Clone AT16318 Report

Search the DGRC for AT16318

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:163
Well:18
Vector:pOTB7
Associated Gene/TranscriptGas8-RB
Protein status:AT16318.pep: gold
Preliminary Size:1402
Sequenced Size:1848

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14271 2002-01-01 Sim4 clustering to Release 2
CG14271 2002-06-04 Blastp of sequenced clone
CG14271 2003-01-01 Sim4 clustering to Release 3
Gas8 2008-04-29 Release 5.5 accounting
Gas8 2008-08-15 Release 5.9 accounting
Gas8 2008-12-18 5.12 accounting

Clone Sequence Records

AT16318.complete Sequence

1848 bp (1848 high quality bases) assembled on 2002-06-04

GenBank Submission: AY118453

> AT16318.complete
CAAATTTTGAATTTTGCCAGTTCAAAACCATTTGTCCCTGCCGTAGAAAT
ATAATTGAGAGAAGACTGAACCGAAAAAACAACGCTTCAACCTTTAACCT
CTTCTTTCGGTTGCCCGGAGACACACACACACACACACACGAATACACGA
GACACCCACAACACACACATTGGCAACTGCTTTATCGATAAGTTTGTTTG
GTTGTTGGACCGTAGAACGCCAATAGCTCAGTTGGCAGGAAAGACCAAGC
CGAAGTGGTTCTTATTCTTAGCAGAGGAATCGAAGCAGAGGAAGAAGCAC
CGGCAGCAGTATGCCGCCTAAAGGGAAAAAGGGCAAAAAAGGCAAAAAAT
TGCCAGTGCTCATCGATGGCGTGGACACCTCGGCGATGACTCGCGACCAG
CTGGAGGCATTTGCCCTCCGGCTAAAAGCGGAAATGGATCGTGAGCGGGA
GGAGCGTAACTACTTCCAGTTGGAGCGGGACAAGATTCGCACTTTCTGGG
AGATCACGCGCCAGCAGCTGGATGAGACCCGCTACGAGCTGCAGCAGAAG
GACAAGGAGATCGAGGCCACGCAGGATCTGGCGGATATCGATACCAAGCA
TGTGATGCAGCAGATGAAGCATCTGCAGTTTGAGAACCACAATAGGCTCG
GTGAGGTTCGGGCTGAGGCGATGACCCAACTAAAGCTGGCGCAGGAGCAC
CATGTTCTGCAGGAAAACGAGCTTCAGCGGGACAAGCGACAGTTGCGCCG
AATGCTGCGCGAAAGAATGGAGATGAGCGAGATGCAGCTGCGCCAAATGG
AGGCTCACTTCAATGAGAAACTGCTAGAGCAGCGCATCACCTTCGAACGC
GAGCGCAAGGACAACGAGATGCTGCACGAGGAGAAAATGATCGAGCAGAA
GGCCAAGCTAGACCTTTTCTACGGCACACAAATGTTCGAGGTAGAGGAGC
GAAAGAACCAGCAGATAAAGGACCTACAGGACCACCATGACCTAGCCTTT
AACGATATGAAGAACTATTACAACGATATCACGCTTAACAACCTGGCGCT
AATTGGCAGCATGAAGGAGCAGCTAGAGCATCTGCGCAAGCAGGCCGAGA
GATCCGATAGAATCGCCGCGGACACGGCAGCTGAGAATCGGCGACTGAAG
GAGCCTTTGGAGCATGCCAATATCCAGTTGAACGAGTATCGCCGCAAACT
GGAGTTCTACGAGCGGGATAAGCAGCAATTGAGTCGCCTCAAGACGCGCA
ACACTCGGCTGGAAAAGAAGGTGAAGGGTCTCACTTGGGAGGCGGAAACT
CTGATTCTGCGCAACGACTCGCTGGTGGCAGAACGGGAGGGCCTGAAGGA
GCGTTTCAACGACGTGATCGTCGAGCTGCAGCAGAAGACAGGACTGAAGA
ATGTCCTTCTGGAGCGCAAGATTGCCGCATTGATGCGCGAGGATGAGAAG
CGCAGCATTGTCCTACACGAAACGATTGCCACCTGCGCTCCCAATTTCGC
CGAAAAGTTAACCAGCTTGGATGAACGGGTGGGCAATATCATCGATGAGA
AGAACAAGATAATCCTTGACCTGCGCTATGAGGTAACCAAGGCGCGAAAG
GCACACGACGATCTACTGGAAACCTACGAGTGCAAGCTCAAGCAGTATGG
TGTGCCCACTGACGAGCTGGGCTTCAAGCCCATCAGGAATCGGGACCAAC
AGCAGCTGTACGTGTGCGGTCCTGCGGGAATAATCACCGAAAATAAGTAG
GTCCTGCTGAAGAAAAGTCATATTCACAAAGTCGGATTAAGAAAATATTT
CGAGGCGGGGAAGGAACTCAAAACCAGAAGAAAAAAAAAAAAAAAAAA

AT16318.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:54:58
Subject Length Description Subject Range Query Range Score Percent Strand
Gas8-RB 2297 Gas8-RB 41..1877 1..1838 8940 99.1 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:55:04
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 3384936..3385940 1830..826 5025 100 Minus
chrX 22417052 chrX 3398045..3398357 313..1 1565 100 Minus
chrX 22417052 chrX 3386016..3386320 825..521 1525 100 Minus
chrX 22417052 chrX 3386382..3386553 526..355 845 99.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:50:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:55:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3491426..3492437 1838..826 4820 98.6 Minus
X 23542271 X 3504539..3504851 313..1 1565 100 Minus
X 23542271 X 3492513..3492817 825..521 1525 100 Minus
X 23542271 X 3492879..3493050 526..355 830 98.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:27:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 3499524..3500535 1838..826 4830 98.6 Minus
X 23527363 X 3512637..3512949 313..1 1565 100 Minus
X 23527363 X 3500611..3500915 825..521 1525 100 Minus
X 23527363 X 3500977..3501148 526..355 830 98.8 Minus
X 23527363 X 3511487..3511530 356..313 220 100 Minus
Blast to na_te.dros performed on 2019-03-16 04:55:02 has no hits.

AT16318.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:55:56 Download gff for AT16318.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 3384936..3385940 826..1830 100 <- Minus
chrX 3386016..3386319 522..825 100 <- Minus
chrX 3386387..3386551 357..521 100 <- Minus
chrX 3396895..3396937 314..356 100 <- Minus
chrX 3398045..3398357 1..313 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:14:16 Download gff for AT16318.complete
Subject Subject Range Query Range Percent Splice Strand
Gas8-RB 1..1440 311..1750 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:32:53 Download gff for AT16318.complete
Subject Subject Range Query Range Percent Splice Strand
Gas8-RB 1..1440 311..1750 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:44:51 Download gff for AT16318.complete
Subject Subject Range Query Range Percent Splice Strand
Gas8-RB 1..1440 311..1750 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:23:51 Download gff for AT16318.complete
Subject Subject Range Query Range Percent Splice Strand
Gas8-RB 1..1440 311..1750 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:53:36 Download gff for AT16318.complete
Subject Subject Range Query Range Percent Splice Strand
Gas8-RB 1..1440 311..1750 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:14:15 Download gff for AT16318.complete
Subject Subject Range Query Range Percent Splice Strand
Gas8-RB 1..1829 1..1830 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:32:53 Download gff for AT16318.complete
Subject Subject Range Query Range Percent Splice Strand
Gas8-RB 1..1829 1..1830 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:44:51 Download gff for AT16318.complete
Subject Subject Range Query Range Percent Splice Strand
Gas8-RB 1..1829 1..1830 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:23:51 Download gff for AT16318.complete
Subject Subject Range Query Range Percent Splice Strand
Gas8-RB 1..1829 1..1830 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:53:36 Download gff for AT16318.complete
Subject Subject Range Query Range Percent Splice Strand
Gas8-RB 1..1829 1..1830 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:55:56 Download gff for AT16318.complete
Subject Subject Range Query Range Percent Splice Strand
X 3491434..3492437 826..1830 98 <- Minus
X 3492513..3492816 522..825 100 <- Minus
X 3492884..3493048 357..521 99 <- Minus
X 3503389..3503431 314..356 100 <- Minus
X 3504539..3504851 1..313 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:55:56 Download gff for AT16318.complete
Subject Subject Range Query Range Percent Splice Strand
X 3491434..3492437 826..1830 98 <- Minus
X 3492513..3492816 522..825 100 <- Minus
X 3492884..3493048 357..521 99 <- Minus
X 3503389..3503431 314..356 100 <- Minus
X 3504539..3504851 1..313 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:55:56 Download gff for AT16318.complete
Subject Subject Range Query Range Percent Splice Strand
X 3491434..3492437 826..1830 98 <- Minus
X 3492513..3492816 522..825 100 <- Minus
X 3492884..3493048 357..521 99 <- Minus
X 3503389..3503431 314..356 100 <- Minus
X 3504539..3504851 1..313 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:44:51 Download gff for AT16318.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 3397422..3397464 314..356 100 <- Minus
arm_X 3398572..3398884 1..313 100   Minus
arm_X 3385467..3386470 826..1830 98 <- Minus
arm_X 3386546..3386849 522..825 100 <- Minus
arm_X 3386917..3387081 357..521 99 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:56:54 Download gff for AT16318.complete
Subject Subject Range Query Range Percent Splice Strand
X 3499532..3500535 826..1830 98 <- Minus
X 3500611..3500914 522..825 100 <- Minus
X 3500982..3501146 357..521 99 <- Minus
X 3511487..3511529 314..356 100 <- Minus
X 3512637..3512949 1..313 100   Minus

AT16318.pep Sequence

Translation from 310 to 1749

> AT16318.pep
MPPKGKKGKKGKKLPVLIDGVDTSAMTRDQLEAFALRLKAEMDREREERN
YFQLERDKIRTFWEITRQQLDETRYELQQKDKEIEATQDLADIDTKHVMQ
QMKHLQFENHNRLGEVRAEAMTQLKLAQEHHVLQENELQRDKRQLRRMLR
ERMEMSEMQLRQMEAHFNEKLLEQRITFERERKDNEMLHEEKMIEQKAKL
DLFYGTQMFEVEERKNQQIKDLQDHHDLAFNDMKNYYNDITLNNLALIGS
MKEQLEHLRKQAERSDRIAADTAAENRRLKEPLEHANIQLNEYRRKLEFY
ERDKQQLSRLKTRNTRLEKKVKGLTWEAETLILRNDSLVAEREGLKERFN
DVIVELQQKTGLKNVLLERKIAALMREDEKRSIVLHETIATCAPNFAEKL
TSLDERVGNIIDEKNKIILDLRYEVTKARKAHDDLLETYECKLKQYGVPT
DELGFKPIRNRDQQQLYVCGPAGIITENK*

AT16318.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:19:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22311-PA 483 GF22311-PA 20..483 16..479 2371 97.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:19:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18578-PA 479 GG18578-PA 1..479 1..479 2496 99.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:19:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24042-PA 503 GH24042-PA 26..503 2..479 1976 79.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:52:03
Subject Length Description Subject Range Query Range Score Percent Strand
Gas8-PD 479 CG14271-PD 1..479 1..479 2445 100 Plus
Gas8-PB 479 CG14271-PB 1..479 1..479 2445 100 Plus
Gas8-PC 454 CG14271-PC 1..454 26..479 2315 100 Plus
cana-PC 1409 CG33694-PC 945..1319 37..417 170 22.5 Plus
cana-PB 1409 CG33694-PB 945..1319 37..417 170 22.5 Plus
cana-PA 1931 CG33694-PA 1467..1841 37..417 170 22.5 Plus
CG31551-PA 1393 CG31551-PA 440..758 40..381 167 24.7 Plus
sti-PA 1854 CG10522-PA 630..1035 38..445 157 21.3 Plus
sti-PB 1858 CG10522-PB 634..1039 38..445 157 21.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:19:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14903-PA 478 GI14903-PA 13..478 14..479 1958 78.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:19:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15789-PA 479 GL15789-PA 1..479 1..479 2297 92.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:19:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12872-PA 479 GA12872-PA 1..479 1..479 2299 92.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:19:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12721-PA 479 GM12721-PA 1..479 1..479 2505 99.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:19:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16327-PA 479 GD16327-PA 1..479 1..479 2509 99.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:19:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15335-PA 479 GJ15335-PA 1..479 1..479 2020 80.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:19:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16729-PA 479 GK16729-PA 1..479 1..479 2228 89.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:19:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16889-PA 516 GE16889-PA 39..516 2..479 2498 99.6 Plus

AT16318.hyp Sequence

Translation from 310 to 1749

> AT16318.hyp
MPPKGKKGKKGKKLPVLIDGVDTSAMTRDQLEAFALRLKAEMDREREERN
YFQLERDKIRTFWEITRQQLDETRYELQQKDKEIEATQDLADIDTKHVMQ
QMKHLQFENHNRLGEVRAEAMTQLKLAQEHHVLQENELQRDKRQLRRMLR
ERMEMSEMQLRQMEAHFNEKLLEQRITFERERKDNEMLHEEKMIEQKAKL
DLFYGTQMFEVEERKNQQIKDLQDHHDLAFNDMKNYYNDITLNNLALIGS
MKEQLEHLRKQAERSDRIAADTAAENRRLKEPLEHANIQLNEYRRKLEFY
ERDKQQLSRLKTRNTRLEKKVKGLTWEAETLILRNDSLVAEREGLKERFN
DVIVELQQKTGLKNVLLERKIAALMREDEKRSIVLHETIATCAPNFAEKL
TSLDERVGNIIDEKNKIILDLRYEVTKARKAHDDLLETYECKLKQYGVPT
DELGFKPIRNRDQQQLYVCGPAGIITENK*

AT16318.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 05:59:56
Subject Length Description Subject Range Query Range Score Percent Strand
Gas8-PD 479 CG14271-PD 1..479 1..479 2445 100 Plus
Gas8-PB 479 CG14271-PB 1..479 1..479 2445 100 Plus
Gas8-PC 454 CG14271-PC 1..454 26..479 2315 100 Plus
cana-PC 1409 CG33694-PC 945..1319 37..417 170 22.5 Plus
cana-PB 1409 CG33694-PB 945..1319 37..417 170 22.5 Plus