTTCTGTGATTCGGATTATT
GTTGGAACTTTCCTCTCGGCGGTTGCATCTTTGCAGGTAGGATTCCTCGG
GGAGTTCCACGCAATCAAGTGGCGGCCAATAACGGTAGCCATTTGTAGCC
AATCTCAGGGTCTAGCTCTCATCTACTGTCCACTGGTGGCCATGGCTATT
CTGCCCAACAACTTCAATGTGGACCTCAGCAGCAGCTACAATCTACGCGT
ATGGCGATTCCTAATGATGTTCTTCATGATTCCCGGCTGGTTGGCCCTCG
TCGGAATTTGTCTGGTGCCGGAGACACCACATTTTCTCATGTCTGTCAAT
CGGCCGGACAAGGCCCTCCTGGCCCTTAAATGGATATGCCGGATGAACAG
GAAGAAGTGGGAGGACGTCGACATAACTTTGAGTGAAGAGAAATCAAGCA
CAAACGATCAGGAAGGCTTCTGGAAGACTGTGTGGTACGAGTATAAGCTG
CTCTTTTCCAAACCTCACGTCTTCAAGTTTTTTATTTGTCTCTTTCTTAT
TTTTGGGATATTTTTTACATCCATTGGATTGGGCATCTGGTTTCCAGTTA
TCCGCAACATGGACAACTCTGGCTCCAACCGTTTATGCGACCTCGTCAAT
AATAATCCAACATTTATAAATCATGAAGCGGATGATACCAATGGAACGGA
TTCGGAGTCACCAAAGTGCAACGACGAGATGACCAACCTGATCGATCCGG
TCTACTACGGCTTTACCTACATTGGATGTTTTATCCTGGCCTCGGTGTTG
GTACATTGGATGACCCGGAAGTATGTAATTGCCCTGCACATCTTGATCTC
TATGATCCTGGGAATTTCGCTTAATATAATGAAGCAGCCGACAGTGGTGC
TAATCTTCTTCGTCCTAATGATGGTATTGCCTGGTGTCCTGATCCCACTG
GCCACCTCGGTACTAGTCGACTGTCTTCCCGTCAATTTGCGAGGAAAGGC
ACTCTGTATGGTGCGATCCTTGGCGCGGTTTGGTGGCGTTTTGGGTAGCA
CTATGATTGGACTCTTCATAAGGGTTACGTGTGATGTAACCTTTAACATC
TTCAATCTCTGCCTGGCAATTTGCGTCGTTTTGGCTGTCTTTCAACCCAA
GGACATAGTGACATAATGCTGTCTGATCGTCTAAATTATTATGTGTTGCA
ATGTCGATTGTTTTTGAATAAAGTTTTAAACATTAACGAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAA

AT15560.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG33233-RC 1612 CG33233-RC 25..1612 1..1588 7685 98.9 Plus
CG33233-RE 1049 CG33233-RE 498..1004 412..918 2475 99.2 Plus
CG33233.a 987 CG33233.a 516..942 492..918 2090 99.2 Plus
CG33233-RE 1049 CG33233-RE 25..435 1..411 1950 98.2 Plus
CG33233.a 987 CG33233.a 25..435 1..411 1950 98.2 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:36:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 2660258..2660808 919..1469 2680 99.1 Plus
chr3L 24539361 chr3L 2659683..2660189 412..918 2505 99.6 Plus
chr3L 24539361 chr3L 2659294..2659620 85..411 1590 99.1 Plus
chr3L 24539361 chr3L 2660868..2660990 1466..1588 600 99.2 Plus
chr3L 24539361 chr3L 2659152..2659239 1..88 410 97.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:50:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:36:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2660769..2661319 919..1469 2665 98.9 Plus
3L 28110227 3L 2660194..2660700 412..918 2475 99.2 Plus
3L 28110227 3L 2659805..2660131 85..411 1560 98.5 Plus
3L 28110227 3L 2661379..2661504 1466..1591 615 99.2 Plus
3L 28110227 3L 2659663..2659750 1..88 410 97.7 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:00:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 2660769..2661319 919..1469 2665 98.9 Plus
3L 28103327 3L 2660194..2660700 412..918 2475 99.2 Plus
3L 28103327 3L 2659805..2660131 85..411 1560 98.4 Plus
3L 28103327 3L 2661379..2661504 1466..1591 615 99.2 Plus
3L 28103327 3L 2659663..2659750 1..88 410 97.7 Plus
Blast to na_te.dros performed on 2019-03-16 00:36:10 has no hits.

AT15560.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:37:05 Download gff for AT15560.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 2659152..2659237 1..86 97 -> Plus
chr3L 2659296..2659620 87..411 99 -> Plus
chr3L 2659683..2660189 412..918 99 -> Plus
chr3L 2660258..2660808 919..1469 99 -> Plus
chr3L 2660872..2660990 1470..1588 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:07:10 Download gff for AT15560.complete
Subject Subject Range Query Range Percent Splice Strand
CG33233-RC 1..1470 47..1516 98   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:52:44 Download gff for AT15560.complete
Subject Subject Range Query Range Percent Splice Strand
CG33233-RC 1..1470 47..1516 98   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:57:17 Download gff for AT15560.complete
Subject Subject Range Query Range Percent Splice Strand
CG33233-RC 1..1470 47..1516 98   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:43:52 Download gff for AT15560.complete
Subject Subject Range Query Range Percent Splice Strand
CG33233-RC 1..1470 47..1516 98   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:06:52 Download gff for AT15560.complete
Subject Subject Range Query Range Percent Splice Strand
CG33233-RC 1..1470 47..1516 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:06:52 Download gff for AT15560.complete
Subject Subject Range Query Range Percent Splice Strand
CG33233-RC 25..1612 1..1588 98   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:52:44 Download gff for AT15560.complete
Subject Subject Range Query Range Percent Splice Strand
CG33233-RC 25..1612 1..1588 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:57:17 Download gff for AT15560.complete
Subject Subject Range Query Range Percent Splice Strand
CG33233-RC 25..1612 1..1588 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:43:52 Download gff for AT15560.complete
Subject Subject Range Query Range Percent Splice Strand
CG33233-RC 25..1612 1..1588 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:06:52 Download gff for AT15560.complete
Subject Subject Range Query Range Percent Splice Strand
CG33233-RC 25..1612 1..1588 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:37:05 Download gff for AT15560.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2659663..2659748 1..86 97 -> Plus
3L 2659807..2660131 87..411 98 -> Plus
3L 2660194..2660700 412..918 99 -> Plus
3L 2660769..2661319 919..1469 98 -> Plus
3L 2661383..2661501 1470..1588 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:37:05 Download gff for AT15560.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2659663..2659748 1..86 97 -> Plus
3L 2659807..2660131 87..411 98 -> Plus
3L 2660194..2660700 412..918 99 -> Plus
3L 2660769..2661319 919..1469 98 -> Plus
3L 2661383..2661501 1470..1588 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:37:05 Download gff for AT15560.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2659663..2659748 1..86 97 -> Plus
3L 2659807..2660131 87..411 98 -> Plus
3L 2660194..2660700 412..918 99 -> Plus
3L 2660769..2661319 919..1469 98 -> Plus
3L 2661383..2661501 1470..1588 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:57:17 Download gff for AT15560.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2659663..2659748 1..86 97 -> Plus
arm_3L 2659807..2660131 87..411 98 -> Plus
arm_3L 2660194..2660700 412..918 99 -> Plus
arm_3L 2660769..2661319 919..1469 98 -> Plus
arm_3L 2661383..2661501 1470..1588 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:14:40 Download gff for AT15560.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2659807..2660131 87..411 98 -> Plus
3L 2660194..2660700 412..918 99 -> Plus
3L 2660769..2661319 919..1469 98 -> Plus
3L 2661383..2661501 1470..1588 100   Plus
3L 2659663..2659748 1..86 97 -> Plus

AT15560.pep Sequence

Translation from 46 to 1515

> AT15560.pep
MPAMDVDTALLTIGYGLGQVIIFMVSFFIYMYSVTESMTAGYLVVLTSCE
FDTSPKEKTLLANSLLGGMVASGLFIGFLADRYGRKFVIRLALVGALSFS
VISALMPDLYSLSVIRIIVGTFLSAVASLQVGFLGEFHAIKWRPITVAIC
SQSQGLALIYCPLVAMAILPNNFNVDLSSSYNLRVWRFLMMFFMIPGWLA
LVGICLVPETPHFLMSVNRPDKALLALKWICRMNRKKWEDVDITLSEEKS
STNDQEGFWKTVWYEYKLLFSKPHVFKFFICLFLIFGIFFTSIGLGIWFP
VIRNMDNSGSNRLCDLVNNNPTFINHEADDTNGTDSESPKCNDEMTNLID
PVYYGFTYIGCFILASVLVHWMTRKYVIALHILISMILGISLNIMKQPTV
VLIFFVLMMVLPGVLIPLATSVLVDCLPVNLRGKALCMVRSLARFGGVLG
STMIGLFIRVTCDVTFNIFNLCLAICVVLAVFQPKDIVT*

AT15560.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:49:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24246-PA 486 GF24246-PA 1..484 1..485 1205 49.9 Plus
Dana\GF17899-PA 518 GF17899-PA 31..503 5..470 560 27.4 Plus
Dana\GF17900-PA 511 GF17900-PA 14..505 5..488 516 25.8 Plus
Dana\GF17930-PA 455 GF17930-PA 12..436 49..463 371 25.4 Plus
Dana\GF20430-PA 523 GF20430-PA 27..511 7..486 361 24 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:49:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14882-PA 482 GG14882-PA 1..482 1..488 2229 85.9 Plus
Dere\GG11374-PA 513 GG11374-PA 25..512 5..484 541 27 Plus
Dere\GG18441-PA 529 GG18441-PA 19..500 7..486 358 23.3 Plus
Dere\GG14884-PA 413 GG14884-PA 3..413 5..432 353 26.7 Plus
Dere\GG16821-PA 484 GG16821-PA 5..472 7..464 349 25 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:49:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18056-PA 512 GH18056-PA 27..500 5..470 606 29.4 Plus
Dgri\GH16263-PA 779 GH16263-PA 303..757 10..467 464 27.9 Plus
Dgri\GH18057-PA 360 GH18057-PA 13..332 3..311 368 28.1 Plus
Dgri\GH16263-PA 779 GH16263-PA 1..253 1..257 348 30.7 Plus
Dgri\GH24388-PA 533 GH24388-PA 23..508 7..489 313 24.9 Plus
Dgri\GH12739-PA 574 GH12739-PA 52..560 5..473 245 23 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:09:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG33233-PC 489 CG33233-PC 1..489 1..489 2536 100 Plus
CG31106-PB 513 CG31106-PB 25..512 5..484 609 27.6 Plus
CG33233-PE 151 CG33233-PE 1..128 1..128 595 96.1 Plus
CG31103-PB 506 CG31103-PB 16..501 5..484 572 26.2 Plus
CG33234-PE 473 CG33234-PE 3..459 5..478 501 28.2 Plus
CG33234-PD 475 CG33234-PD 3..456 5..475 498 27.9 Plus
CG15221-PB 545 CG15221-PB 35..515 7..485 390 23.8 Plus
CG12783-PC 465 CG12783-PC 1..456 31..480 358 23.5 Plus
CG12783-PB 465 CG12783-PB 1..456 31..480 358 23.5 Plus
CG14691-PA 522 CG14691-PA 14..516 5..486 283 22.6 Plus
CG31272-PA 563 CG31272-PA 46..555 7..484 282 21.1 Plus
CG3690-PB 558 CG3690-PB 29..550 3..484 268 20.9 Plus
CG3690-PA 558 CG3690-PA 29..550 3..484 268 20.9 Plus
CG14691-PB 510 CG14691-PB 14..504 5..486 229 22 Plus
CG14691-PC 373 CG14691-PC 14..245 5..237 203 27.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:49:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23733-PA 511 GI23733-PA 23..496 5..470 606 30.2 Plus
Dmoj\GI23734-PA 483 GI23734-PA 2..480 4..473 500 26.1 Plus
Dmoj\GI13199-PA 458 GI13199-PA 1..449 1..486 438 26.8 Plus
Dmoj\GI13198-PA 426 GI13198-PA 1..407 22..471 349 24.4 Plus
Dmoj\GI15327-PA 477 GI15327-PA 1..457 31..486 331 26.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:49:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18412-PA 474 GL18412-PA 1..474 4..485 893 39.6 Plus
Dper\GL18413-PA 408 GL18413-PA 1..403 76..483 479 30.3 Plus
Dper\GL27291-PA 497 GL27291-PA 7..477 5..465 395 24.5 Plus
Dper\GL21913-PA 374 GL21913-PA 16..345 5..322 371 27.8 Plus
Dper\GL12624-PA 522 GL12624-PA 12..517 3..487 275 23.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:49:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA29305-PA 492 GA29305-PA 25..484 2..469 882 39.7 Plus
Dpse\GA16011-PB 504 GA16011-PB 16..483 5..468 542 27.9 Plus
Dpse\GA29306-PA 464 GA29306-PA 3..454 5..486 529 29.5 Plus
Dpse\GA11809-PB 465 GA11809-PB 1..445 31..465 382 24.8 Plus
Dpse\GA29307-PA 474 GA29307-PA 1..419 14..473 367 26.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14506-PA 489 GM14506-PA 1..489 1..489 2428 94.5 Plus
Dsec\GM17817-PA 512 GM17817-PA 22..511 3..484 588 27.3 Plus
Dsec\GM13106-PA 541 GM13106-PA 31..492 7..466 364 25 Plus
Dsec\GM14507-PA 403 GM14507-PA 3..403 5..432 363 25.9 Plus
Dsec\GM15418-PA 488 GM15418-PA 5..473 7..465 332 23.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13703-PA 489 GD13703-PA 1..489 1..489 2434 94.5 Plus
Dsim\GD21186-PA 513 GD21186-PA 25..512 5..484 585 27.2 Plus
Dsim\GD17047-PA 468 GD17047-PA 8..439 57..486 345 26 Plus
Dsim\GD20276-PA 488 GD20276-PA 5..472 7..464 325 23.7 Plus
Dsim\GD21187-PA 360 GD21187-PA 16..333 5..312 320 25.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:49:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10577-PA 515 GJ10577-PA 27..514 5..484 627 30.2 Plus
Dvir\GJ11975-PA 455 GJ11975-PA 1..453 1..488 475 27.1 Plus
Dvir\GJ10580-PA 451 GJ10580-PA 13..451 3..432 446 25.6 Plus
Dvir\GJ15101-PA 464 GJ15101-PA 1..444 31..465 417 26.7 Plus
Dvir\GJ11973-PA 308 GJ11973-PA 49..307 218..485 325 29.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:49:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13894-PA 704 GK13894-PA 227..703 14..484 587 27 Plus
Dwil\GK11975-PA 485 GK11975-PA 15..480 5..484 555 27.9 Plus
Dwil\GK13895-PA 507 GK13895-PA 15..502 5..484 533 27.2 Plus
Dwil\GK12592-PA 408 GK12592-PA 1..400 69..469 439 28 Plus
Dwil\GK22833-PA 496 GK22833-PA 7..476 5..465 413 25.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:49:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20334-PA 508 GE20334-PA 1..508 1..488 2203 83.1 Plus
Dyak\GE23571-PA 513 GE23571-PA 25..512 5..484 553 27 Plus
Dyak\GE15663-PA 533 GE15663-PA 22..484 7..466 349 24.5 Plus
Dyak\GE23572-PA 360 GE23572-PA 16..342 5..318 332 25.2 Plus
Dyak\GE26138-PA 463 GE26138-PA 1..444 31..464 325 26 Plus

AT15560.hyp Sequence

Translation from 46 to 1515

> AT15560.hyp
MPAMDVDTALLTIGYGLGQVIIFMVSFFIYMYSVTESMTAGYLVVLTSCE
FDTSPKEKTLLANSLLGGMVASGLFIGFLADRYGRKFVIRLALVGALSFS
VISALMPDLYSLSVIRIIVGTFLSAVASLQVGFLGEFHAIKWRPITVAIC
SQSQGLALIYCPLVAMAILPNNFNVDLSSSYNLRVWRFLMMFFMIPGWLA
LVGICLVPETPHFLMSVNRPDKALLALKWICRMNRKKWEDVDITLSEEKS
STNDQEGFWKTVWYEYKLLFSKPHVFKFFICLFLIFGIFFTSIGLGIWFP
VIRNMDNSGSNRLCDLVNNNPTFINHEADDTNGTDSESPKCNDEMTNLID
PVYYGFTYIGCFILASVLVHWMTRKYVIALHILISMILGISLNIMKQPTV
VLIFFVLMMVLPGVLIPLATSVLVDCLPVNLRGKALCMVRSLARFGGVLG
STMIGLFIRVTCDVTFNIFNLCLAICVVLAVFQPKDIVT*

AT15560.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 05:58:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG33233-PC 489 CG33233-PC 1..489 1..489 2536 100 Plus
CG31106-PB 513 CG31106-PB 25..512 5..484 609 27.6 Plus
CG33233-PE 151 CG33233-PE 1..128 1..128 595 96.1 Plus
CG31103-PB 506 CG31103-PB 16..501 5..484 572 26.2 Plus
CG33234-PE 473 CG33234-PE 3..459 5..478 501 28.2 Plus