Clone AT16588 Report

Search the DGRC for AT16588

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:165
Well:88
Vector:pOTB7
Associated Gene/TranscriptUcp4C-RA
Protein status:AT16588.pep: gold
Preliminary Size:1008
Sequenced Size:1183

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9064 2002-01-01 Sim4 clustering to Release 2
CG9064 2002-01-18 Blastp of sequenced clone
CG9064 2003-01-01 Sim4 clustering to Release 3
Ucp4C 2008-04-29 Release 5.5 accounting
Ucp4C 2008-08-15 Release 5.9 accounting
Ucp4C 2008-12-18 5.12 accounting

Clone Sequence Records

AT16588.complete Sequence

1183 bp (1183 high quality bases) assembled on 2002-01-18

GenBank Submission: AY089345

> AT16588.complete
CCTAAACACATTTCAAACAATTCTAAACAAACAATTCCAAACATACAATT
CCACTTACCACTTACCGACCAAATTACGAGTTTACAATGGACAAAGCTGA
ACGCGACTACTGGCATCTTCGATCCTTGGAAATCGAAGAGGAGCCGCGAT
TTCCGCCAACAAACGTCGCTGATCCACTAACCGCACGCAATCTGTTCCAG
CTCTACGTCAACACCTTCATTGGAGCCAATCTGGCCGAGTCGTGTGTCTT
CCCATTGGACGTGGCCAAGACCCGGATGCAGGTAGATGGCGAGCAGGCCA
AGAAGACGGGTAAAGCGATGCCAACTTTCCGGGCAACTCTTACCAACATG
ATCCGAGTGGAGGGATTCAAGTCGCTCTACGCCGGCTTCTCGGCAATGGT
GACCCGAAACTTTATCTTCAACTCGTTACGTGTTGTTCTCTACGACGTTT
TCCGGCGCCCTTTTCTCTACCAGAACGAGCGGAACGAGGAAGTGCTCAAG
ATCTACATGGCGCTGGGATGCAGCTTCACCGCAGGCTGCATTGCCCAGGC
ACTGGCCAATCCCTTTGACATCGTCAAGGTGCGAATGCAGACGGAAGGAC
GCCGCCGCCAGCTGGGCTATGATGTGCGGGTGAACAGCATGGTGCAGGCC
TTCGTGGACATCTACCGCCGTGGCGGACTGCCCAGTATGTGGAAGGGTGT
AGGGCCCAGCTGCATGCGTGCCTGCCTGATGACGACCGGCGATGTGGGCA
GCTACGATATCAGTAAGCGCACCTTCAAGCGCCTGCTGGACTTGGAGGAA
GGCCTGCCACTGCGTTTCGTGTCTTCCATGTGCGCCGGACTAACGGCATC
CGTGCTCAGCACGCCGGCGGACGTGATCAAGTCGCGGATGATGAACCAGC
CGGTGGACGAGAGCGGCAAGAATCTGTACTACAAGAACTCCCTCGACTGC
GTTAGGAAGCTGGTCAGGGAGGAGGGTGTCCTCACGTTATATAAGGGCCT
AATGCCCACTTGGTTTCGGCTGGGACCGTTCTCAGTGCTCTTTTGGCTGT
CCGTCGAGCAGCTGCGTCAGTGGGAAGGCCAGAGTGGATTTTAGGAGCAA
ACTATCAATCTTACTATCGTATTTTGTATGTCTTTTAACACGCAATAAAA
GGTGCAAGTCAAACCAAAAAAAAAAAAAAAAAA

AT16588.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:29:41
Subject Length Description Subject Range Query Range Score Percent Strand
Ucp4C-RA 1165 Ucp4C-RA 1..1165 1..1165 5825 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:49:57
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 5967648..5968812 1..1165 5825 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:51:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:49:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5968597..5969762 1..1166 5830 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:58:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5968597..5969762 1..1166 5830 100 Plus
Blast to na_te.dros performed 2019-03-16 16:49:56
Subject Length Description Subject Range Query Range Score Percent Strand
297 6995 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). 6126..6161 14..50 110 81.1 Plus

AT16588.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:50:39 Download gff for AT16588.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 5967648..5968812 1..1165 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:09:11 Download gff for AT16588.complete
Subject Subject Range Query Range Percent Splice Strand
Ucp4C-RA 1..1008 87..1094 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:47:40 Download gff for AT16588.complete
Subject Subject Range Query Range Percent Splice Strand
Ucp4C-RA 1..1008 87..1094 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:47:51 Download gff for AT16588.complete
Subject Subject Range Query Range Percent Splice Strand
Ucp4C-RA 1..1008 87..1094 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:15:25 Download gff for AT16588.complete
Subject Subject Range Query Range Percent Splice Strand
Ucp4C-RA 1..1008 87..1094 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:44:57 Download gff for AT16588.complete
Subject Subject Range Query Range Percent Splice Strand
Ucp4C-RA 1..1008 87..1094 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:11:47 Download gff for AT16588.complete
Subject Subject Range Query Range Percent Splice Strand
Ucp4C-RA 1..1165 1..1165 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:47:39 Download gff for AT16588.complete
Subject Subject Range Query Range Percent Splice Strand
Ucp4C-RA 1..1165 1..1165 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:47:51 Download gff for AT16588.complete
Subject Subject Range Query Range Percent Splice Strand
Ucp4C-RA 32..1196 1..1165 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:15:25 Download gff for AT16588.complete
Subject Subject Range Query Range Percent Splice Strand
Ucp4C-RA 1..1165 1..1165 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:44:57 Download gff for AT16588.complete
Subject Subject Range Query Range Percent Splice Strand
Ucp4C-RA 32..1196 1..1165 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:50:39 Download gff for AT16588.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5968597..5969761 1..1165 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:50:39 Download gff for AT16588.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5968597..5969761 1..1165 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:50:39 Download gff for AT16588.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5968597..5969761 1..1165 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:47:51 Download gff for AT16588.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5968597..5969761 1..1165 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:49:13 Download gff for AT16588.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5968597..5969761 1..1165 100   Plus

AT16588.hyp Sequence

Translation from 86 to 1093

> AT16588.hyp
MDKAERDYWHLRSLEIEEEPRFPPTNVADPLTARNLFQLYVNTFIGANLA
ESCVFPLDVAKTRMQVDGEQAKKTGKAMPTFRATLTNMIRVEGFKSLYAG
FSAMVTRNFIFNSLRVVLYDVFRRPFLYQNERNEEVLKIYMALGCSFTAG
CIAQALANPFDIVKVRMQTEGRRRQLGYDVRVNSMVQAFVDIYRRGGLPS
MWKGVGPSCMRACLMTTGDVGSYDISKRTFKRLLDLEEGLPLRFVSSMCA
GLTASVLSTPADVIKSRMMNQPVDESGKNLYYKNSLDCVRKLVREEGVLT
LYKGLMPTWFRLGPFSVLFWLSVEQLRQWEGQSGF*

AT16588.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
Ucp4C-PA 335 CG9064-PA 1..335 1..335 1747 100 Plus
Ucp4B-PA 337 CG18340-PA 38..337 38..335 651 41.3 Plus
Ucp4A-PB 340 CG6492-PB 44..340 40..335 621 40 Plus
Ucp4A-PA 340 CG6492-PA 44..340 40..335 621 40 Plus
Bmcp-PB 303 CG7314-PB 20..303 50..329 399 31.5 Plus

AT16588.pep Sequence

Translation from 86 to 1093

> AT16588.pep
MDKAERDYWHLRSLEIEEEPRFPPTNVADPLTARNLFQLYVNTFIGANLA
ESCVFPLDVAKTRMQVDGEQAKKTGKAMPTFRATLTNMIRVEGFKSLYAG
FSAMVTRNFIFNSLRVVLYDVFRRPFLYQNERNEEVLKIYMALGCSFTAG
CIAQALANPFDIVKVRMQTEGRRRQLGYDVRVNSMVQAFVDIYRRGGLPS
MWKGVGPSCMRACLMTTGDVGSYDISKRTFKRLLDLEEGLPLRFVSSMCA
GLTASVLSTPADVIKSRMMNQPVDESGKNLYYKNSLDCVRKLVREEGVLT
LYKGLMPTWFRLGPFSVLFWLSVEQLRQWEGQSGF*

AT16588.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:29:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15593-PA 335 GF15593-PA 1..335 1..335 1347 72.5 Plus
Dana\GF15592-PA 357 GF15592-PA 56..357 38..335 652 40.1 Plus
Dana\GF21108-PA 359 GF21108-PA 56..359 40..335 616 38.3 Plus
Dana\GF15828-PA 335 GF15828-PA 30..329 34..331 521 36.3 Plus
Dana\GF25285-PA 303 GF25285-PA 20..303 50..329 392 31.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:29:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25108-PA 335 GG25108-PA 1..335 1..335 1673 91.9 Plus
Dere\GG25109-PA 337 GG25109-PA 38..337 38..335 668 41.7 Plus
Dere\GG19134-PA 340 GG19134-PA 7..340 17..335 649 37.4 Plus
Dere\GG15525-PA 303 GG15525-PA 20..303 50..329 391 32 Plus
Dere\GG20428-PA 307 GG20428-PA 22..293 56..326 362 29.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:29:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11017-PA 333 GH11017-PA 1..333 1..335 1118 63 Plus
Dgri\GH11016-PA 333 GH11016-PA 33..333 38..335 695 43.2 Plus
Dgri\GH23855-PA 333 GH23855-PA 33..333 38..335 694 43.2 Plus
Dgri\GH24385-PA 362 GH24385-PA 74..362 51..335 597 38.4 Plus
Dgri\GH15075-PA 305 GH15075-PA 20..305 50..329 385 31.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:12:46
Subject Length Description Subject Range Query Range Score Percent Strand
Ucp4C-PA 335 CG9064-PA 1..335 1..335 1747 100 Plus
Ucp4B-PA 337 CG18340-PA 38..337 38..335 651 41.3 Plus
Ucp4A-PB 340 CG6492-PB 44..340 40..335 621 40 Plus
Ucp4A-PA 340 CG6492-PA 44..340 40..335 621 40 Plus
Bmcp-PB 303 CG7314-PB 20..303 50..329 399 31.5 Plus
Bmcp-PA 303 CG7314-PA 20..303 50..329 399 31.5 Plus
CG18324-PB 307 CG18324-PB 22..293 56..326 343 29.5 Plus
CG18327-PB 304 CG18327-PB 22..293 56..326 331 31 Plus
CG18327-PA 304 CG18327-PA 22..293 56..326 331 31 Plus
Ucp4B-PB 222 CG18340-PB 38..221 38..219 316 35.3 Plus
CG1907-PA 317 CG1907-PA 31..302 50..328 315 30.4 Plus
Ucp4B-PC 228 CG18340-PC 38..218 38..216 309 35.4 Plus
CG8323-PA 303 CG8323-PA 22..293 56..326 306 29.1 Plus
CG7514-PA 301 CG7514-PA 13..284 37..326 304 29.1 Plus
CG18418-PA 311 CG18418-PA 27..295 49..328 290 28.5 Plus
CG18324-PA 199 CG18324-PA 8..185 150..326 273 31.5 Plus
Dic4-PC 302 CG18363-PC 37..288 54..327 263 27.3 Plus
Dic4-PA 302 CG18363-PA 37..288 54..327 263 27.3 Plus
Dic3-PA 287 CG11196-PA 19..277 47..327 245 27.1 Plus
Dic1-PC 280 CG8790-PC 26..273 56..327 228 26.5 Plus
Dic1-PA 280 CG8790-PA 26..273 56..327 228 26.5 Plus
Dic1-PB 280 CG8790-PB 26..273 56..327 228 26.5 Plus
Dic2-PC 304 CG4323-PC 24..281 45..327 204 24.7 Plus
Dic2-PA 304 CG4323-PA 24..281 45..327 204 24.7 Plus
GC2-PB 319 CG12201-PB 19..283 35..304 198 23.5 Plus
aralar1-PB 679 CG2139-PB 328..588 37..314 194 28.9 Plus
aralar1-PD 682 CG2139-PD 331..591 37..314 194 28.9 Plus
aralar1-PA 682 CG2139-PA 331..591 37..314 194 28.9 Plus
aralar1-PF 694 CG2139-PF 331..591 37..314 194 28.9 Plus
aralar1-PC 695 CG2139-PC 344..604 37..314 194 28.9 Plus
aralar1-PE 707 CG2139-PE 356..616 37..314 194 28.9 Plus
GC1-PB 321 CG18347-PB 26..288 41..304 186 24.8 Plus
GC1-PA 321 CG18347-PA 26..288 41..304 186 24.8 Plus
CG6893-PB 250 CG6893-PB 12..238 83..327 176 24.5 Plus
Ucp4B-PB 222 CG18340-PB 27..212 126..309 169 28.6 Plus
Ucp4B-PC 228 CG18340-PC 27..212 126..309 169 28.6 Plus
colt-PD 306 CG3057-PD 35..293 56..324 169 25.6 Plus
colt-PA 306 CG3057-PA 35..293 56..324 169 25.6 Plus
MME1-PA 299 CG3476-PA 15..291 41..324 168 24.2 Plus
CG7514-PA 301 CG7514-PA 22..194 149..327 166 24 Plus
sesB-PE 299 CG16944-PE 19..274 45..304 166 22.2 Plus
sesB-PB 299 CG16944-PB 19..274 45..304 166 22.2 Plus
sesB-PA 299 CG16944-PA 19..274 45..304 166 22.2 Plus
sesB-PD 312 CG16944-PD 32..287 45..304 166 22.2 Plus
sesB-PC 312 CG16944-PC 32..287 45..304 166 22.2 Plus
Tpc1-PA 332 CG6608-PA 37..329 45..328 165 22.2 Plus
Tpc1-PB 332 CG6608-PB 37..329 45..328 165 22.2 Plus
mfrn-PA 379 CG4963-PA 1..276 14..324 165 24.7 Plus
CG18418-PA 311 CG18418-PA 23..179 148..308 164 27 Plus
CG9582-PB 300 CG9582-PB 30..291 53..326 162 23.3 Plus
CG9582-PA 300 CG9582-PA 30..291 53..326 162 23.3 Plus
CG1907-PA 317 CG1907-PA 27..183 149..308 157 25.6 Plus
Ant2-PC 307 CG1683-PC 27..289 45..311 156 21.2 Plus
Ant2-PB 307 CG1683-PB 27..289 45..311 156 21.2 Plus
Ant2-PA 307 CG1683-PA 27..289 45..311 156 21.2 Plus
Tpc1-PA 332 CG6608-PA 38..222 149..329 154 23.7 Plus
Tpc1-PB 332 CG6608-PB 38..222 149..329 154 23.7 Plus
CG5254-PB 237 CG5254-PB 1..226 88..324 151 25.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:29:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17536-PA 334 GI17536-PA 1..334 1..335 1105 61.6 Plus
Dmoj\GI17535-PA 338 GI17535-PA 39..338 38..335 658 40.9 Plus
Dmoj\GI15324-PA 379 GI15324-PA 80..379 51..335 598 38 Plus
Dmoj\GI13724-PA 305 GI13724-PA 20..305 50..329 378 30.9 Plus
Dmoj\GI12576-PA 310 GI12576-PA 26..292 49..326 347 32.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:30:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19094-PA 335 GL19094-PA 1..335 1..335 1251 69 Plus
Dper\GL19096-PA 336 GL19096-PA 33..336 35..335 822 50.7 Plus
Dper\GL14753-PA 369 GL14753-PA 59..367 40..333 594 37.2 Plus
Dper\GL19095-PA 255 GL19095-PA 76..255 156..335 574 55.6 Plus
Dper\GL16987-PA 306 GL16987-PA 16..295 45..326 374 32.2 Plus
Dper\GL19095-PA 255 GL19095-PA 34..231 36..211 185 26.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:30:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21513-PA 335 GA21513-PA 1..335 1..335 1243 68.7 Plus
Dpse\GA25344-PA 337 GA25344-PA 34..337 35..335 838 51 Plus
Dpse\GA25345-PA 336 GA25345-PA 33..336 35..335 822 50.3 Plus
Dpse\GA19634-PA 367 GA19634-PA 57..365 40..333 598 37.8 Plus
Dpse\GA20254-PA 303 GA20254-PA 20..303 50..329 406 32.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:30:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18585-PA 335 GM18585-PA 1..335 1..335 1759 97 Plus
Dsec\GM18586-PA 337 GM18586-PA 38..337 38..335 652 40.7 Plus
Dsec\GM25293-PA 303 GM25293-PA 20..303 50..329 390 31.1 Plus
Dsec\GM21513-PA 304 GM21513-PA 22..293 56..326 356 31.4 Plus
Dsec\GM22858-PA 267 GM22858-PA 44..235 40..234 351 37.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:30:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23373-PA 335 GD23373-PA 1..335 1..335 1772 97.6 Plus
Dsim\GD23374-PA 336 GD23374-PA 37..336 38..335 665 41.3 Plus
Dsim\GD14942-PA 160 GD14942-PA 1..160 176..335 394 43.1 Plus
Dsim\GD14324-PA 303 GD14324-PA 20..303 50..329 390 31.1 Plus
Dsim\GD11025-PA 307 GD11025-PA 22..293 56..326 364 29.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:30:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15433-PA 334 GJ15433-PA 1..334 1..335 1140 63.9 Plus
Dvir\GJ15435-PA 330 GJ15435-PA 17..330 24..335 876 50.6 Plus
Dvir\GJ15429-PA 332 GJ15429-PA 34..332 38..335 685 42 Plus
Dvir\GJ17214-PA 328 GJ17214-PA 18..328 25..335 645 41.5 Plus
Dvir\GJ14761-PA 379 GJ14761-PA 73..379 40..335 627 39 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:30:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14710-PA 365 GK14710-PA 30..365 1..335 1066 59.6 Plus
Dwil\GK16380-PA 359 GK16380-PA 60..359 40..335 637 38.9 Plus
Dwil\GK10490-PA 304 GK10490-PA 20..304 50..329 393 30.9 Plus
Dwil\GK22044-PA 306 GK22044-PA 25..296 56..326 337 30.2 Plus
Dwil\GK11904-PA 326 GK11904-PA 39..310 50..328 335 31.8 Plus
Dwil\GK11904-PA 326 GK11904-PA 35..194 149..311 158 28.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:30:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25767-PA 335 GE25767-PA 1..335 1..335 1664 91.6 Plus
Dyak\GE25777-PA 338 GE25777-PA 37..338 37..335 672 41.7 Plus
Dyak\GE17690-PA 340 GE17690-PA 44..340 40..335 640 40 Plus
Dyak\GE21842-PA 303 GE21842-PA 20..303 50..329 388 31 Plus
Dyak\GE13558-PA 304 GE13558-PA 22..293 56..326 360 31.3 Plus