Clone AT16804 Report

Search the DGRC for AT16804

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:168
Well:4
Vector:pOTB7
Associated Gene/TranscriptCG10809-RA
Protein status:AT16804.pep: gold
Sequenced Size:2048

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10809 2003-01-01 Sim4 clustering to Release 3
CG10809 2008-04-29 Release 5.5 accounting
CG10809 2008-08-15 Release 5.9 accounting
CG10809 2008-12-18 5.12 accounting

Clone Sequence Records

AT16804.complete Sequence

2048 bp (2048 high quality bases) assembled on 2005-10-06

GenBank Submission: BT023914

> AT16804.complete
AGCTAGCACACTAGACATATGTATGTATCGATAGGCCAAAACAAATACAA
ACAATACAGACGAGCCAAGAATTTTTGCTCTGCGTCCCAACACATAAAAA
TCCATAACAAAGTGAGTCAAAGTGTTTTAAAACGAGGACTACGAACGCAA
TAGATGAAGATAAACCATTGCAGATCAAGATTAATACGCTCAGGGACGGC
AGGGTCACACCAATAACGGGTGGTCAGAGTGACCAAAGTGGGCAGGAAAA
GAAGCAAAAATAAACAAACAATACAGACAGGAAAATAAGCAGCGCGTGCA
TGGGAAGAGTTTTTTCGCCTTAGGCCCAAACACTGAAACCTGGAACACAG
ACGCACTGCATCACTGGCAACGGGGCACACAATCCGATTGCGACCAAGCT
ATGGCTGCGGCCACCAACAACGATTCCTCCGGCGTGGAGTCGGCCAAGGA
GGAGGTGGAGATGTCGATGCCGCCATCGCCCATGTCGATGGCCATGGTAC
TGGCCAAATCGACACCGATGCCCATGCCCACCAGCGCCTCCAAGGGGATC
ATGATAACGCCGCCGCCACCGGCAATGCCGCCCACGCCCACATCGTCGCC
CAACACGCACGGCGAGTGGCCCCACATGAACATCAACCTCAACCTGAACA
TGAGTTCAAACCCCAGCACGAATGCATCATTCCAGCTGAGCAGAGATCGG
GGCGAGCACTTTGCCCTGCCGCATCTGCCGCCCCTGCCGCTGAATCCAAA
TGCCTCCAATGCCGAGTATCTGCCCAGCCTGATTCATCCAAGCACCCTGC
CCTCGGGTAGCAAAAGCTTCAAGATGCGGCCGCGAATGCAGCGTCTAAAG
CACTCCTACAGCTACAGCAACATAATCGTCCAGTCAAATGGCCGCAAACT
GCGCACCGCCGCCTCCACCTGCAACATCGAGCTGCTCAACCGCATCCTTG
AGGGTGGGGCCAATCCAAATGCCGCCGACGAGTACAATCGTAGTCCCCTG
CATCTGGCCGCCTGTCGTGGCTACATACCCATTGTCCAGCAGCTACTAAA
GTACGGAGCGAACCCAAATGTAGTCGACTCGCTGGGGAATACCCCACTCC
ATCTGGCTGTGATTTCGGCCAGCTCCAATAACTTCAACGTTGTGGTGGGT
GTGCTGCTCCAGGGCGGCGCCAGTGTCCACATGTACGATCGCAGCAACAA
GTCACCGCTGGAGCTCGCCGAGGCCAAGCTAAGATTGCTGCGCAATCGTT
ACGATCACCCTACGCCGGAGACGGCCAAAATCCTCGAGGACATGTGCATG
CTGACCACGCTCATCTTACGCTACATGGTAAAGCAGCAGCGCGAGCTGGA
GGATCTCTCCGCGCTGGAGAAGCGACTGCAGAACCTGAGCACCAGCGATG
ACCAAGAGCAGGTCGTATCCCAGACCGCCGATGAGCTGCTCGCCAGTGTC
GAGCGGCTATCAATCAACAACAAGTAGACGGGACGTAAACTGGACGCCAG
GGTAACCCGACCGCAGGCTGGCCCAAATTGCGTTCGATGAGTTGAGAAAA
AATTTGTTTATCGTTTCCTAATTTGGCTGCCGTTGAGCTGGAGTTGGCAT
TGTGACAAGCAGCTGGAGGAGATTGAGATCCTGCCCGATCCTAAACCCAC
AAAGCTGCCAAATGCGACCAACGCTCTCAAACACACAAGCACACACATAC
ACACCCACACACAAAAGAAAACACACATTGTTTTATGCGATCTTTTTATT
AAGTATTTCATTTAAGGCTTATTGTTTATGCAAACAATCAACAAACATGA
TTACATTTTAAGCTTTACGTTTAGCGCGCCAAAAACAAAAAGAAATCAAG
TTATGTAATAATGATGCAATCGCAACTCAAGAGGACACCTAACAATTTGC
TACATTACATTTAACTAAATGACTACATTACTTGGAAATCGTTAAGTGTC
TATTGTATACTATAACAAAAAAAAAAAACCATATGCGTGTAAACACTCTC
TGAACAATAAACGAAAAACCAAACGGCAAAAAAAAAAAAAAAAAAAAA

AT16804.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:43:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG10809-RB 2089 CG10809-RB 1..2028 1..2027 10035 99.8 Plus
CG10809-RA 2027 CG10809-RA 112..1966 174..2027 9170 99.7 Plus
CG10809-RA 2027 CG10809-RA 1..111 1..111 555 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:02:57
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 9850110..9851661 1552..1 7730 99.9 Minus
chr3L 24539361 chr3L 9849359..9849835 2027..1553 2260 98.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:51:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:02:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9858338..9859889 1552..1 7745 99.9 Minus
3L 28110227 3L 9857588..9858063 2027..1553 2270 99.4 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:04:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 9851438..9852989 1552..1 7745 99.9 Minus
3L 28103327 3L 9850688..9851163 2027..1553 2290 99.3 Minus
Blast to na_te.dros performed on 2019-03-15 19:02:56 has no hits.

AT16804.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:03:51 Download gff for AT16804.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 9849359..9849835 1553..2027 92 <- Minus
chr3L 9850110..9851661 1..1552 99   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:37:38 Download gff for AT16804.complete
Subject Subject Range Query Range Percent Splice Strand
CG10809-RB 1..1077 401..1477 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:40:18 Download gff for AT16804.complete
Subject Subject Range Query Range Percent Splice Strand
CG10809-RA 1..1077 401..1477 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:13:52 Download gff for AT16804.complete
Subject Subject Range Query Range Percent Splice Strand
CG10809-RA 1..1077 401..1477 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:08:37 Download gff for AT16804.complete
Subject Subject Range Query Range Percent Splice Strand
CG10809-RA 1..1077 401..1477 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:41:33 Download gff for AT16804.complete
Subject Subject Range Query Range Percent Splice Strand
CG10809-RA 1..63 49..111 100 == Plus
CG10809-RA 64..1911 174..2020 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:37:37 Download gff for AT16804.complete
Subject Subject Range Query Range Percent Splice Strand
CG10809-RB 1..2028 1..2027 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:40:18 Download gff for AT16804.complete
Subject Subject Range Query Range Percent Splice Strand
CG10809-RB 1..2028 1..2027 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:13:52 Download gff for AT16804.complete
Subject Subject Range Query Range Percent Splice Strand
CG10809-RA 1..63 49..111 100 == Plus
CG10809-RA 64..1911 174..2020 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:08:37 Download gff for AT16804.complete
Subject Subject Range Query Range Percent Splice Strand
CG10809-RB 1..2028 1..2027 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:03:51 Download gff for AT16804.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9857588..9858063 1553..2027 99 <- Minus
3L 9858338..9859889 1..1552 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:03:51 Download gff for AT16804.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9857588..9858063 1553..2027 99 <- Minus
3L 9858338..9859889 1..1552 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:03:51 Download gff for AT16804.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9857588..9858063 1553..2027 99 <- Minus
3L 9858338..9859889 1..1552 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:40:18 Download gff for AT16804.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9850688..9851163 1553..2027 99 <- Minus
arm_3L 9851438..9852989 1..1552 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:50:16 Download gff for AT16804.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9851438..9852989 1..1552 99   Minus
3L 9850688..9851163 1553..2027 99 <- Minus

AT16804.pep Sequence

Translation from 400 to 1476

> AT16804.pep
MAAATNNDSSGVESAKEEVEMSMPPSPMSMAMVLAKSTPMPMPTSASKGI
MITPPPPAMPPTPTSSPNTHGEWPHMNINLNLNMSSNPSTNASFQLSRDR
GEHFALPHLPPLPLNPNASNAEYLPSLIHPSTLPSGSKSFKMRPRMQRLK
HSYSYSNIIVQSNGRKLRTAASTCNIELLNRILEGGANPNAADEYNRSPL
HLAACRGYIPIVQQLLKYGANPNVVDSLGNTPLHLAVISASSNNFNVVVG
VLLQGGASVHMYDRSNKSPLELAEAKLRLLRNRYDHPTPETAKILEDMCM
LTTLILRYMVKQQRELEDLSALEKRLQNLSTSDDQEQVVSQTADELLASV
ERLSINNK*

AT16804.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:39:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24682-PA 360 GF24682-PA 1..360 1..358 1405 87.9 Plus
Dana\GF19976-PA 909 GF19976-PA 655..757 148..254 164 39.3 Plus
Dana\GF24302-PA 448 GF24302-PA 38..174 167..331 155 27.3 Plus
Dana\GF18240-PA 1178 GF18240-PA 55..168 164..278 154 39 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13999-PA 362 GG13999-PA 1..362 1..358 1839 97.5 Plus
Dere\GG16167-PA 448 GG16167-PA 38..174 167..331 163 29.7 Plus
Dere\GG12231-PA 1181 GG12231-PA 55..168 164..278 155 39 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15490-PA 371 GH15490-PA 38..371 40..358 1196 75.8 Plus
Dgri\GH23945-PA 1653 GH23945-PA 590..767 140..308 171 30.4 Plus
Dgri\GH18604-PA 1202 GH18604-PA 53..166 164..278 154 39 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:40:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG10809-PB 358 CG10809-PB 1..358 1..358 1838 100 Plus
CG10809-PA 358 CG10809-PA 1..358 1..358 1838 100 Plus
Ank-PE 1549 CG1651-PE 493..603 159..273 162 38.3 Plus
Ank-PD 1549 CG1651-PD 493..603 159..273 162 38.3 Plus
Ank-PC 1549 CG1651-PC 493..603 159..273 162 38.3 Plus
Ank-PB 1549 CG1651-PB 493..603 159..273 162 38.3 Plus
Tnks-PA 1181 CG4719-PA 640..781 130..275 157 33.3 Plus
Tnks-PB 1520 CG4719-PB 640..781 130..275 157 33.3 Plus
Ilk-PA 448 CG10504-PA 38..174 167..331 156 29.7 Plus
Tnks-PA 1181 CG4719-PA 55..168 164..278 154 39 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:39:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16766-PA 355 GI16766-PA 6..355 12..358 1219 73.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:39:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16302-PA 325 GL16302-PA 1..325 1..358 1357 80.5 Plus
Dper\GL22305-PA 1187 GL22305-PA 54..167 164..278 154 39 Plus
Dper\GL22305-PA 1187 GL22305-PA 639..781 130..276 152 32.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:39:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10573-PA 325 GA10573-PA 1..325 1..358 1364 81 Plus
Dpse\GA18382-PA 1189 GA18382-PA 54..167 164..278 154 39 Plus
Dpse\GA18382-PA 1189 GA18382-PA 639..781 130..276 152 32.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:39:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24834-PA 358 GM24834-PA 1..358 1..358 1878 100 Plus
Dsec\GM23234-PA 1543 GM23234-PA 501..603 167..273 165 41.1 Plus
Dsec\GM22350-PA 448 GM22350-PA 38..174 167..331 163 29.7 Plus
Dsec\GM10230-PA 1181 GM10230-PA 55..168 164..278 155 39 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:39:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12886-PA 338 GD12886-PA 1..338 21..358 1774 99.7 Plus
Dsim\GD14943-PA 448 GD14943-PA 38..174 167..331 163 29.7 Plus
Dsim\GD18183-PA 1181 GD18183-PA 55..168 164..278 152 38.1 Plus
Dsim\GD18183-PA 1181 GD18183-PA 640..781 130..275 150 33.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:39:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12511-PA 334 GJ12511-PA 29..334 40..358 1234 83 Plus
Dvir\GJ19213-PA 1869 GJ19213-PA 890..992 167..273 157 37.4 Plus
Dvir\GJ10205-PA 1187 GJ10205-PA 53..166 164..278 154 39 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:39:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17619-PA 318 GK17619-PA 1..318 1..358 1161 73.2 Plus
Dwil\GK14394-PA 1495 GK14394-PA 654..795 130..275 158 33.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:39:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20295-PA 362 GE20295-PA 1..362 1..358 1844 97.8 Plus
Dyak\GE14529-PA 1554 GE14529-PA 500..602 167..273 164 42.1 Plus
Dyak\GE19735-PA 448 GE19735-PA 38..174 167..331 163 29.7 Plus
Dyak\GE23057-PA 448 GE23057-PA 38..174 167..331 163 29.7 Plus
Dyak\GE10679-PA 1181 GE10679-PA 55..168 164..278 155 39 Plus

AT16804.hyp Sequence

Translation from 400 to 1476

> AT16804.hyp
MAAATNNDSSGVESAKEEVEMSMPPSPMSMAMVLAKSTPMPMPTSASKGI
MITPPPPAMPPTPTSSPNTHGEWPHMNINLNLNMSSNPSTNASFQLSRDR
GEHFALPHLPPLPLNPNASNAEYLPSLIHPSTLPSGSKSFKMRPRMQRLK
HSYSYSNIIVQSNGRKLRTAASTCNIELLNRILEGGANPNAADEYNRSPL
HLAACRGYIPIVQQLLKYGANPNVVDSLGNTPLHLAVISASSNNFNVVVG
VLLQGGASVHMYDRSNKSPLELAEAKLRLLRNRYDHPTPETAKILEDMCM
LTTLILRYMVKQQRELEDLSALEKRLQNLSTSDDQEQVVSQTADELLASV
ERLSINNK*

AT16804.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:00:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG10809-PB 358 CG10809-PB 1..358 1..358 1838 100 Plus
CG10809-PA 358 CG10809-PA 1..358 1..358 1838 100 Plus
Ank-PE 1549 CG1651-PE 493..603 159..273 162 38.3 Plus
Ank-PD 1549 CG1651-PD 493..603 159..273 162 38.3 Plus
Ank-PC 1549 CG1651-PC 493..603 159..273 162 38.3 Plus