Clone AT16233 Report

Search the DGRC for AT16233

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:162
Well:33
Vector:pOTB7
Associated Gene/TranscriptCG3809-RA
Protein status:AT16233.pep: gold
Preliminary Size:1305
Sequenced Size:1445

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3809 2002-01-01 Sim4 clustering to Release 2
CG3809 2002-04-21 Blastp of sequenced clone
CG3809 2003-01-01 Sim4 clustering to Release 3
CG3809 2008-04-29 Release 5.5 accounting
CG3809 2008-08-15 Release 5.9 accounting
CG3809 2008-12-18 5.12 accounting

Clone Sequence Records

AT16233.complete Sequence

1445 bp (1445 high quality bases) assembled on 2002-04-21

GenBank Submission: AY113267

> AT16233.complete
GCGAGCTGTTCTCTTCCACTCATAAATTTTGTCACATCAATCAAATTAAA
CAGTTCGATACAGTAAAACAGCATGAACGACAAATAGGCGTAGAATCCAT
CAGGTGTAGGAGTTCTCAAGAATCGGCGAGGGTCTAATATTGGGAATGTC
CAGGCGGGTTTTTGGACTCAGTATAAAATCATTCCGATTGTTCCGAAGAA
CTCCGATCCATCCCCCAGCATTCCAGCATTTTTCTGGTGGTGTCTTTCGA
ACTTCCTTTAGGAGTTTCTGCGATTGTCAGGAACACCGAAGAATGGATCT
ACCAGAGGGAATACTTATGGGCTTTGGCAACCCCCTGCTGGACATCACCT
GCACCGTTGAGGATAATGTGATCCTGGAAAAGTACGGATTGGAAGCAAAT
GCTGCGATCATTGCTGATGAAAAGCACGATGCCCTGTTCGATGAGTTGAT
GAACATGGAAAATGTCATCTATTCGGCGGGTGGAGCCTGTCAGAACTCGA
TGCGGATCTTCCAGTGGATCGTGCAGACTCCATTTCGAGCTGTGTTCATA
GGGTCAGTGGGCAAGGATAAGCTAGGTGATCGCATCGAAAAGAGGGCCAA
ATCCGATGGCCTGCTAACACTTTATCAGCTGAAGGAAGAGCTGCCGACAG
GCTCTTGTGCTGTGATCATCAACGGTCCAAACCGCTCATTAGTGGCCAAC
TTGGGCGCTGCCTCTCTCTTCAGCGACGACTGGATTGACGAGGATGATAA
CATCTGCGCCTTGGATCGCGCCGAGTACTTCTACTTTACGGGCTTCTTTC
TGGCCGTTTGTCCACCTGCCGTGGAGCGGGTAGCTAGGATGTGCTGCGAG
ACCAATCGAATTATGATCCTCAACTTCAGCGCCGTGTTTGTGCTGCAGAT
GCAAAAGGAAGCCTTGGGCAATATCCTGCAGTACGTGGATATAATCATCT
GCAATAAGGAAGAGGCCATTGCATTTAGCGACACCAACGACTGGAAGACG
AAGAATATCTTTGAGATCGGATCTAGGCTGCAGCAAATGCCCAAGGAAAA
TACCCGACCAAGACTAGTAATGATTACGGATGCGGTGTGTCCTGTTCTCG
TCTTCCAGGATAACGATCGCGTTCTGGAATACCCTGTTCCACCCGTAAAG
CAGGGCGAGATTTTCGACACCAATGGTTGTGGCGACGCCTTCGTCGGCGG
ATTCCTGGCCATGTACGTCCAAAGGATGCCCCTGGATTACTGCATCCGAA
CGGGGATTTTCGCATCCCAGCAGGTCCTACACGTGGTCGGTGTTCAGATC
GATAAGCTGCCAAAGTTTAGCGAGAAATGCATATGAAGGGGACCGATGCA
TATTGTGTCTTTGCAAAACTTATCAAGTGACGAGTACCATTAGGACCTTA
AATAAAATTTAAAGTTTTCAATATACTAAAAAAAAAAAAAAAAAA

AT16233.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:14:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG3809-RA 1509 CG3809-RA 82..1509 1..1428 7020 99.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:02:12
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 8024076..8024855 648..1427 3840 99.5 Plus
chr3R 27901430 chr3R 8023321..8023971 1..651 3165 99.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:50:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:02:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12198694..12199474 648..1428 3890 99.9 Plus
3R 32079331 3R 12197941..12198591 1..651 3150 98.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:45:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 11939525..11940305 648..1428 3890 99.8 Plus
3R 31820162 3R 11938772..11939422 1..651 3150 98.9 Plus
Blast to na_te.dros performed on 2019-03-16 06:02:10 has no hits.

AT16233.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:02:52 Download gff for AT16233.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 8023321..8023970 1..650 99 -> Plus
chr3R 8024079..8024855 651..1427 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:08:21 Download gff for AT16233.complete
Subject Subject Range Query Range Percent Splice Strand
CG3809-RA 1..1191 146..1336 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:01:15 Download gff for AT16233.complete
Subject Subject Range Query Range Percent Splice Strand
CG3809-RA 1..1191 146..1336 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:23:51 Download gff for AT16233.complete
Subject Subject Range Query Range Percent Splice Strand
CG3809-RA 1..1191 146..1336 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:54:37 Download gff for AT16233.complete
Subject Subject Range Query Range Percent Splice Strand
CG3809-RA 1..1191 146..1336 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:13:52 Download gff for AT16233.complete
Subject Subject Range Query Range Percent Splice Strand
CG3809-RA 1..1191 146..1336 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:42:33 Download gff for AT16233.complete
Subject Subject Range Query Range Percent Splice Strand
CG3809-RA 1..1427 1..1427 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:01:15 Download gff for AT16233.complete
Subject Subject Range Query Range Percent Splice Strand
CG3809-RA 1..1427 1..1427 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:23:51 Download gff for AT16233.complete
Subject Subject Range Query Range Percent Splice Strand
CG3809-RA 1..1427 1..1427 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:54:37 Download gff for AT16233.complete
Subject Subject Range Query Range Percent Splice Strand
CG3809-RA 1..1427 1..1427 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:13:52 Download gff for AT16233.complete
Subject Subject Range Query Range Percent Splice Strand
CG3809-RA 1..1427 1..1427 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:02:52 Download gff for AT16233.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12197941..12198590 1..650 98 -> Plus
3R 12198697..12199473 651..1427 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:02:52 Download gff for AT16233.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12197941..12198590 1..650 98 -> Plus
3R 12198697..12199473 651..1427 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:02:52 Download gff for AT16233.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12197941..12198590 1..650 98 -> Plus
3R 12198697..12199473 651..1427 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:23:51 Download gff for AT16233.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8023663..8024312 1..650 98 -> Plus
arm_3R 8024419..8025195 651..1427 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:26:48 Download gff for AT16233.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11938772..11939421 1..650 98 -> Plus
3R 11939528..11940304 651..1427 99   Plus

AT16233.pep Sequence

Translation from 145 to 1335

> AT16233.pep
MSRRVFGLSIKSFRLFRRTPIHPPAFQHFSGGVFRTSFRSFCDCQEHRRM
DLPEGILMGFGNPLLDITCTVEDNVILEKYGLEANAAIIADEKHDALFDE
LMNMENVIYSAGGACQNSMRIFQWIVQTPFRAVFIGSVGKDKLGDRIEKR
AKSDGLLTLYQLKEELPTGSCAVIINGPNRSLVANLGAASLFSDDWIDED
DNICALDRAEYFYFTGFFLAVCPPAVERVARMCCETNRIMILNFSAVFVL
QMQKEALGNILQYVDIIICNKEEAIAFSDTNDWKTKNIFEIGSRLQQMPK
ENTRPRLVMITDAVCPVLVFQDNDRVLEYPVPPVKQGEIFDTNGCGDAFV
GGFLAMYVQRMPLDYCIRTGIFASQQVLHVVGVQIDKLPKFSEKCI*

AT16233.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:55:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17233-PA 347 GF17233-PA 1..347 50..396 1577 82.1 Plus
Dana\GF25174-PA 339 GF25174-PA 1..339 54..393 694 44 Plus
Dana\GF12238-PA 365 GF12238-PA 34..364 60..385 243 24.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:55:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18640-PA 397 GG18640-PA 1..397 1..396 1904 90.5 Plus
Dere\GG13787-PA 345 GG13787-PA 5..345 52..393 687 43.4 Plus
Dere\GG10762-PA 366 GG10762-PA 34..362 60..382 271 24.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:55:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15477-PA 347 GH15477-PA 1..347 50..396 1310 68 Plus
Dgri\GH23323-PA 348 GH23323-PA 5..348 52..394 708 42.6 Plus
Dgri\GH20370-PA 364 GH20370-PA 34..363 60..385 235 24.3 Plus
Dgri\GH22195-PA 341 GH22195-PA 34..340 60..385 203 23.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:26:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG3809-PA 396 CG3809-PA 1..396 1..396 2083 100 Plus
AdenoK-PC 345 CG11255-PC 5..345 52..393 710 44 Plus
AdenoK-PA 345 CG11255-PA 5..345 52..393 710 44 Plus
AdenoK-PB 345 CG11255-PB 7..345 54..393 707 44 Plus
Ady43A-PA 366 CG1851-PA 34..365 60..385 272 25 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:55:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10274-PA 411 GI10274-PA 65..411 50..396 1253 64.3 Plus
Dmoj\GI13634-PA 346 GI13634-PA 5..346 52..393 726 44.2 Plus
Dmoj\GI20045-PA 365 GI20045-PA 26..364 51..385 255 23.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:55:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22267-PA 347 GL22267-PA 1..347 50..396 1292 69.5 Plus
Dper\GL24870-PA 345 GL24870-PA 5..345 52..393 710 44 Plus
Dper\GL10944-PA 368 GL10944-PA 35..365 60..385 265 24.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:55:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17700-PA 347 GA17700-PA 1..347 50..396 1299 69.5 Plus
Dpse\GA23538-PA 340 GA23538-PA 5..340 52..393 701 44 Plus
Dpse\GA14968-PA 368 GA14968-PA 35..365 60..385 268 25.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:55:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24000-PA 396 GM24000-PA 1..396 1..396 2077 98 Plus
Dsec\GM24613-PA 345 GM24613-PA 5..345 52..393 720 43.4 Plus
Dsec\GM20810-PA 366 GM20810-PA 34..365 60..385 273 25 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:55:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18802-PA 347 GD18802-PA 1..347 50..396 1835 98.8 Plus
Dsim\GD12680-PA 345 GD12680-PA 5..345 52..393 692 43.7 Plus
Dsim\GD10267-PA 343 GD10267-PA 34..342 60..385 239 25.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:55:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11082-PA 347 GJ11082-PA 1..347 50..396 1299 68.9 Plus
Dvir\GJ13971-PA 346 GJ13971-PA 5..346 52..393 730 45.1 Plus
Dvir\GJ21287-PA 367 GJ21287-PA 35..363 60..382 292 25.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11532-PA 354 GK11532-PA 1..320 50..369 1197 65.9 Plus
Dwil\GK17347-PA 345 GK17347-PA 5..345 52..393 693 42.6 Plus
Dwil\GK21524-PA 367 GK21524-PA 34..361 60..382 231 25.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26161-PA 347 GE26161-PA 1..347 50..396 1764 94.2 Plus
Dyak\GE20080-PA 345 GE20080-PA 5..345 52..393 695 43.7 Plus
Dyak\GE24147-PA 366 GE24147-PA 34..362 60..382 273 25.2 Plus

AT16233.hyp Sequence

Translation from 145 to 1335

> AT16233.hyp
MSRRVFGLSIKSFRLFRRTPIHPPAFQHFSGGVFRTSFRSFCDCQEHRRM
DLPEGILMGFGNPLLDITCTVEDNVILEKYGLEANAAIIADEKHDALFDE
LMNMENVIYSAGGACQNSMRIFQWIVQTPFRAVFIGSVGKDKLGDRIEKR
AKSDGLLTLYQLKEELPTGSCAVIINGPNRSLVANLGAASLFSDDWIDED
DNICALDRAEYFYFTGFFLAVCPPAVERVARMCCETNRIMILNFSAVFVL
QMQKEALGNILQYVDIIICNKEEAIAFSDTNDWKTKNIFEIGSRLQQMPK
ENTRPRLVMITDAVCPVLVFQDNDRVLEYPVPPVKQGEIFDTNGCGDAFV
GGFLAMYVQRMPLDYCIRTGIFASQQVLHVVGVQIDKLPKFSEKCI*

AT16233.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 05:59:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG3809-PA 396 CG3809-PA 1..396 1..396 2083 100 Plus
AdenoK-PC 345 CG11255-PC 5..345 52..393 710 44 Plus
AdenoK-PA 345 CG11255-PA 5..345 52..393 710 44 Plus
AdenoK-PB 345 CG11255-PB 7..345 54..393 707 44 Plus
Ady43A-PA 366 CG1851-PA 34..365 60..385 272 25 Plus