Clone AT16930 Report

Search the DGRC for AT16930

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:169
Well:30
Vector:pOTB7
Associated Gene/Transcripttws-RC
Protein status:AT16930.pep: gold
Sequenced Size:2313

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
tws-RB 2009-06-22 Replacement based on scoring

Clone Sequence Records

AT16930.complete Sequence

2313 bp assembled on 2009-09-21

GenBank Submission: BT099776.1

> AT16930.complete
TTTGCGTTGGATTTATCGCAATCCGTTAGTCACTAACCAATTTAAAAAAG
CGAGCGGAGCGTGCGGGAGTGGTTCGGTAGCCGTGTAAATAGTGCAAAAT
TCTTTCTTCCCCTCTACATGCTTAAGTCGTGCTAACACACAAAAAAATAC
ACAATTAACAAAAGAATCAAATGCATAAACAACAACGGAAAACCAAAGTG
TAATCAAACGAATTAGTGAAAAGAGCGTAGAAGAAGAAGTGTAATAATCG
CGCTCAACTTTTTGAAACTTTAAAATCGGCAGCTACAACAACAACACCAC
CCCCGTGAGAAAGAGACGGAGCTAGAGAGCGCGAGCGCAGCTCCTTTGGC
CTTCTCCTTTTGTTCTTGTTATTTTTGTTGTCGCTCCGTTTTTCGTTGCT
TCTAGTGCTGTTGTTGTTTTTTTAGCTGCGGCTCCTTAAAATCGACGCAA
ACTGTTCGGTAAAACATGGCCGGTAATGGAGAGGCGTCTTGGTGCTTCTC
ACAGATTAAAGGCGCCCTAGACGATGATGTCACGGATGCAGACATCATAT
CCTGCGTGGAATTCAATCACGATGGCGAGCTGCTGGCCACTGGTGACAAG
GGCGGTCGCGTCGTCATCTTTCAGCGTGATCCTGCCTCAAAAGCCGCCAA
TCCGCGACGCGGCGAATACAATGTCTATTCGACATTCCAATCGCACGAGC
CCGAATTCGACTACCTCAAGTCCCTGGAGATTGAGGAGAAGATAAACAAG
ATCCGGTGGCTGCAACAAAAGAATCCCGTGCACTTTCTGCTCTCGACCAA
CGACAAGACAGTCAAATTGTGGAAGGTCAGTGAGCGTGACAAGTCGTTCG
GCGGCTACAACACGAAGGAGGAGAACGGACTGATCCGGGATCCACAGAAT
GTAACGGCCCTCCGAGTGCCATCCGTGAAGCAGATACCACTGCTGGTGGA
GGCCTCCCCACGGCGCACCTTCGCCAATGCACACACCTATCACATCAATT
CAATAAGCGTTAATTCGGATCAGGAGACCTTCTTGTCGGCCGACGACCTG
CGGATCAATCTGTGGCACTTGGAGGTGGTCAACCAGAGCTACAACATTGT
CGACATCAAGCCAACCAACATGGAGGAGCTAACAGAGGTGATCACCGCGG
CCGAATTCCATCCGACCGAGTGCAATGTGTTTGTCTACTCGAGCTCTAAG
GGCACAATACGATTATGTGATATGCGTTCGGCGGCGCTATGCGACCGGCA
CAGCAAACAGTTCGAGGAGCCCGAGAATCCAACGAATCGCAGCTTTTTCA
GCGAAATAATCAGCTCCATCAGCGATGTGAAGCTAAGCAACTCGGGTCGC
TACATGATCTCCAGGGATTACTTGAGCATCAAAGTGTGGGATCTGCATAT
GGAAACAAAGCCCATTGAGACCTATCCGGTTCATGAATACCTGCGCGCCA
AGCTGTGCTCGCTGTACGAAAATGACTGCATCTTCGACAAGTTCGAGTGC
TGTTGGAACGGCAAGGACAGCTCAATAATGACCGGAAGCTACAACAACTT
CTTCCGCGTCTTCGATCGCAACTCGAAAAAGGATGTGACGCTAGAGGCGT
CCAGGGACATCATCAAACCGAAAACGGTGCTTAAGCCACGGAAAGTTTGC
ACTGGCGGCAAACGAAAGAAGGATGAGATCAGCGTGGACTGTCTAGATTT
CAACAAGAAGATCCTGCACACCGCCTGGCACCCCGAAGAAAATATCATCG
CCGTGGCTGCGACCAATAACCTCTTCATATTTCAGGATAAATTTTAGCCA
ACACTCCTCACAAGAACCACACCATACGCCACAATCACACAAGCAACTAT
ATCTACAGAAACACCAAGAACTACGATCACGCCTCATTCTTATGTTAAAT
TAATCGGTTTGTTTCAAAATAGTTTTCAAATTTCACTTGCAATCAAATTG
TTTGCCTAACACCATTACCTCAGGCCACCATTATCCCTATCCCCATCCAT
GTTCTCCTTCCCGCCCCCAAACAAATTACATCATACATAATGCCATAGCA
AAAGCTTTGTAATGTATTTCTGCGCTGTATGCGTATAACGAGAAACAATA
CCAGAAACTTAAGAGATGGAAACAAATTTTTATACATTACATTTATAAAT
AGTGAAGCGTATATTTGATTTCATGTAGCGCAATTCAAAAACCCACAATA
AGAGTAATATATTATGTTAGCTATTGATTTCGCCGAAATTTTTTGTATAA
TTAGCGCCAGCGCCGAAGTATTTGTAATAAAAGATAATAATATAAAAAAA
AAAAAAAAAAAAA

AT16930.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:48:44
Subject Length Description Subject Range Query Range Score Percent Strand
tws.o 3627 tws.o 100..2410 1..2311 11420 99.6 Plus
tws.j 3910 tws.j 100..2410 1..2311 11420 99.6 Plus
tws-RB 3402 tws-RB 100..2410 1..2311 11420 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:58:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 5953425..5954290 2293..1428 4300 99.8 Minus
chr3R 27901430 chr3R 5954401..5955210 1431..622 4050 100 Minus
chr3R 27901430 chr3R 5958984..5959360 476..100 1870 99.7 Minus
chr3R 27901430 chr3R 5955269..5955421 624..472 765 100 Minus
chr3R 27901430 chr3R 5960078..5960176 99..1 495 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:51:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:58:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10127633..10128516 2311..1428 4315 99.2 Minus
3R 32079331 3R 10128627..10129436 1431..622 4035 99.9 Minus
3R 32079331 3R 10133211..10133587 476..100 1870 99.7 Minus
3R 32079331 3R 10129495..10129647 624..472 765 100 Minus
3R 32079331 3R 10134305..10134403 99..1 495 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:45:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 9868464..9869347 2311..1428 4315 99.2 Minus
3R 31820162 3R 9869458..9870267 1431..622 4035 99.8 Minus
3R 31820162 3R 9874042..9874418 476..100 1870 99.7 Minus
3R 31820162 3R 9870326..9870478 624..472 765 100 Minus
3R 31820162 3R 9875136..9875234 99..1 495 100 Minus
Blast to na_te.dros performed 2019-03-15 14:58:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2320..2460 157..301 138 59.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2465..2513 264..312 119 71.4 Plus

AT16930.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:59:26 Download gff for AT16930.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 5953425..5954289 1429..2293 99 <- Minus
chr3R 5954404..5955207 625..1428 100 <- Minus
chr3R 5955269..5955420 473..624 100 <- Minus
chr3R 5958988..5959038 422..472 100 == Minus
chr3R 5959101..5959360 100..359 100 <- Minus
chr3R 5960078..5960176 1..99 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:54:41 Download gff for AT16930.complete
Subject Subject Range Query Range Percent Splice Strand
tws-RE 1..1332 466..1797 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:31:41 Download gff for AT16930.complete
Subject Subject Range Query Range Percent Splice Strand
tws-RE 1..1332 466..1797 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:55:13 Download gff for AT16930.complete
Subject Subject Range Query Range Percent Splice Strand
tws-RC 1..1332 466..1797 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:19:56 Download gff for AT16930.complete
Subject Subject Range Query Range Percent Splice Strand
tws-RC 1..1332 466..1797 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-09-21 15:17:11 Download gff for AT16930.complete
Subject Subject Range Query Range Percent Splice Strand
tws-RB 100..2392 1..2293 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:31:41 Download gff for AT16930.complete
Subject Subject Range Query Range Percent Splice Strand
tws-RB 100..2392 1..2293 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:55:13 Download gff for AT16930.complete
Subject Subject Range Query Range Percent Splice Strand
tws-RB 80..2372 1..2293 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:19:56 Download gff for AT16930.complete
Subject Subject Range Query Range Percent Splice Strand
tws-RB 80..2372 1..2293 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:59:26 Download gff for AT16930.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10127651..10128515 1429..2293 99 <- Minus
3R 10128630..10129433 625..1428 99 <- Minus
3R 10129495..10129646 473..624 100 <- Minus
3R 10133215..10133587 100..472 99 <- Minus
3R 10134305..10134403 1..99 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:59:26 Download gff for AT16930.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10127651..10128515 1429..2293 99 <- Minus
3R 10128630..10129433 625..1428 99 <- Minus
3R 10129495..10129646 473..624 100 <- Minus
3R 10133215..10133587 100..472 99 <- Minus
3R 10134305..10134403 1..99 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:59:26 Download gff for AT16930.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10127651..10128515 1429..2293 99 <- Minus
3R 10128630..10129433 625..1428 99 <- Minus
3R 10129495..10129646 473..624 100 <- Minus
3R 10133215..10133587 100..472 99 <- Minus
3R 10134305..10134403 1..99 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:55:13 Download gff for AT16930.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5953373..5954237 1429..2293 99 <- Minus
arm_3R 5954352..5955155 625..1428 99 <- Minus
arm_3R 5955217..5955368 473..624 100 <- Minus
arm_3R 5958937..5959309 100..472 99 <- Minus
arm_3R 5960027..5960125 1..99 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:16:26 Download gff for AT16930.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9868482..9869346 1429..2293 99 <- Minus
3R 9869461..9870264 625..1428 99 <- Minus
3R 9870326..9870477 473..624 100 <- Minus
3R 9874046..9874418 100..472 99 <- Minus
3R 9875136..9875234 1..99 100   Minus

AT16930.pep Sequence

Translation from 465 to 1796

> AT16930.pep
MAGNGEASWCFSQIKGALDDDVTDADIISCVEFNHDGELLATGDKGGRVV
IFQRDPASKAANPRRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLQ
QKNPVHFLLSTNDKTVKLWKVSERDKSFGGYNTKEENGLIRDPQNVTALR
VPSVKQIPLLVEASPRRTFANAHTYHINSISVNSDQETFLSADDLRINLW
HLEVVNQSYNIVDIKPTNMEELTEVITAAEFHPTECNVFVYSSSKGTIRL
CDMRSAALCDRHSKQFEEPENPTNRSFFSEIISSISDVKLSNSGRYMISR
DYLSIKVWDLHMETKPIETYPVHEYLRAKLCSLYENDCIFDKFECCWNGK
DSSIMTGSYNNFFRVFDRNSKKDVTLEASRDIIKPKTVLKPRKVCTGGKR
KKDEISVDCLDFNKKILHTAWHPEENIIAVAATNNLFIFQDKF*

AT16930.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:55:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18135-PA 497 GF18135-PA 57..497 3..443 2364 99.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:55:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17299-PA 499 GG17299-PA 58..499 2..443 2371 99.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:55:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13410-PA 493 GH13410-PA 53..493 3..443 2347 98.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:04
Subject Length Description Subject Range Query Range Score Percent Strand
tws-PH 443 CG6235-PH 1..443 1..443 2347 100 Plus
tws-PG 443 CG6235-PG 1..443 1..443 2347 100 Plus
tws-PC 443 CG6235-PC 1..443 1..443 2347 100 Plus
tws-PE 443 CG6235-PE 1..443 1..443 2347 100 Plus
tws-PD 443 CG6235-PD 1..443 1..443 2347 100 Plus
tws-PB 443 CG6235-PB 1..443 1..443 2347 100 Plus
tws-PI 499 CG6235-PI 58..499 2..443 2336 99.8 Plus
tws-PF 499 CG6235-PF 58..499 2..443 2336 99.8 Plus
tws-PA 499 CG6235-PA 58..499 2..443 2336 99.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:55:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22387-PA 493 GI22387-PA 53..493 3..443 2344 98.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:55:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23674-PA 498 GL23674-PA 58..498 3..443 2364 99.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:55:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19463-PB 468 GA19463-PB 26..468 1..443 2370 99.3 Plus
Dpse\GA19463-PA 498 GA19463-PA 58..498 3..443 2364 99.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:55:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26183-PA 499 GM26183-PA 58..499 2..443 2378 99.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:55:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20732-PA 499 GD20732-PA 58..499 2..443 2378 99.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:55:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24420-PA 493 GJ24420-PA 53..493 3..443 2346 98.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:55:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11431-PA 494 GK11431-PA 54..494 3..443 2349 98.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:55:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24702-PA 499 GE24702-PA 58..499 2..443 2371 99.5 Plus

AT16930.hyp Sequence

Translation from 465 to 1796

> AT16930.hyp
MAGNGEASWCFSQIKGALDDDVTDADIISCVEFNHDGELLATGDKGGRVV
IFQRDPASKAANPRRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLQ
QKNPVHFLLSTNDKTVKLWKVSERDKSFGGYNTKEENGLIRDPQNVTALR
VPSVKQIPLLVEASPRRTFANAHTYHINSISVNSDQETFLSADDLRINLW
HLEVVNQSYNIVDIKPTNMEELTEVITAAEFHPTECNVFVYSSSKGTIRL
CDMRSAALCDRHSKQFEEPENPTNRSFFSEIISSISDVKLSNSGRYMISR
DYLSIKVWDLHMETKPIETYPVHEYLRAKLCSLYENDCIFDKFECCWNGK
DSSIMTGSYNNFFRVFDRNSKKDVTLEASRDIIKPKTVLKPRKVCTGGKR
KKDEISVDCLDFNKKILHTAWHPEENIIAVAATNNLFIFQDKF*

AT16930.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:00:53
Subject Length Description Subject Range Query Range Score Percent Strand
tws-PH 443 CG6235-PH 1..443 1..443 2347 100 Plus
tws-PG 443 CG6235-PG 1..443 1..443 2347 100 Plus
tws-PC 443 CG6235-PC 1..443 1..443 2347 100 Plus
tws-PE 443 CG6235-PE 1..443 1..443 2347 100 Plus
tws-PD 443 CG6235-PD 1..443 1..443 2347 100 Plus