BDGP Sequence Production Resources |
Search the DGRC for AT16930
Library: | AT |
Tissue Source: | Drosophila melanogaster adult testes |
Created by: | Ling Hong |
Date Registered: | 2000-06-08 |
Comments: | Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7 |
Original Plate Number: | 169 |
Well: | 30 |
Vector: | pOTB7 |
Associated Gene/Transcript | tws-RC |
Protein status: | AT16930.pep: gold |
Sequenced Size: | 2313 |
Gene | Date | Evidence |
---|---|---|
tws-RB | 2009-06-22 | Replacement based on scoring |
2313 bp assembled on 2009-09-21
GenBank Submission: BT099776.1
> AT16930.complete TTTGCGTTGGATTTATCGCAATCCGTTAGTCACTAACCAATTTAAAAAAG CGAGCGGAGCGTGCGGGAGTGGTTCGGTAGCCGTGTAAATAGTGCAAAAT TCTTTCTTCCCCTCTACATGCTTAAGTCGTGCTAACACACAAAAAAATAC ACAATTAACAAAAGAATCAAATGCATAAACAACAACGGAAAACCAAAGTG TAATCAAACGAATTAGTGAAAAGAGCGTAGAAGAAGAAGTGTAATAATCG CGCTCAACTTTTTGAAACTTTAAAATCGGCAGCTACAACAACAACACCAC CCCCGTGAGAAAGAGACGGAGCTAGAGAGCGCGAGCGCAGCTCCTTTGGC CTTCTCCTTTTGTTCTTGTTATTTTTGTTGTCGCTCCGTTTTTCGTTGCT TCTAGTGCTGTTGTTGTTTTTTTAGCTGCGGCTCCTTAAAATCGACGCAA ACTGTTCGGTAAAACATGGCCGGTAATGGAGAGGCGTCTTGGTGCTTCTC ACAGATTAAAGGCGCCCTAGACGATGATGTCACGGATGCAGACATCATAT CCTGCGTGGAATTCAATCACGATGGCGAGCTGCTGGCCACTGGTGACAAG GGCGGTCGCGTCGTCATCTTTCAGCGTGATCCTGCCTCAAAAGCCGCCAA TCCGCGACGCGGCGAATACAATGTCTATTCGACATTCCAATCGCACGAGC CCGAATTCGACTACCTCAAGTCCCTGGAGATTGAGGAGAAGATAAACAAG ATCCGGTGGCTGCAACAAAAGAATCCCGTGCACTTTCTGCTCTCGACCAA CGACAAGACAGTCAAATTGTGGAAGGTCAGTGAGCGTGACAAGTCGTTCG GCGGCTACAACACGAAGGAGGAGAACGGACTGATCCGGGATCCACAGAAT GTAACGGCCCTCCGAGTGCCATCCGTGAAGCAGATACCACTGCTGGTGGA GGCCTCCCCACGGCGCACCTTCGCCAATGCACACACCTATCACATCAATT CAATAAGCGTTAATTCGGATCAGGAGACCTTCTTGTCGGCCGACGACCTG CGGATCAATCTGTGGCACTTGGAGGTGGTCAACCAGAGCTACAACATTGT CGACATCAAGCCAACCAACATGGAGGAGCTAACAGAGGTGATCACCGCGG CCGAATTCCATCCGACCGAGTGCAATGTGTTTGTCTACTCGAGCTCTAAG GGCACAATACGATTATGTGATATGCGTTCGGCGGCGCTATGCGACCGGCA CAGCAAACAGTTCGAGGAGCCCGAGAATCCAACGAATCGCAGCTTTTTCA GCGAAATAATCAGCTCCATCAGCGATGTGAAGCTAAGCAACTCGGGTCGC TACATGATCTCCAGGGATTACTTGAGCATCAAAGTGTGGGATCTGCATAT GGAAACAAAGCCCATTGAGACCTATCCGGTTCATGAATACCTGCGCGCCA AGCTGTGCTCGCTGTACGAAAATGACTGCATCTTCGACAAGTTCGAGTGC TGTTGGAACGGCAAGGACAGCTCAATAATGACCGGAAGCTACAACAACTT CTTCCGCGTCTTCGATCGCAACTCGAAAAAGGATGTGACGCTAGAGGCGT CCAGGGACATCATCAAACCGAAAACGGTGCTTAAGCCACGGAAAGTTTGC ACTGGCGGCAAACGAAAGAAGGATGAGATCAGCGTGGACTGTCTAGATTT CAACAAGAAGATCCTGCACACCGCCTGGCACCCCGAAGAAAATATCATCG CCGTGGCTGCGACCAATAACCTCTTCATATTTCAGGATAAATTTTAGCCA ACACTCCTCACAAGAACCACACCATACGCCACAATCACACAAGCAACTAT ATCTACAGAAACACCAAGAACTACGATCACGCCTCATTCTTATGTTAAAT TAATCGGTTTGTTTCAAAATAGTTTTCAAATTTCACTTGCAATCAAATTG TTTGCCTAACACCATTACCTCAGGCCACCATTATCCCTATCCCCATCCAT GTTCTCCTTCCCGCCCCCAAACAAATTACATCATACATAATGCCATAGCA AAAGCTTTGTAATGTATTTCTGCGCTGTATGCGTATAACGAGAAACAATA CCAGAAACTTAAGAGATGGAAACAAATTTTTATACATTACATTTATAAAT AGTGAAGCGTATATTTGATTTCATGTAGCGCAATTCAAAAACCCACAATA AGAGTAATATATTATGTTAGCTATTGATTTCGCCGAAATTTTTTGTATAA TTAGCGCCAGCGCCGAAGTATTTGTAATAAAAGATAATAATATAAAAAAA AAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 5953425..5954290 | 2293..1428 | 4300 | 99.8 | Minus |
chr3R | 27901430 | chr3R | 5954401..5955210 | 1431..622 | 4050 | 100 | Minus |
chr3R | 27901430 | chr3R | 5958984..5959360 | 476..100 | 1870 | 99.7 | Minus |
chr3R | 27901430 | chr3R | 5955269..5955421 | 624..472 | 765 | 100 | Minus |
chr3R | 27901430 | chr3R | 5960078..5960176 | 99..1 | 495 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 10127633..10128516 | 2311..1428 | 4315 | 99.2 | Minus |
3R | 32079331 | 3R | 10128627..10129436 | 1431..622 | 4035 | 99.9 | Minus |
3R | 32079331 | 3R | 10133211..10133587 | 476..100 | 1870 | 99.7 | Minus |
3R | 32079331 | 3R | 10129495..10129647 | 624..472 | 765 | 100 | Minus |
3R | 32079331 | 3R | 10134305..10134403 | 99..1 | 495 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 9868464..9869347 | 2311..1428 | 4315 | 99.2 | Minus |
3R | 31820162 | 3R | 9869458..9870267 | 1431..622 | 4035 | 99.8 | Minus |
3R | 31820162 | 3R | 9874042..9874418 | 476..100 | 1870 | 99.7 | Minus |
3R | 31820162 | 3R | 9870326..9870478 | 624..472 | 765 | 100 | Minus |
3R | 31820162 | 3R | 9875136..9875234 | 99..1 | 495 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 5953425..5954289 | 1429..2293 | 99 | <- | Minus |
chr3R | 5954404..5955207 | 625..1428 | 100 | <- | Minus |
chr3R | 5955269..5955420 | 473..624 | 100 | <- | Minus |
chr3R | 5958988..5959038 | 422..472 | 100 | == | Minus |
chr3R | 5959101..5959360 | 100..359 | 100 | <- | Minus |
chr3R | 5960078..5960176 | 1..99 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tws-RE | 1..1332 | 466..1797 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tws-RE | 1..1332 | 466..1797 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tws-RC | 1..1332 | 466..1797 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tws-RC | 1..1332 | 466..1797 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tws-RB | 100..2392 | 1..2293 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tws-RB | 100..2392 | 1..2293 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tws-RB | 80..2372 | 1..2293 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tws-RB | 80..2372 | 1..2293 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10127651..10128515 | 1429..2293 | 99 | <- | Minus |
3R | 10128630..10129433 | 625..1428 | 99 | <- | Minus |
3R | 10129495..10129646 | 473..624 | 100 | <- | Minus |
3R | 10133215..10133587 | 100..472 | 99 | <- | Minus |
3R | 10134305..10134403 | 1..99 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10127651..10128515 | 1429..2293 | 99 | <- | Minus |
3R | 10128630..10129433 | 625..1428 | 99 | <- | Minus |
3R | 10129495..10129646 | 473..624 | 100 | <- | Minus |
3R | 10133215..10133587 | 100..472 | 99 | <- | Minus |
3R | 10134305..10134403 | 1..99 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10127651..10128515 | 1429..2293 | 99 | <- | Minus |
3R | 10128630..10129433 | 625..1428 | 99 | <- | Minus |
3R | 10129495..10129646 | 473..624 | 100 | <- | Minus |
3R | 10133215..10133587 | 100..472 | 99 | <- | Minus |
3R | 10134305..10134403 | 1..99 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 5953373..5954237 | 1429..2293 | 99 | <- | Minus |
arm_3R | 5954352..5955155 | 625..1428 | 99 | <- | Minus |
arm_3R | 5955217..5955368 | 473..624 | 100 | <- | Minus |
arm_3R | 5958937..5959309 | 100..472 | 99 | <- | Minus |
arm_3R | 5960027..5960125 | 1..99 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9868482..9869346 | 1429..2293 | 99 | <- | Minus |
3R | 9869461..9870264 | 625..1428 | 99 | <- | Minus |
3R | 9870326..9870477 | 473..624 | 100 | <- | Minus |
3R | 9874046..9874418 | 100..472 | 99 | <- | Minus |
3R | 9875136..9875234 | 1..99 | 100 | Minus |
Translation from 465 to 1796
> AT16930.pep MAGNGEASWCFSQIKGALDDDVTDADIISCVEFNHDGELLATGDKGGRVV IFQRDPASKAANPRRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLQ QKNPVHFLLSTNDKTVKLWKVSERDKSFGGYNTKEENGLIRDPQNVTALR VPSVKQIPLLVEASPRRTFANAHTYHINSISVNSDQETFLSADDLRINLW HLEVVNQSYNIVDIKPTNMEELTEVITAAEFHPTECNVFVYSSSKGTIRL CDMRSAALCDRHSKQFEEPENPTNRSFFSEIISSISDVKLSNSGRYMISR DYLSIKVWDLHMETKPIETYPVHEYLRAKLCSLYENDCIFDKFECCWNGK DSSIMTGSYNNFFRVFDRNSKKDVTLEASRDIIKPKTVLKPRKVCTGGKR KKDEISVDCLDFNKKILHTAWHPEENIIAVAATNNLFIFQDKF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18135-PA | 497 | GF18135-PA | 57..497 | 3..443 | 2364 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17299-PA | 499 | GG17299-PA | 58..499 | 2..443 | 2371 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13410-PA | 493 | GH13410-PA | 53..493 | 3..443 | 2347 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
tws-PH | 443 | CG6235-PH | 1..443 | 1..443 | 2347 | 100 | Plus |
tws-PG | 443 | CG6235-PG | 1..443 | 1..443 | 2347 | 100 | Plus |
tws-PC | 443 | CG6235-PC | 1..443 | 1..443 | 2347 | 100 | Plus |
tws-PE | 443 | CG6235-PE | 1..443 | 1..443 | 2347 | 100 | Plus |
tws-PD | 443 | CG6235-PD | 1..443 | 1..443 | 2347 | 100 | Plus |
tws-PB | 443 | CG6235-PB | 1..443 | 1..443 | 2347 | 100 | Plus |
tws-PI | 499 | CG6235-PI | 58..499 | 2..443 | 2336 | 99.8 | Plus |
tws-PF | 499 | CG6235-PF | 58..499 | 2..443 | 2336 | 99.8 | Plus |
tws-PA | 499 | CG6235-PA | 58..499 | 2..443 | 2336 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22387-PA | 493 | GI22387-PA | 53..493 | 3..443 | 2344 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23674-PA | 498 | GL23674-PA | 58..498 | 3..443 | 2364 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19463-PB | 468 | GA19463-PB | 26..468 | 1..443 | 2370 | 99.3 | Plus |
Dpse\GA19463-PA | 498 | GA19463-PA | 58..498 | 3..443 | 2364 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26183-PA | 499 | GM26183-PA | 58..499 | 2..443 | 2378 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20732-PA | 499 | GD20732-PA | 58..499 | 2..443 | 2378 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24420-PA | 493 | GJ24420-PA | 53..493 | 3..443 | 2346 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11431-PA | 494 | GK11431-PA | 54..494 | 3..443 | 2349 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24702-PA | 499 | GE24702-PA | 58..499 | 2..443 | 2371 | 99.5 | Plus |
Translation from 465 to 1796
> AT16930.hyp MAGNGEASWCFSQIKGALDDDVTDADIISCVEFNHDGELLATGDKGGRVV IFQRDPASKAANPRRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLQ QKNPVHFLLSTNDKTVKLWKVSERDKSFGGYNTKEENGLIRDPQNVTALR VPSVKQIPLLVEASPRRTFANAHTYHINSISVNSDQETFLSADDLRINLW HLEVVNQSYNIVDIKPTNMEELTEVITAAEFHPTECNVFVYSSSKGTIRL CDMRSAALCDRHSKQFEEPENPTNRSFFSEIISSISDVKLSNSGRYMISR DYLSIKVWDLHMETKPIETYPVHEYLRAKLCSLYENDCIFDKFECCWNGK DSSIMTGSYNNFFRVFDRNSKKDVTLEASRDIIKPKTVLKPRKVCTGGKR KKDEISVDCLDFNKKILHTAWHPEENIIAVAATNNLFIFQDKF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
tws-PH | 443 | CG6235-PH | 1..443 | 1..443 | 2347 | 100 | Plus |
tws-PG | 443 | CG6235-PG | 1..443 | 1..443 | 2347 | 100 | Plus |
tws-PC | 443 | CG6235-PC | 1..443 | 1..443 | 2347 | 100 | Plus |
tws-PE | 443 | CG6235-PE | 1..443 | 1..443 | 2347 | 100 | Plus |
tws-PD | 443 | CG6235-PD | 1..443 | 1..443 | 2347 | 100 | Plus |