Clone AT16729 Report

Search the DGRC for AT16729

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:167
Well:29
Vector:pOTB7
Associated Gene/TranscriptCG11226-RA
Protein status:AT16729.pep: gold
Preliminary Size:618
Sequenced Size:1142

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11226 2002-01-01 Sim4 clustering to Release 2
CG11226 2002-01-18 Blastp of sequenced clone
CG11226 2003-01-01 Sim4 clustering to Release 3
CG11226 2008-04-29 Release 5.5 accounting
CG11226 2008-08-15 Release 5.9 accounting
CG11226 2008-12-18 5.12 accounting

Clone Sequence Records

AT16729.complete Sequence

1142 bp (1142 high quality bases) assembled on 2002-01-18

GenBank Submission: AY089349

> AT16729.complete
TATTTGACAACTCAGGGAGCTAGAACTTTGAATTATACAGAAAAACACGA
AACACTGTTCCAGTCAACTAGTCCGGCTATGAGAGCCTCTTTTCTGATCA
GTCGCAAGCAGCCATGGATGGGGCAGCTGCTGCTCATGGCGAGAAACAAA
GCCCTTACGCTCCTGCTGAAGCTGTATAGGCGGACTCCCATCTTCAGACC
GCGACACCTGCCAGGAAGGAATCGGACTCAGAGCGTTGGACTTGCCCGGG
ATAATACGATCATGACCTCTGCCAAAAATACGAACCCTTCCTGTCGTATT
TCCCATCTCACCATGTTTGGCGGACTCGTGCATCTGGATGTGCTAAGTGA
GGACGACTACGTCTATGAGGTCAGTGACATGGAAATCGGAGCGGACGGAG
AAATTCTTCTGGACATGGACAGTCGGCGGAGACAGGGTAACTTCGAGCTG
GCTCTAATGGCGGGCGGCCAACTGGACGTGGACTCCGAGGAAGACGAAGA
ATTCCACGAATGCGACTGCGAAGGATATGTGCGGTGCGTGGAGTACGGGG
AGTGTGAGGGGGGGAGCGATCTAGTGCGGACGGGTGGACGAATGGAGTCT
TTGAAAAAATCTCAGCTGCCTTCCGCGCCACCAGGTTCTTTCACAAAGCG
AGGCAACCTCCCCATCTAAGCCGTGAAGTATGGCAACGCCGCAATGCCGA
CAATTGGTACTCTCGTTTGGCGCCAATACTAACGACAACAATGTAAAACA
CTAGAGCACTCTGGCGAGAGGGCACGTCAAGTGCAGAGAGAGTCCGAACC
CGAGACGGAAAGGGGCGGGGGAGCCAGGGCGGTCGGAGAGTGTGCACAAA
AACATTTGCCGGCTGCTTAGTTTTTTTGCCGGCGCAAAAAGTCGAATGCG
AGCGAACGCTGAAAGCTTCCACTCTCCCTCCGCGATTTAGATTTAGATTC
AGATTCAAATTTACATTCACATTCACGTTCGCACTCAGATTCCGATTTCG
AGTTCGACCTCCCCCTCTGGCACTACGGTACCTCATCAGCGTCATCACCA
TCGCAAAGTCACACACGGCGTATACATAATCCAAATAAAAGCAAACATCA
AATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

AT16729.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:29:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG11226-RA 1103 CG11226-RA 1..1103 1..1103 5500 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:04:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 22825984..22827086 1..1103 5500 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:51:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:04:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22837068..22838171 1..1104 5505 99.9 Plus
3R 32079331 3R 18606565..18606624 1142..1083 225 91.7 Minus
2R 25286936 2R 513548..513607 1142..1083 225 91.7 Minus
3R 32079331 3R 14185519..14185574 1083..1138 190 89.3 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:58:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 22830168..22831271 1..1104 5505 99.9 Plus
3R 31820162 3R 18347396..18347455 1142..1083 225 91.6 Minus
2R 25260384 2R 513548..513607 1142..1083 225 91.6 Minus
3R 31820162 3R 13926350..13926405 1083..1139 215 94.7 Plus
3L 28103327 3L 25778395..25778446 1135..1083 195 94.3 Minus
3R 31820162 3R 158203..158259 1083..1140 190 91.3 Plus
Blast to na_te.dros performed 2019-03-16 16:04:39
Subject Length Description Subject Range Query Range Score Percent Strand
TAHRE 10463 TAHRE OSV 10463bp 1429..1468 947..986 110 75 Plus

AT16729.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:05:20 Download gff for AT16729.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 22825984..22827086 1..1103 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:09:43 Download gff for AT16729.complete
Subject Subject Range Query Range Percent Splice Strand
CG11226-RA 1..591 79..669 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:47:18 Download gff for AT16729.complete
Subject Subject Range Query Range Percent Splice Strand
CG11226-RA 1..591 79..669 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:59:13 Download gff for AT16729.complete
Subject Subject Range Query Range Percent Splice Strand
CG11226-RA 1..591 79..669 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:15:13 Download gff for AT16729.complete
Subject Subject Range Query Range Percent Splice Strand
CG11226-RA 1..591 79..669 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:18:33 Download gff for AT16729.complete
Subject Subject Range Query Range Percent Splice Strand
CG11226-RA 1..591 79..669 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:11:28 Download gff for AT16729.complete
Subject Subject Range Query Range Percent Splice Strand
CG11226-RA 1..1103 1..1103 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:47:18 Download gff for AT16729.complete
Subject Subject Range Query Range Percent Splice Strand
CG11226-RA 1..1103 1..1103 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:59:13 Download gff for AT16729.complete
Subject Subject Range Query Range Percent Splice Strand
CG11226-RA 1..1103 1..1103 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:15:13 Download gff for AT16729.complete
Subject Subject Range Query Range Percent Splice Strand
CG11226-RA 1..1103 1..1103 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:18:33 Download gff for AT16729.complete
Subject Subject Range Query Range Percent Splice Strand
CG11226-RA 1..1103 1..1103 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:05:20 Download gff for AT16729.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22837068..22838170 1..1103 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:05:20 Download gff for AT16729.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22837068..22838170 1..1103 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:05:20 Download gff for AT16729.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22837068..22838170 1..1103 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:59:13 Download gff for AT16729.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22830168..22831270 1..1103 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:48:58 Download gff for AT16729.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22830168..22831270 1..1103 99   Plus

AT16729.hyp Sequence

Translation from 1 to 668

> AT16729.hyp
YLTTQGARTLNYTEKHETLFQSTSPAMRASFLISRKQPWMGQLLLMARNK
ALTLLLKLYRRTPIFRPRHLPGRNRTQSVGLARDNTIMTSAKNTNPSCRI
SHLTMFGGLVHLDVLSEDDYVYEVSDMEIGADGEILLDMDSRRRQGNFEL
ALMAGGQLDVDSEEDEEFHECDCEGYVRCVEYGECEGGSDLVRTGGRMES
LKKSQLPSAPPGSFTKRGNLPI*

AT16729.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:00:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG11226-PA 196 CG11226-PA 1..196 27..222 1026 100 Plus

AT16729.pep Sequence

Translation from 78 to 668

> AT16729.pep
MRASFLISRKQPWMGQLLLMARNKALTLLLKLYRRTPIFRPRHLPGRNRT
QSVGLARDNTIMTSAKNTNPSCRISHLTMFGGLVHLDVLSEDDYVYEVSD
MEIGADGEILLDMDSRRRQGNFELALMAGGQLDVDSEEDEEFHECDCEGY
VRCVEYGECEGGSDLVRTGGRMESLKKSQLPSAPPGSFTKRGNLPI*

AT16729.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:26:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11000-PA 161 GF11000-PA 1..158 1..160 172 33.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:26:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16279-PA 166 GG16279-PA 1..166 1..166 702 83.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:08:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG11226-PA 196 CG11226-PA 1..196 1..196 1026 100 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:26:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22472-PA 196 GM22472-PA 1..196 1..196 820 88.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:26:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15053-PA 196 GD15053-PA 1..196 1..196 834 89.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:26:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22639-PA 199 GE22639-PA 1..177 1..175 654 83.1 Plus