Clone AT16873 Report

Search the DGRC for AT16873

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:168
Well:73
Vector:pOTB7
Associated Gene/TranscriptCG15035-RA
Protein status:AT16873.pep: gold
Sequenced Size:1511

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15035 2003-01-01 Sim4 clustering to Release 3
CG15035 2005-01-26 Blastp of sequenced clone
CG15035 2008-04-29 Release 5.5 accounting
CG15035 2008-08-15 Release 5.9 accounting
CG15035 2008-12-18 5.12 accounting

Clone Sequence Records

AT16873.complete Sequence

1511 bp (1511 high quality bases) assembled on 2005-01-26

GenBank Submission: BT021462

> AT16873.complete
CGTTTGAATAGCACACAATCGCGTAGATTTCGTATAACATATACACATAG
TTTTGTATAAAGGAAAGCGCAGGCTATGGATGTCGAAACAAGTCTGGATA
TCGAAGAAATGCGCCGAAGGATTCAGCAAGGCATCAACAGATGCTGTGAA
CAACTGCTTGAAATAGCCATGATTTTAACCCATAAAGGTGGTCAGGTTTT
AAACCGTTTGAAGGGAGCATCATTCCCGGAGCTCGCCCAAAATAGTGAAA
ATATCGGTAATGGTTCAATGTCCGAAAATCAGAATCAAAGGCTCGATCCC
ATGACAAGTGCACAATATACTACTTTAGGATTTGGAAACTTTGATGGCGA
GGGGGACTACTTGCGGCAGAAGAATAAAATCAACATTCAACTTCCGCGTC
TTGTGAGCGTGACTTGCGGCTTTGCCAAGGATCACATAAGATATCCGGAA
TATAATCGTGGAAAGTTTGGTGAGGATGCCTGGTTCATGTCCTCCAGTCC
ACAGGCGTGCATAATGGGCGTGGCCGATGGAGTGGGCGGTTGGCGAAATT
ATGGCGTTGATCCCGGAAAATTCAGTATGACCCTAATGCGATCCTGTGAA
CGAATGTCACATGCACCCGATTTTAAGCCGAACAGACCGGAAATACTACT
GGAACGAGCCTATTTTGATCTCCTAGACCAAAAGTGTCCCATTGTTGGCA
GCTGTACGGCGTGTATTTTAGCTCTTAAACGAGATGATAGCACCTTATAT
GCAGCAAATATCGGAGACAGTGGTTTTTTGGTGGTGCGATCTGGTAAAGT
GGTTTGCCGGTCCCAGGAGCAGCAGCATCAATTTAACACGCCCTATCAAT
TGGCATCGCCGCCTCCGGGTTATGACTTCGATGCAGTATCGGATGGGCCC
GAATCAGCGGATACCATTCAATTCCCGATGCAACTGGGCGACGTCATTCT
GCTGGCCACCGATGGGGTCTACGATAATGTACCTGAAAGCTTTCTCGTGG
AGGTCCTTACGGAAATGTCTGGCATATCGAATCCCGTACGGCTTCAAATG
GCCGCCAATACGGTGGCTTTAATGGCCCGCACGTTGAGCTTCAGTCCGAA
ACACGATTCTCCATTTAGTCAGAATGCCCGGAAACACGACATCGATGCAT
GGGGTGGAAAACCGGATGACATTACGGTCCTATTGGCCAGTGTCGTCTAG
AATAGATCGGATATCCAAGGCTATATACAATCATTGAACAGCCACTTCGT
AGCAAATTTTACTGACAAAAAAGAATTGTTCCAAAAAACTTTTCAATCAC
TTATCACTTAACACAATCACTTATAGTAGATATTCAATCATTTAAGACTC
TTTTCTTTTCAACTCTGCCATCACAAACCAATTTGTTTTGTACCTCTTTT
TGTTTCAAGTTCGGCCTACAACTATGCCAGTTATCGAACAAAATTTTTAA
AGTGTAATAAAATTTTTGTTTTACCATAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA

AT16873.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:44:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG15035-RA 1475 CG15035-RA 1..1475 1..1475 7375 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:47:37
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 7293629..7295105 1477..1 7385 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:51:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:47:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7401697..7403174 1478..1 7390 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:34:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 7409795..7411272 1478..1 7390 100 Minus
Blast to na_te.dros performed on 2019-03-15 17:47:35 has no hits.

AT16873.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:48:17 Download gff for AT16873.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 7293629..7295105 1..1477 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:10:03 Download gff for AT16873.complete
Subject Subject Range Query Range Percent Splice Strand
CG15035-RA 1..1125 76..1200 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:13:39 Download gff for AT16873.complete
Subject Subject Range Query Range Percent Splice Strand
CG15035-RA 1..1125 76..1200 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:47:34 Download gff for AT16873.complete
Subject Subject Range Query Range Percent Splice Strand
CG15035-RA 1..1125 76..1200 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:58:07 Download gff for AT16873.complete
Subject Subject Range Query Range Percent Splice Strand
CG15035-RA 1..1125 76..1200 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:47:56 Download gff for AT16873.complete
Subject Subject Range Query Range Percent Splice Strand
CG15035-RA 1..1125 76..1200 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:10:05 Download gff for AT16873.complete
Subject Subject Range Query Range Percent Splice Strand
CG15035-RA 1..1475 1..1475 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:13:39 Download gff for AT16873.complete
Subject Subject Range Query Range Percent Splice Strand
CG15035-RA 1..1477 1..1477 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:47:34 Download gff for AT16873.complete
Subject Subject Range Query Range Percent Splice Strand
CG15035-RA 1..1477 1..1477 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:58:07 Download gff for AT16873.complete
Subject Subject Range Query Range Percent Splice Strand
CG15035-RA 1..1475 1..1475 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:47:56 Download gff for AT16873.complete
Subject Subject Range Query Range Percent Splice Strand
CG15035-RA 1..1477 1..1477 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:48:17 Download gff for AT16873.complete
Subject Subject Range Query Range Percent Splice Strand
X 7401698..7403174 1..1477 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:48:17 Download gff for AT16873.complete
Subject Subject Range Query Range Percent Splice Strand
X 7401698..7403174 1..1477 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:48:17 Download gff for AT16873.complete
Subject Subject Range Query Range Percent Splice Strand
X 7401698..7403174 1..1477 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:47:34 Download gff for AT16873.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7295731..7297207 1..1477 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:33:37 Download gff for AT16873.complete
Subject Subject Range Query Range Percent Splice Strand
X 7409796..7411272 1..1477 100   Minus

AT16873.pep Sequence

Translation from 75 to 1199

> AT16873.pep
MDVETSLDIEEMRRRIQQGINRCCEQLLEIAMILTHKGGQVLNRLKGASF
PELAQNSENIGNGSMSENQNQRLDPMTSAQYTTLGFGNFDGEGDYLRQKN
KINIQLPRLVSVTCGFAKDHIRYPEYNRGKFGEDAWFMSSSPQACIMGVA
DGVGGWRNYGVDPGKFSMTLMRSCERMSHAPDFKPNRPEILLERAYFDLL
DQKCPIVGSCTACILALKRDDSTLYAANIGDSGFLVVRSGKVVCRSQEQQ
HQFNTPYQLASPPPGYDFDAVSDGPESADTIQFPMQLGDVILLATDGVYD
NVPESFLVEVLTEMSGISNPVRLQMAANTVALMARTLSFSPKHDSPFSQN
ARKHDIDAWGGKPDDITVLLASVV*

AT16873.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 15:59:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21131-PA 460 GF21131-PA 178..459 93..373 1069 68.8 Plus
Dana\GF25028-PA 324 GF25028-PA 53..322 103..373 899 60.1 Plus
Dana\GF22865-PA 332 GF22865-PA 56..325 105..373 650 49.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 15:59:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17623-PA 375 GG17623-PA 1..375 1..374 1518 77.1 Plus
Dere\GG14592-PA 321 GG14592-PA 54..319 107..373 888 59.9 Plus
Dere\GG12003-PA 317 GG12003-PA 15..312 75..373 600 43.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 15:59:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12845-PA 343 GH12845-PA 73..342 105..374 927 61.5 Plus
Dgri\GH15200-PA 311 GH15200-PA 40..309 103..373 892 59.4 Plus
Dgri\GH13984-PA 307 GH13984-PA 35..300 107..373 630 46.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:45:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG15035-PA 374 CG15035-PA 1..374 1..374 1968 100 Plus
CG12091-PB 321 CG12091-PB 54..319 107..373 860 59.9 Plus
CG12091-PA 321 CG12091-PA 54..319 107..373 860 59.9 Plus
fig-PA 314 CG7615-PA 43..309 107..373 583 46.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 15:59:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14933-PA 348 GI14933-PA 79..348 105..374 1000 65.6 Plus
Dmoj\GI16719-PA 311 GI16719-PA 36..309 99..373 885 58.9 Plus
Dmoj\GI14148-PA 311 GI14148-PA 36..309 99..373 885 58.9 Plus
Dmoj\GI22329-PA 312 GI22329-PA 35..306 106..373 607 46.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 15:59:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22485-PA 211 GL22485-PA 46..203 107..265 544 60.4 Plus
Dper\GL23811-PA 326 GL23811-PA 41..315 99..374 486 38.7 Plus
Dper\GL14622-PA 653 GL14622-PA 406..652 108..373 478 39.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 15:59:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11388-PA 313 GA11388-PA 46..311 107..373 876 59.2 Plus
Dpse\GA20482-PA 340 GA20482-PA 70..315 131..374 566 45.5 Plus
Dpse\GA28301-PA 498 GA28301-PA 250..497 108..373 452 37.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 15:59:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17470-PA 374 GM17470-PA 1..374 1..374 1661 83.7 Plus
Dsec\GM14206-PA 321 GM14206-PA 54..319 107..373 886 59.9 Plus
Dsec\GM12223-PA 314 GM12223-PA 43..309 107..373 593 46.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 15:59:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13469-PA 321 GD13469-PA 54..319 107..373 886 59.9 Plus
Dsim\GD24581-PA 197 GD24581-PA 1..193 1..193 807 78.8 Plus
Dsim\GD17671-PA 314 GD17671-PA 43..309 107..373 597 46.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 15:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18963-PA 348 GJ18963-PA 82..348 108..374 1008 66.7 Plus
Dvir\GJ12462-PA 311 GJ12462-PA 40..309 103..373 887 59 Plus
Dvir\GJ10517-PA 313 GJ10517-PA 35..307 106..373 622 47.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 15:59:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16148-PA 359 GK16148-PA 92..359 107..374 1000 66.8 Plus
Dwil\GK17200-PA 317 GK17200-PA 48..315 105..373 902 60.6 Plus
Dwil\GK19179-PA 315 GK19179-PA 42..309 107..373 638 47.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 15:59:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17524-PA 372 GE17524-PA 1..372 1..374 1471 74.7 Plus
Dyak\GE20952-PA 321 GE20952-PA 54..319 107..373 886 59.9 Plus
Dyak\GE10429-PA 320 GE10429-PA 49..315 107..373 579 46.5 Plus

AT16873.hyp Sequence

Translation from 75 to 1199

> AT16873.hyp
MDVETSLDIEEMRRRIQQGINRCCEQLLEIAMILTHKGGQVLNRLKGASF
PELAQNSENIGNGSMSENQNQRLDPMTSAQYTTLGFGNFDGEGDYLRQKN
KINIQLPRLVSVTCGFAKDHIRYPEYNRGKFGEDAWFMSSSPQACIMGVA
DGVGGWRNYGVDPGKFSMTLMRSCERMSHAPDFKPNRPEILLERAYFDLL
DQKCPIVGSCTACILALKRDDSTLYAANIGDSGFLVVRSGKVVCRSQEQQ
HQFNTPYQLASPPPGYDFDAVSDGPESADTIQFPMQLGDVILLATDGVYD
NVPESFLVEVLTEMSGISNPVRLQMAANTVALMARTLSFSPKHDSPFSQN
ARKHDIDAWGGKPDDITVLLASVV*

AT16873.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:00:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG15035-PA 374 CG15035-PA 1..374 1..374 1968 100 Plus
CG12091-PB 321 CG12091-PB 54..319 107..373 860 59.9 Plus
CG12091-PA 321 CG12091-PA 54..319 107..373 860 59.9 Plus
fig-PA 314 CG7615-PA 43..309 107..373 583 46.5 Plus