Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
AT16729.complete Sequence
1142 bp (1142 high quality bases) assembled on 2002-01-18
GenBank Submission: AY089349
> AT16729.complete
TATTTGACAACTCAGGGAGCTAGAACTTTGAATTATACAGAAAAACACGA
AACACTGTTCCAGTCAACTAGTCCGGCTATGAGAGCCTCTTTTCTGATCA
GTCGCAAGCAGCCATGGATGGGGCAGCTGCTGCTCATGGCGAGAAACAAA
GCCCTTACGCTCCTGCTGAAGCTGTATAGGCGGACTCCCATCTTCAGACC
GCGACACCTGCCAGGAAGGAATCGGACTCAGAGCGTTGGACTTGCCCGGG
ATAATACGATCATGACCTCTGCCAAAAATACGAACCCTTCCTGTCGTATT
TCCCATCTCACCATGTTTGGCGGACTCGTGCATCTGGATGTGCTAAGTGA
GGACGACTACGTCTATGAGGTCAGTGACATGGAAATCGGAGCGGACGGAG
AAATTCTTCTGGACATGGACAGTCGGCGGAGACAGGGTAACTTCGAGCTG
GCTCTAATGGCGGGCGGCCAACTGGACGTGGACTCCGAGGAAGACGAAGA
ATTCCACGAATGCGACTGCGAAGGATATGTGCGGTGCGTGGAGTACGGGG
AGTGTGAGGGGGGGAGCGATCTAGTGCGGACGGGTGGACGAATGGAGTCT
TTGAAAAAATCTCAGCTGCCTTCCGCGCCACCAGGTTCTTTCACAAAGCG
AGGCAACCTCCCCATCTAAGCCGTGAAGTATGGCAACGCCGCAATGCCGA
CAATTGGTACTCTCGTTTGGCGCCAATACTAACGACAACAATGTAAAACA
CTAGAGCACTCTGGCGAGAGGGCACGTCAAGTGCAGAGAGAGTCCGAACC
CGAGACGGAAAGGGGCGGGGGAGCCAGGGCGGTCGGAGAGTGTGCACAAA
AACATTTGCCGGCTGCTTAGTTTTTTTGCCGGCGCAAAAAGTCGAATGCG
AGCGAACGCTGAAAGCTTCCACTCTCCCTCCGCGATTTAGATTTAGATTC
AGATTCAAATTTACATTCACATTCACGTTCGCACTCAGATTCCGATTTCG
AGTTCGACCTCCCCCTCTGGCACTACGGTACCTCATCAGCGTCATCACCA
TCGCAAAGTCACACACGGCGTATACATAATCCAAATAAAAGCAAACATCA
AATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AT16729.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:29:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11226-RA | 1103 | CG11226-RA | 1..1103 | 1..1103 | 5500 | 99.9 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:04:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 22825984..22827086 | 1..1103 | 5500 | 99.9 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:51:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:04:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22837068..22838171 | 1..1104 | 5505 | 99.9 | Plus |
3R | 32079331 | 3R | 18606565..18606624 | 1142..1083 | 225 | 91.7 | Minus |
2R | 25286936 | 2R | 513548..513607 | 1142..1083 | 225 | 91.7 | Minus |
3R | 32079331 | 3R | 14185519..14185574 | 1083..1138 | 190 | 89.3 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:58:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 22830168..22831271 | 1..1104 | 5505 | 99.9 | Plus |
3R | 31820162 | 3R | 18347396..18347455 | 1142..1083 | 225 | 91.6 | Minus |
2R | 25260384 | 2R | 513548..513607 | 1142..1083 | 225 | 91.6 | Minus |
3R | 31820162 | 3R | 13926350..13926405 | 1083..1139 | 215 | 94.7 | Plus |
3L | 28103327 | 3L | 25778395..25778446 | 1135..1083 | 195 | 94.3 | Minus |
3R | 31820162 | 3R | 158203..158259 | 1083..1140 | 190 | 91.3 | Plus |
Blast to na_te.dros performed 2019-03-16 16:04:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TAHRE | 10463 | TAHRE OSV 10463bp | 1429..1468 | 947..986 | 110 | 75 | Plus |
AT16729.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:05:20 Download gff for
AT16729.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 22825984..22827086 | 1..1103 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:09:43 Download gff for
AT16729.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11226-RA | 1..591 | 79..669 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:47:18 Download gff for
AT16729.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11226-RA | 1..591 | 79..669 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:59:13 Download gff for
AT16729.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11226-RA | 1..591 | 79..669 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:15:13 Download gff for
AT16729.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11226-RA | 1..591 | 79..669 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:18:33 Download gff for
AT16729.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11226-RA | 1..591 | 79..669 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:11:28 Download gff for
AT16729.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11226-RA | 1..1103 | 1..1103 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:47:18 Download gff for
AT16729.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11226-RA | 1..1103 | 1..1103 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:59:13 Download gff for
AT16729.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11226-RA | 1..1103 | 1..1103 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:15:13 Download gff for
AT16729.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11226-RA | 1..1103 | 1..1103 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:18:33 Download gff for
AT16729.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11226-RA | 1..1103 | 1..1103 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:05:20 Download gff for
AT16729.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22837068..22838170 | 1..1103 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:05:20 Download gff for
AT16729.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22837068..22838170 | 1..1103 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:05:20 Download gff for
AT16729.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22837068..22838170 | 1..1103 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:59:13 Download gff for
AT16729.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22830168..22831270 | 1..1103 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:48:58 Download gff for
AT16729.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22830168..22831270 | 1..1103 | 99 | | Plus |
AT16729.hyp Sequence
Translation from 1 to 668
> AT16729.hyp
YLTTQGARTLNYTEKHETLFQSTSPAMRASFLISRKQPWMGQLLLMARNK
ALTLLLKLYRRTPIFRPRHLPGRNRTQSVGLARDNTIMTSAKNTNPSCRI
SHLTMFGGLVHLDVLSEDDYVYEVSDMEIGADGEILLDMDSRRRQGNFEL
ALMAGGQLDVDSEEDEEFHECDCEGYVRCVEYGECEGGSDLVRTGGRMES
LKKSQLPSAPPGSFTKRGNLPI*
AT16729.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:00:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11226-PA | 196 | CG11226-PA | 1..196 | 27..222 | 1026 | 100 | Plus |
AT16729.pep Sequence
Translation from 78 to 668
> AT16729.pep
MRASFLISRKQPWMGQLLLMARNKALTLLLKLYRRTPIFRPRHLPGRNRT
QSVGLARDNTIMTSAKNTNPSCRISHLTMFGGLVHLDVLSEDDYVYEVSD
MEIGADGEILLDMDSRRRQGNFELALMAGGQLDVDSEEDEEFHECDCEGY
VRCVEYGECEGGSDLVRTGGRMESLKKSQLPSAPPGSFTKRGNLPI*
AT16729.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:26:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF11000-PA | 161 | GF11000-PA | 1..158 | 1..160 | 172 | 33.5 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:26:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG16279-PA | 166 | GG16279-PA | 1..166 | 1..166 | 702 | 83.1 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:08:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11226-PA | 196 | CG11226-PA | 1..196 | 1..196 | 1026 | 100 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:26:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM22472-PA | 196 | GM22472-PA | 1..196 | 1..196 | 820 | 88.8 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:26:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD15053-PA | 196 | GD15053-PA | 1..196 | 1..196 | 834 | 89.8 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:26:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE22639-PA | 199 | GE22639-PA | 1..177 | 1..175 | 654 | 83.1 | Plus |