Clone AT16669 Report

Search the DGRC for AT16669

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:166
Well:69
Vector:pOTB7
Associated Gene/TranscriptCG9570-RA
Protein status:AT16669.pep: gold
Preliminary Size:659
Sequenced Size:1275

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9570 2002-01-01 Sim4 clustering to Release 2
CG9570 2002-01-18 Blastp of sequenced clone
CG9570 2003-01-01 Sim4 clustering to Release 3
CG9570 2008-04-29 Release 5.5 accounting
CG9570 2008-08-15 Release 5.9 accounting
CG9570 2008-12-18 5.12 accounting

Clone Sequence Records

AT16669.complete Sequence

1275 bp (1275 high quality bases) assembled on 2002-01-18

GenBank Submission: AY089347

> AT16669.complete
CCTCGTGCCGCTTACATAAGCAAATCACAACGATTCGTTGAAGCTAGCAC
ACACACACACATCCCTCTTTCGGCCTGTTACAAAATTTTTAATTTTACAA
AATCGTAAAATAAATCGAGGAAAGTTGAAAAATTAAAAGTGCCCAATACA
CCCAGCATAACCAATCGCCACGATGACCTGCACATTGGTACTCCTGATTG
CCAGCGTTCTGCACTTCCGAATGCGTGGCAGTTGTCTGCTGGACATAGAG
CGTTTCCCGGTAATTCCCGGCACCATCTACGCCGGCCACATTGCCTACTG
CGCCATCCTATACTTCCTGCACGACCTGGAGATCCTGCCCACGCGCTATC
GTAGCCGGATGGGCTGGCTGACCACCTTCCTGATCGAACTGGTGTTGGGC
GTGGCCTTCATGGAGGTCCTGGCCCTGTGGCTCTGGTGCAGCGTGGAGCA
CATCCTCCACCTGTCCACCCAGTTCGTGCTGCGCCGCTATCTGGGCGTCT
CCACCGAAGTCTACCAGCGCTGGGAGTGGGCCATCATGGGTGGTCTGATG
ACCACGCTGGCAGCCATGCTCTGGATAAACGCCTTCGAGGCCACGGAGAC
AACTAAAGCAGAGAGGGTGTCGAAGGATGTCAAGGACATCCGGATGAAGG
CGGTCCTGTGCCAGCGGGAGGAGAAACAGAAGCAGGATCACGATCTGGAG
AAGATTGAGCAGCCTGCTCCAGAGCCAGAGGAGTCACAAAATCCTGATGA
AGTGCAGCTGCCGGAGAATCATCTAAAGCTGCTGGCCACCACCACTGATT
GCTAACCCCTTGTCGTCGCCTCCTGCAACTTGGGCTGCAGACAAAAAGAC
TTCGCAAAGCGGCCTCAATTAGACGAACGATCATGCCGGGACCAGACCAG
ACGAAGCAAATGTATTTATTCCAGCCAGATGGACTCGAAAGGCTCTAAAA
GACCGTGCCAAAGGATACTGGGAATGGGGAACGGGGCGAAATGATGGACT
GCAGTAAAATGTCTATGAAAATTGACTTGGTGTCCTGGCATTGAGAGGCA
GTCGGGCGGAAGGAGCTGCCAGCGCCTGGATGCGCGTCAATTGACAAATT
GTCGGCTCGACTGGCCCATTCGTCCTGGTTTTGCCTTGCTCCCCGTGCTA
GGCTTGCTCTCAACTTCACAAAACCAATACGAATGCCAAAATGCCAAAAA
TACAATCCCGGGCAATTTTAGACCCAAACAGAGCAGAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAA

AT16669.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:29:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG9570-RA 1229 CG9570-RA 1..1229 11..1239 6130 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:22:02
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 19939791..19941016 11..1236 6100 99.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:51:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:22:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20051294..20052522 11..1239 6130 99.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:58:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 20059392..20060620 11..1239 6130 99.9 Plus
Blast to na_te.dros performed on 2019-03-16 05:22:00 has no hits.

AT16669.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:22:53 Download gff for AT16669.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 19939791..19941016 11..1236 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:09:31 Download gff for AT16669.complete
Subject Subject Range Query Range Percent Splice Strand
CG9570-RA 1..633 173..805 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:47:28 Download gff for AT16669.complete
Subject Subject Range Query Range Percent Splice Strand
CG9570-RA 1..633 173..805 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:42:15 Download gff for AT16669.complete
Subject Subject Range Query Range Percent Splice Strand
CG9570-RA 1..633 173..805 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:15:18 Download gff for AT16669.complete
Subject Subject Range Query Range Percent Splice Strand
CG9570-RA 1..633 173..805 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:01:42 Download gff for AT16669.complete
Subject Subject Range Query Range Percent Splice Strand
CG9570-RA 1..633 173..805 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:11:36 Download gff for AT16669.complete
Subject Subject Range Query Range Percent Splice Strand
CG9570-RA 1..1226 11..1236 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:47:28 Download gff for AT16669.complete
Subject Subject Range Query Range Percent Splice Strand
CG9570-RA 1..1226 11..1236 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:42:15 Download gff for AT16669.complete
Subject Subject Range Query Range Percent Splice Strand
CG9570-RA 1..1226 11..1236 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:15:18 Download gff for AT16669.complete
Subject Subject Range Query Range Percent Splice Strand
CG9570-RA 1..1226 11..1236 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:01:42 Download gff for AT16669.complete
Subject Subject Range Query Range Percent Splice Strand
CG9570-RA 1..1226 11..1236 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:22:53 Download gff for AT16669.complete
Subject Subject Range Query Range Percent Splice Strand
X 20051294..20052519 11..1236 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:22:53 Download gff for AT16669.complete
Subject Subject Range Query Range Percent Splice Strand
X 20051294..20052519 11..1236 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:22:53 Download gff for AT16669.complete
Subject Subject Range Query Range Percent Splice Strand
X 20051294..20052519 11..1236 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:42:15 Download gff for AT16669.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19945327..19946552 11..1236 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:49:05 Download gff for AT16669.complete
Subject Subject Range Query Range Percent Splice Strand
X 20059392..20060617 11..1236 99   Plus

AT16669.pep Sequence

Translation from 172 to 804

> AT16669.pep
MTCTLVLLIASVLHFRMRGSCLLDIERFPVIPGTIYAGHIAYCAILYFLH
DLEILPTRYRSRMGWLTTFLIELVLGVAFMEVLALWLWCSVEHILHLSTQ
FVLRRYLGVSTEVYQRWEWAIMGGLMTTLAAMLWINAFEATETTKAERVS
KDVKDIRMKAVLCQREEKQKQDHDLEKIEQPAPEPEESQNPDEVQLPENH
LKLLATTTDC*

AT16669.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:28:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20229-PA 288 GF20229-PA 1..142 1..142 618 77.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:28:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19266-PA 205 GG19266-PA 1..205 1..210 782 77.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:16:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG9570-PA 210 CG9570-PA 1..210 1..210 1105 100 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:28:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23267-PA 218 GL23267-PA 1..200 1..201 285 33.2 Plus
Dper\GL13073-PA 193 GL13073-PA 1..192 1..186 256 32.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:28:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21883-PA 193 GA21883-PA 1..189 1..194 283 32 Plus
Dpse\GA27204-PA 228 GA27204-PA 1..195 1..193 278 31.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:28:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23003-PA 211 GM23003-PA 1..211 1..210 1030 92 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:28:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17474-PA 206 GD17474-PA 1..206 1..210 988 90.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:28:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16268-PA 272 GK16268-PA 1..194 1..195 569 55.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:28:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15885-PA 203 GE15885-PA 1..203 1..210 867 80.6 Plus

AT16669.hyp Sequence

Translation from 172 to 804

> AT16669.hyp
MTCTLVLLIASVLHFRMRGSCLLDIERFPVIPGTIYAGHIAYCAILYFLH
DLEILPTRYRSRMGWLTTFLIELVLGVAFMEVLALWLWCSVEHILHLSTQ
FVLRRYLGVSTEVYQRWEWAIMGGLMTTLAAMLWINAFEATETTKAERVS
KDVKDIRMKAVLCQREEKQKQDHDLEKIEQPAPEPEESQNPDEVQLPENH
LKLLATTTDC*

AT16669.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:00:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG9570-PA 210 CG9570-PA 1..210 1..210 1105 100 Plus