Clone AT16234 Report

Search the DGRC for AT16234

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:162
Well:34
Vector:pOTB7
Associated Gene/TranscriptCG2291-RA
Protein status:AT16234.pep: gold
Preliminary Size:464
Sequenced Size:786

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2291 2002-01-01 Sim4 clustering to Release 2
CG2291 2002-04-26 Blastp of sequenced clone
CG2291 2003-01-01 Sim4 clustering to Release 3
CG2291 2008-04-29 Release 5.5 accounting
CG2291 2008-08-15 Release 5.9 accounting
CG2291 2008-12-18 5.12 accounting

Clone Sequence Records

AT16234.complete Sequence

786 bp (786 high quality bases) assembled on 2002-04-26

GenBank Submission: AY113268

> AT16234.complete
CCCCGTTTTACTTTTTCTACGTTCCTCCCATTTAACAGGCAAACTAATAC
AATAGACAAGTCTTAAATTTACATACTCCCTCCTTTCGGCCAATCCTTTA
AGCCAAATAAACGCTACACCACAGTACAACTGCATCCAGCTGAAGGCTAA
CCAATACCTAAGGTATCCGGACCACGAAATTACAGGCAAATCCGACTAGT
TTTATCCCCTTTCCAAATGCTGCCAGCCAATGGAAACCAATCGGCCCTAT
CCGCCTATGTCCGACTGGCGGTCCAGCAAGCCACGTCCCGAATGACTGGA
AGATTCGCCTACTCGACGCGCCGAAACCAGTGCGTTGGGGATCTGAAGAA
GATCGACGAAGTCCTGTGCCACCAGCGGGATGAACCCAATCCAGAATACC
ATCATGCTCCGCGATGCTTTGTTAAGAACTTTCATAAGTACCAGGAGCAG
GCGCAGGATCACGGAGAGGTGCAGACGACCCGCTTCCGCAATCCGCGATA
CCGCTGGGCAGACTTCCGGCGACGAATGGTTTATGGCACCTACGATATCT
AGACGGTTTCTCTTGATGCTCTCTGCAATCAATTTCCATCCGGACATGTC
TTGTACGAGTATAGTCCCCCCCAGTCTATCCATAACGAAGTATCCCAAAC
CCACATGCAAACTGTACAATAGTAAGAATTTTGAGGCCAGATAAACGGAT
CCAACTCGGTCGTCCGCTCAAATTGCAATATAATTCAGCACAGAATAAAT
CCGTTACCTCTTAAGTTTAAAAAAAAAAAAAAAAAA

AT16234.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:39:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG2291-RA 818 CG2291-RA 48..818 1..769 3740 99.2 Plus
CG2291.a 793 CG2291.a 208..754 225..769 2635 99 Plus
CG2291.a 793 CG2291.a 48..209 1..162 810 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:11:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4148142..4148911 768..1 3725 99.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:50:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:11:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8260646..8261416 769..1 3730 99.2 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:13:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 8261845..8262615 769..1 3740 99.2 Minus
Blast to na_te.dros performed on 2019-03-16 09:11:39 has no hits.

AT16234.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:12:31 Download gff for AT16234.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4148142..4148911 1..768 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:08:24 Download gff for AT16234.complete
Subject Subject Range Query Range Percent Splice Strand
CG2291-RA 1..336 217..552 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:11:31 Download gff for AT16234.complete
Subject Subject Range Query Range Percent Splice Strand
CG2291-RA 1..336 217..552 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:55:16 Download gff for AT16234.complete
Subject Subject Range Query Range Percent Splice Strand
CG2291-RA 1..336 217..552 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:02:21 Download gff for AT16234.complete
Subject Subject Range Query Range Percent Splice Strand
CG2291-RA 1..336 217..552 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:03:22 Download gff for AT16234.complete
Subject Subject Range Query Range Percent Splice Strand
CG2291-RA 1..336 217..552 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:33:16 Download gff for AT16234.complete
Subject Subject Range Query Range Percent Splice Strand
CG2291-RA 48..817 1..768 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:11:30 Download gff for AT16234.complete
Subject Subject Range Query Range Percent Splice Strand
CG2291-RA 48..817 1..768 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:55:16 Download gff for AT16234.complete
Subject Subject Range Query Range Percent Splice Strand
CG2291-RA 48..817 1..768 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:02:22 Download gff for AT16234.complete
Subject Subject Range Query Range Percent Splice Strand
CG2291-RA 48..817 1..768 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:03:22 Download gff for AT16234.complete
Subject Subject Range Query Range Percent Splice Strand
CG2291-RA 48..817 1..768 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:12:31 Download gff for AT16234.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8260647..8261416 1..768 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:12:31 Download gff for AT16234.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8260647..8261416 1..768 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:12:31 Download gff for AT16234.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8260647..8261416 1..768 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:55:16 Download gff for AT16234.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4148152..4148921 1..768 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:34:03 Download gff for AT16234.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8261846..8262615 1..768 99   Minus

AT16234.pep Sequence

Translation from 216 to 551

> AT16234.pep
MLPANGNQSALSAYVRLAVQQATSRMTGRFAYSTRRNQCVGDLKKIDEVL
CHQRDEPNPEYHHAPRCFVKNFHKYQEQAQDHGEVQTTRFRNPRYRWADF
RRRMVYGTYDI*

AT16234.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:21:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10661-PA 111 GG10661-PA 1..111 1..111 494 83.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG2291-PA 111 CG2291-PA 1..111 1..111 607 100 Plus
CG2291-PB 86 CG2291-PB 1..86 26..111 488 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:21:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20923-PA 95 GI20923-PA 2..95 23..111 199 46.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:21:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20706-PA 111 GM20706-PA 1..111 1..111 569 94.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:21:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21434-PA 111 GD21434-PA 1..111 1..111 582 95.5 Plus
Dsim\GD10176-PA 111 GD10176-PA 1..111 1..111 575 93.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:21:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20652-PA 96 GJ20652-PA 11..96 28..111 198 45.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:21:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19095-PA 114 GK19095-PA 50..114 53..111 184 58.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:21:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23188-PA 111 GE23188-PA 1..111 1..111 531 90.1 Plus

AT16234.hyp Sequence

Translation from 216 to 551

> AT16234.hyp
MLPANGNQSALSAYVRLAVQQATSRMTGRFAYSTRRNQCVGDLKKIDEVL
CHQRDEPNPEYHHAPRCFVKNFHKYQEQAQDHGEVQTTRFRNPRYRWADF
RRRMVYGTYDI*

AT16234.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 05:59:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG2291-PA 111 CG2291-PA 1..111 1..111 607 100 Plus
CG2291-PB 86 CG2291-PB 1..86 26..111 488 100 Plus