Clone AT15718 Report

Search the DGRC for AT15718

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:157
Well:18
Vector:pOTB7
Associated Gene/TranscriptCG11249-RA
Protein status:AT15718.pep: gold
Preliminary Size:2034
Sequenced Size:2133

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11249 2002-01-01 Sim4 clustering to Release 2
CG11249 2002-06-12 Blastp of sequenced clone
CG11249 2003-01-01 Sim4 clustering to Release 3
CG11249 2008-04-29 Release 5.5 accounting
CG11249 2008-08-15 Release 5.9 accounting
CG11249 2008-12-18 5.12 accounting

Clone Sequence Records

AT15718.complete Sequence

2133 bp (2133 high quality bases) assembled on 2002-06-12

GenBank Submission: AY122073

> AT15718.complete
GACAAGCACACAGTTTTTGATTAGACTCCAAAATTTTCTATCTTCCCCAG
CAATGAGCGATAATGAGGATGGTGAGGAGCGGAAGGCATCGACCTTCGAG
TCGATTATAGACAACATGTTCAGCCGGTTGCGGATCATCGCAGTGGACGT
GGAGAAATTACAGAAGGCCAAGGAGAAGTTAAATATTATGCAACGGCGGA
ACACCTTCTACCATCTTCTAGGCCAGGAGGAAGAAGTCAGCATGAACCGT
GGAAGCGAGATGGCGATTCTTCGATCCAAGTATTCCTTACATTCGGGTTT
CAATCAGAATTGCAGCTCGGCCTCGGAGGAGGAACTCGACTTCGAGGAGT
TAAGCGAGGATCCGTGCAACATATCTTTCGAGGAGGATCGCTGGCACGGT
TTCTTCAAAGACTTTCAGATCCTGACCACCCCAGTCGGCACCGATCCCAA
CGAGAACCGCAAGTGTGTGGAACTGACTTCGATGACGAACTGCGATCTCG
AGATCAAACACCATCTATTGGGCGGAGTCCGCTGCTTTATGGTCAACCTT
TTCGAGGGCACTCAGCATGACAACCAGAGCCTGATCGTAAAGCTGCGAGA
GGCGGAGATCAGTGTTTCAAAGGAGTTGGGTTTTCCCGTGACGTCTTCAG
TGATGGTGAAGATATCGCCGCGCCACCAGTTCACTGGCGGATTCAGCACT
CAGTTCCGCCAGGAGGGCAAGAAGTGCGTTGAACTTGTGCAGGGCCAGAA
GGTAATCCTGACCGTGGATCGGCAGTACTCGGATCGGAGCAACGCTGATG
TTATATATGTGAATGCCCGCTTTTTGATCGTTGATGTACACCCCTTGGAC
TTTATTCTGATTGGCGAGGACATTCAACTGATGGTGCGGAGCATCCACGC
GGACCACCTCAAGGGCTGTGTGGCCAGGGGAGGCATGCTGTATGCCCACA
TGCCTGTCTTATTCCCGGCGAGGTGTCGTCGTTTCCGGATCTCGTACGAG
GAGCTAGAGGACCTTACCTTCGCCCGAGAGGTTGGCCTGAATGTGGTAGT
ATCCCATATCGTGGGGACCCCAAAGTACGTGGACAACTTGGAGCACGCGA
TGTCCGCTATGCACTGCGATGGCATGAGACTGTACGCTAGAGTGGTGCTC
AACGAGGTCCAGGGCTGCAAAGGGGAGCTGAACTGGGCGATCAAACGCTA
CGACGGGTTCTTGGTGGAACTGGCGGAGCCGGCCACTGTTCCGGACATAA
TGCACCTGTGCCCCGACGCCGAGTGCTTTATGCAGTTGACATACGCTGCG
AAGAAACCCATTATCTTTGATCCGCGGCTTTTGGATGAGCAAAAGCTTAG
GGTGGACCCCGCGCACTACTATTACACATTCTATTATCCGGACAAGTACG
TGACCACGTGCCCGCAGCCGAAAGGTACAATCTACTTCCGCTTACTGCAA
TCCGCCATCTTCGAGCAGATCAGCCCAACGGCACTGGCCAATACTCCATA
CTGCGACCGATCTCACACTGGAGCGGATAGCTTGGCGCGTTCCGTGGTAA
CTGCCTCCATTGAAGTCCATGCGGTGGCCATCGTCGTGATCGGAGTCACC
ACGCGGATGGTGCAAAAGATCTCCCACTTTCGGCCCCACGCCCCCATTCT
CTTCGTTAGCCACATGCGCTCCGCCGAGGATTACGTTTCCATTTACCACA
ACGTGACCATGCTTCCATTCCGCACCAAGTGCATTATTGCACATAGGCGG
AACGTCTTCCTTAAGGCCATATACGCGTTGGCCTATTTGGTGAAGCGAAA
GATCGCCAAGCAGAACGATCAGGTGATCCTGGTGTACAATTACGAGGATG
GCACAAAGTTTCCTGAAAAGTACATCGTGTACAAGCTGGACAGAACTAAC
TTTGCGTCGCACATGGCGGAAATCCTGTTCCCTGTGGACCAGGACCAGAT
GCAGACCCTCAAGGAAATAGAAAAGACTTAGTTCCCAAGTGTGTGTAGAT
AGTTTATTTGCTTTGGTGAGTAATTGGAATGTTAACGCGTTGGCCTAGAA
TATACAAAACAGATACAGATAAATACATACATAAATATATAGATACACAT
TTCTACGCTGAAAAAAAAAAAAAAAAAAAAAAA

AT15718.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:53:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG11249-RA 2175 CG11249-RA 66..2175 1..2110 10505 99.8 Plus
CG11249.a 2260 CG11249.a 200..2260 50..2110 10260 99.8 Plus
CG7158-RA 5086 CG7158-RA 4955..5086 2110..1979 660 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:24:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 21661863..21663454 519..2110 7930 99.9 Plus
chr3L 24539361 chr3L 21661075..21661592 1..518 2575 99.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:50:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:24:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21672927..21674518 519..2110 7930 99.9 Plus
3L 28110227 3L 21672139..21672656 1..518 2575 99.8 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:13:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 21666027..21667618 519..2110 7930 99.8 Plus
3L 28103327 3L 21665239..21665756 1..518 2575 99.8 Plus
Blast to na_te.dros performed 2019-03-15 23:24:07
Subject Length Description Subject Range Query Range Score Percent Strand
3S18 6126 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). 5214..5265 317..269 117 75 Minus

AT15718.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:24:48 Download gff for AT15718.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 21661075..21661592 1..518 99 -> Plus
chr3L 21661863..21663454 519..2110 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:07:30 Download gff for AT15718.complete
Subject Subject Range Query Range Percent Splice Strand
CG11249-RA 1..1929 53..1981 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:50:59 Download gff for AT15718.complete
Subject Subject Range Query Range Percent Splice Strand
CG11249-RA 1..1929 53..1981 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:40:49 Download gff for AT15718.complete
Subject Subject Range Query Range Percent Splice Strand
CG11249-RA 1..1929 53..1981 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:33:13 Download gff for AT15718.complete
Subject Subject Range Query Range Percent Splice Strand
CG11249-RA 1..1929 53..1981 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:33:08 Download gff for AT15718.complete
Subject Subject Range Query Range Percent Splice Strand
CG11249-RA 1..1929 53..1981 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:02:04 Download gff for AT15718.complete
Subject Subject Range Query Range Percent Splice Strand
CG11249-RA 1..2110 1..2110 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:50:59 Download gff for AT15718.complete
Subject Subject Range Query Range Percent Splice Strand
CG11249-RA 1..2110 1..2110 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:40:49 Download gff for AT15718.complete
Subject Subject Range Query Range Percent Splice Strand
CG11249-RA 1..2110 1..2110 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:33:13 Download gff for AT15718.complete
Subject Subject Range Query Range Percent Splice Strand
CG11249-RA 1..2110 1..2110 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:33:08 Download gff for AT15718.complete
Subject Subject Range Query Range Percent Splice Strand
CG11249-RA 1..2110 1..2110 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:24:48 Download gff for AT15718.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21672139..21672656 1..518 99 -> Plus
3L 21672927..21674518 519..2110 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:24:48 Download gff for AT15718.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21672139..21672656 1..518 99 -> Plus
3L 21672927..21674518 519..2110 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:24:48 Download gff for AT15718.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21672139..21672656 1..518 99 -> Plus
3L 21672927..21674518 519..2110 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:40:49 Download gff for AT15718.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21665239..21665756 1..518 99 -> Plus
arm_3L 21666027..21667618 519..2110 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:13:50 Download gff for AT15718.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21665239..21665756 1..518 99 -> Plus
3L 21666027..21667618 519..2110 99   Plus

AT15718.hyp Sequence

Translation from 1 to 1980

> AT15718.hyp
TSTQFLIRLQNFLSSPAMSDNEDGEERKASTFESIIDNMFSRLRIIAVDV
EKLQKAKEKLNIMQRRNTFYHLLGQEEEVSMNRGSEMAILRSKYSLHSGF
NQNCSSASEEELDFEELSEDPCNISFEEDRWHGFFKDFQILTTPVGTDPN
ENRKCVELTSMTNCDLEIKHHLLGGVRCFMVNLFEGTQHDNQSLIVKLRE
AEISVSKELGFPVTSSVMVKISPRHQFTGGFSTQFRQEGKKCVELVQGQK
VILTVDRQYSDRSNADVIYVNARFLIVDVHPLDFILIGEDIQLMVRSIHA
DHLKGCVARGGMLYAHMPVLFPARCRRFRISYEELEDLTFAREVGLNVVV
SHIVGTPKYVDNLEHAMSAMHCDGMRLYARVVLNEVQGCKGELNWAIKRY
DGFLVELAEPATVPDIMHLCPDAECFMQLTYAAKKPIIFDPRLLDEQKLR
VDPAHYYYTFYYPDKYVTTCPQPKGTIYFRLLQSAIFEQISPTALANTPY
CDRSHTGADSLARSVVTASIEVHAVAIVVIGVTTRMVQKISHFRPHAPIL
FVSHMRSAEDYVSIYHNVTMLPFRTKCIIAHRRNVFLKAIYALAYLVKRK
IAKQNDQVILVYNYEDGTKFPEKYIVYKLDRTNFASHMAEILFPVDQDQM
QTLKEIEKT*

AT15718.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 05:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG11249-PA 642 CG11249-PA 1..642 18..659 3350 100 Plus

AT15718.pep Sequence

Translation from 52 to 1980

> AT15718.pep
MSDNEDGEERKASTFESIIDNMFSRLRIIAVDVEKLQKAKEKLNIMQRRN
TFYHLLGQEEEVSMNRGSEMAILRSKYSLHSGFNQNCSSASEEELDFEEL
SEDPCNISFEEDRWHGFFKDFQILTTPVGTDPNENRKCVELTSMTNCDLE
IKHHLLGGVRCFMVNLFEGTQHDNQSLIVKLREAEISVSKELGFPVTSSV
MVKISPRHQFTGGFSTQFRQEGKKCVELVQGQKVILTVDRQYSDRSNADV
IYVNARFLIVDVHPLDFILIGEDIQLMVRSIHADHLKGCVARGGMLYAHM
PVLFPARCRRFRISYEELEDLTFAREVGLNVVVSHIVGTPKYVDNLEHAM
SAMHCDGMRLYARVVLNEVQGCKGELNWAIKRYDGFLVELAEPATVPDIM
HLCPDAECFMQLTYAAKKPIIFDPRLLDEQKLRVDPAHYYYTFYYPDKYV
TTCPQPKGTIYFRLLQSAIFEQISPTALANTPYCDRSHTGADSLARSVVT
ASIEVHAVAIVVIGVTTRMVQKISHFRPHAPILFVSHMRSAEDYVSIYHN
VTMLPFRTKCIIAHRRNVFLKAIYALAYLVKRKIAKQNDQVILVYNYEDG
TKFPEKYIVYKLDRTNFASHMAEILFPVDQDQMQTLKEIEKT*

AT15718.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:57:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25162-PA 642 GF25162-PA 5..633 14..640 2336 67.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:57:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16215-PA 642 GG16215-PA 1..642 1..642 3162 90.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:57:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16368-PA 648 GH16368-PA 23..630 12..626 1825 55.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG11249-PA 642 CG11249-PA 1..642 1..642 3350 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:57:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11559-PA 644 GI11559-PA 18..627 18..629 1850 54.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:57:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24854-PA 640 GL24854-PA 1..632 1..635 2086 61.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:57:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10865-PA 640 GA10865-PA 1..632 1..635 2152 61.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:57:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22397-PA 621 GM22397-PA 16..621 37..642 3177 96.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:57:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14986-PA 621 GD14986-PA 1..621 22..642 3286 97.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:57:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11239-PA 653 GJ11239-PA 17..638 3..631 1892 57.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:57:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17056-PA 631 GK17056-PA 21..624 6..610 1918 58.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:57:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19784-PA 640 GE19784-PA 1..640 1..640 3164 90.6 Plus
Dyak\GE23029-PA 640 GE23029-PA 1..640 1..640 3159 90.5 Plus