Clone AT16988 Report

Search the DGRC for AT16988

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:169
Well:88
Vector:pOTB7
Associated Gene/TranscriptCG2137-RA
Protein status:AT16988.pep: gold
Preliminary Size:2379
Sequenced Size:2397

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2137 2004-07-14 Blastp of sequenced clone
CG2137 2008-04-29 Release 5.5 accounting
CG2137 2008-08-15 Release 5.9 accounting
CG2137 2008-12-18 5.12 accounting

Clone Sequence Records

AT16988.complete Sequence

2397 bp (2397 high quality bases) assembled on 2004-07-14

GenBank Submission: BT015304

> AT16988.complete
AACATATTTCCAAAAGCAAGCAAACACCCGTCCAAATTTTTGTGCTTTCG
TTAGATGTCAGATATATTGTTGACCCACGCAAAAATAGTCCAAATTTGGT
GTGTAAAGCAGGGGGTAATACCATGGCCAAGATCATTCAAATGGCGGTGA
TGCTGGGCAGCTCCAAGCTGGGCCACGGCGCCTTTGGATTCGATGAAAGG
CAAGCGGACTCGACTCCAGTGCCACAGATGAAACGGGAGCTGCCCACGCG
AAAGATGTGCCTGGAGGCCTTTAAGCGAACCCACTACGACATCCTCATCA
TTGGCGGCGGCGCCGTGGGTTCCGGCTGTGCTCTCGATGCTGCCACGCGG
GGCTTGAAGACCGCCCTGGTGGAAGCGAATGACTTTGGCAGCGGCACTTC
CTCCAAATCGAGCAAACTGTTGCACGGCGGCCTCAGGGATCTGGAGCAGG
CCATCTCGCGTCTGGACGTGGCTGCCTTTCGGCGTGTTCGCTGCTCCTTG
CAGGAACGCAGCCACATTGGCAAGCTGGCGCCGCATCTTAGCCAGCCGGT
CCCCATCCTGCTGCCCGTCCACCACTGGTGGCAGGCTCCGCTCTACTACA
TGAAGCTAAAGATTTACCACCTGATGGCGCCCAAGGCCACCAGGAGTTTT
CAGTATCTGAGTGCCGACGACGCGTTGGAAGTATTTCCGATGCTGCGACG
CCAGGAGCTGTTTGGCGCCTTCGTCTTCTACGAGGGTCAGCACGACGATG
CCAGGATGTGCCTTTCGGTTGCCCTTACAGCGGCTCGTTACGGAGCAGAT
ATCTGCAACCACATGAAGGTCTCGAGACTCATCAAGAACAAGGATGGCAA
TGTGGCGGGCGCGGAGGCGGTGGACCAGCTGACGGGCAAGAAGTATAGCA
TACGGGCGAAGGTGGTGGTCAACGCCACTGGCCACATGAGCGACAGCCTC
CGCCAGATGGAGGATTCGGAAGCCAAGCCGCTCTGCACGCGCAGCTGGTC
CTCGATCATCGTCATGCCCCGCTTCTACTGTCCGGAGGAGGTGGGCGTCT
TCGACCCGCACACGCCCTCTGGACGATCCATCTTTTTTCTGCCCTGGCAG
GGGCATACGCTAGTCGGGTCCAGCGATGAGCCTCTCAATCTGCCCGAGCA
GGACACGCAGCCCACGGAGACGGATGTGCAGTCCCTACTGGATTGCGTTA
AGCACTTTGTAACGCCCAACTTCGATGTGCGAAGATGCGATGTGCTGGCC
GTTTGGGGTGGTTACAAACCTCTGCCCGTGCAGTCCGATACACTGCATCA
TACCCGTTTCAAGAACCATGTAATCCAGCTAGGACCTCGAAACATGCTTT
CCATCGTTGGTGGCACGTGGTCGTCGTTTCGGGTTCTGGCTGAGAAAACC
GTGAATGCAGCCATCCGGTATGGAGATCTTTCACCGCTGCGTAAGGAATC
GGTGACCGCAGAGTCCTGCAAACTGGACGGAGCCAGTGGCTGGAGTCCGA
AGATGTTCATACGTCTGGTGCAGGACTTCGGAATGGAGCGGGACGTGGCT
GAGCACCTGTCGAACACGTACGGATCGAATGCCTTCAAAGTGGCCGTGAG
TGCGGACAGCAGTGGAAAGGCATGGCCCATTGTGGGTAAGCGCCTCCACT
CGGAGTTCCCGTATATTGAGGCGGAGGTAAAACAGGGCGTTCGAGACTTT
GCTTGCACGCTGGAGGACATGGTGGCGCGGCGACTGCGAGTGGCCTTTCT
AAATGTCCAGGTGGCCGAGGAGATACTGCCGCAAGTGGCTAACATCATGG
CCAAGGAGCTGAACTGGTCGCGAGATCAAATTAAAAAGCAGATCCGCCAG
ACGCGAACTTTTCTTAACTCCCAGATGGGCCAGCTGACCAAGGAGAGCGC
TTCGCAGATGAGCATTCCCATTAAGATGAGCGTGCGCCAAGTGCGCAAGT
TTGCCGGGCAGTTCAGGCAAATGGATGATAACAATACGGGGTACGTGTCG
ATTGCAGACTGCTGCAAGGCAATGAAAACGATGGGCGTAAAGGAGGTTCC
CGTCGACCTGATGCACGATGTCCTGCGGGACATTGATGTCCATGCCCAGG
GCAAGGTGAACCTGTATGAGTTCCTCCTGCTCATGTCGGCTATTGTGCAG
GGCAACACCGAGTACCTGCGGTACGCACGGCTGTATCTGGACCACAAAAG
GCAGATGCAAGGCAGCAACTTTCCCACCGTAATGCAAATGGAGCGTGCCG
GGGGCGGTCTTTGAAAGTATCATTCGTTGTAACCCTCTCCAGTTTGGAAT
ACTGCATCCGTTAAGCGTTGTCTACGCATTACACGTCGAAGCAGATCCCT
TCGGGGATCGCTGCCTCAACTTTAATTTAAAAAAAAAAAAAAAAAAA

AT16988.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:00:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG2137-RA 2379 CG2137-RA 2..2379 1..2378 11770 99.6 Plus
CG1598-RA 1411 CG1598-RA 1327..1411 2379..2295 425 100 Minus
Gpo-1.a 2431 Gpo-1.a 734..821 706..793 155 78.4 Plus
Gpo-1.a 2431 Gpo-1.a 382..428 357..403 145 87.2 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:34:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3423269..3425646 1..2378 11845 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:51:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:34:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7535920..7538298 1..2379 11775 99.7 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:48:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7537119..7539497 1..2379 11775 99.6 Plus
2R 25260384 2R 15860917..15861004 793..706 155 78.4 Minus
2R 25260384 2R 15861452..15861498 403..357 145 87.2 Minus
Blast to na_te.dros performed on 2019-03-16 12:34:46 has no hits.

AT16988.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:35:39 Download gff for AT16988.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3423269..3425646 1..2378 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:10:19 Download gff for AT16988.complete
Subject Subject Range Query Range Percent Splice Strand
CG2137-RA 1..2142 123..2264 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:35:02 Download gff for AT16988.complete
Subject Subject Range Query Range Percent Splice Strand
CG2137-RA 1..2142 123..2264 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:46:17 Download gff for AT16988.complete
Subject Subject Range Query Range Percent Splice Strand
CG2137-RA 1..2142 123..2264 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:18:53 Download gff for AT16988.complete
Subject Subject Range Query Range Percent Splice Strand
CG2137-RA 1..2142 123..2264 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:48:28 Download gff for AT16988.complete
Subject Subject Range Query Range Percent Splice Strand
CG2137-RA 1..2142 123..2264 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:41:35 Download gff for AT16988.complete
Subject Subject Range Query Range Percent Splice Strand
CG2137-RA 2..2379 1..2378 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:35:02 Download gff for AT16988.complete
Subject Subject Range Query Range Percent Splice Strand
CG2137-RA 2..2379 1..2378 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:46:17 Download gff for AT16988.complete
Subject Subject Range Query Range Percent Splice Strand
CG2137-RA 2..2379 1..2378 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:18:53 Download gff for AT16988.complete
Subject Subject Range Query Range Percent Splice Strand
CG2137-RA 2..2379 1..2378 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:48:28 Download gff for AT16988.complete
Subject Subject Range Query Range Percent Splice Strand
CG2137-RA 2..2379 1..2378 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:35:39 Download gff for AT16988.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7535920..7538297 1..2378 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:35:39 Download gff for AT16988.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7535920..7538297 1..2378 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:35:39 Download gff for AT16988.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7535920..7538297 1..2378 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:46:17 Download gff for AT16988.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3423425..3425802 1..2378 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:56:06 Download gff for AT16988.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7537119..7539496 1..2378 99   Plus

AT16988.hyp Sequence

Translation from 2 to 2263

> AT16988.hyp
HISKSKQTPVQIFVLSLDVRYIVDPRKNSPNLVCKAGGNTMAKIIQMAVM
LGSSKLGHGAFGFDERQADSTPVPQMKRELPTRKMCLEAFKRTHYDILII
GGGAVGSGCALDAATRGLKTALVEANDFGSGTSSKSSKLLHGGLRDLEQA
ISRLDVAAFRRVRCSLQERSHIGKLAPHLSQPVPILLPVHHWWQAPLYYM
KLKIYHLMAPKATRSFQYLSADDALEVFPMLRRQELFGAFVFYEGQHDDA
RMCLSVALTAARYGADICNHMKVSRLIKNKDGNVAGAEAVDQLTGKKYSI
RAKVVVNATGHMSDSLRQMEDSEAKPLCTRSWSSIIVMPRFYCPEEVGVF
DPHTPSGRSIFFLPWQGHTLVGSSDEPLNLPEQDTQPTETDVQSLLDCVK
HFVTPNFDVRRCDVLAVWGGYKPLPVQSDTLHHTRFKNHVIQLGPRNMLS
IVGGTWSSFRVLAEKTVNAAIRYGDLSPLRKESVTAESCKLDGASGWSPK
MFIRLVQDFGMERDVAEHLSNTYGSNAFKVAVSADSSGKAWPIVGKRLHS
EFPYIEAEVKQGVRDFACTLEDMVARRLRVAFLNVQVAEEILPQVANIMA
KELNWSRDQIKKQIRQTRTFLNSQMGQLTKESASQMSIPIKMSVRQVRKF
AGQFRQMDDNNTGYVSIADCCKAMKTMGVKEVPVDLMHDVLRDIDVHAQG
KVNLYEFLLLMSAIVQGNTEYLRYARLYLDHKRQMQGSNFPTVMQMERAG
GGL*

AT16988.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:01:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG2137-PA 713 CG2137-PA 1..713 41..753 3711 100 Plus
Gpo-1-PD 724 CG8256-PD 37..724 69..753 1659 45.8 Plus
Gpo-1-PA 724 CG8256-PA 37..724 69..753 1659 45.8 Plus
Gpo-1-PB 724 CG8256-PB 37..724 69..753 1659 45.8 Plus
Gpo-1-PC 724 CG8256-PC 37..724 69..753 1659 45.8 Plus

AT16988.pep Sequence

Translation from 122 to 2263

> AT16988.pep
MAKIIQMAVMLGSSKLGHGAFGFDERQADSTPVPQMKRELPTRKMCLEAF
KRTHYDILIIGGGAVGSGCALDAATRGLKTALVEANDFGSGTSSKSSKLL
HGGLRDLEQAISRLDVAAFRRVRCSLQERSHIGKLAPHLSQPVPILLPVH
HWWQAPLYYMKLKIYHLMAPKATRSFQYLSADDALEVFPMLRRQELFGAF
VFYEGQHDDARMCLSVALTAARYGADICNHMKVSRLIKNKDGNVAGAEAV
DQLTGKKYSIRAKVVVNATGHMSDSLRQMEDSEAKPLCTRSWSSIIVMPR
FYCPEEVGVFDPHTPSGRSIFFLPWQGHTLVGSSDEPLNLPEQDTQPTET
DVQSLLDCVKHFVTPNFDVRRCDVLAVWGGYKPLPVQSDTLHHTRFKNHV
IQLGPRNMLSIVGGTWSSFRVLAEKTVNAAIRYGDLSPLRKESVTAESCK
LDGASGWSPKMFIRLVQDFGMERDVAEHLSNTYGSNAFKVAVSADSSGKA
WPIVGKRLHSEFPYIEAEVKQGVRDFACTLEDMVARRLRVAFLNVQVAEE
ILPQVANIMAKELNWSRDQIKKQIRQTRTFLNSQMGQLTKESASQMSIPI
KMSVRQVRKFAGQFRQMDDNNTGYVSIADCCKAMKTMGVKEVPVDLMHDV
LRDIDVHAQGKVNLYEFLLLMSAIVQGNTEYLRYARLYLDHKRQMQGSNF
PTVMQMERAGGGL*

AT16988.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:08:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13183-PA 714 GF13183-PA 1..714 1..713 3085 81.2 Plus
Dana\GF13366-PA 726 GF13366-PA 43..726 34..713 1688 46.3 Plus
Dana\GF22995-PA 732 GF22995-PA 61..614 37..586 854 34.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:08:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23286-PA 713 GG23286-PA 1..713 1..713 3655 95.4 Plus
Dere\GG22328-PA 725 GG22328-PA 37..725 29..713 1682 45.8 Plus
Dere\GG23871-PA 650 GG23871-PA 48..596 40..586 826 34.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:08:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20102-PA 711 GH20102-PA 1..711 1..713 2445 65.1 Plus
Dgri\GH21279-PA 726 GH21279-PA 43..726 34..713 1722 46 Plus
Dgri\GH12999-PA 713 GH12999-PA 42..576 38..586 829 34.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:42
Subject Length Description Subject Range Query Range Score Percent Strand
Gpo2-PA 713 CG2137-PA 1..713 1..713 3711 100 Plus
Gpo1-PD 724 CG8256-PD 37..724 29..713 1659 45.8 Plus
Gpo1-PA 724 CG8256-PA 37..724 29..713 1659 45.8 Plus
Gpo1-PB 724 CG8256-PB 37..724 29..713 1659 45.8 Plus
Gpo1-PC 724 CG8256-PC 37..724 29..713 1659 45.8 Plus
Gpo3-PD 626 CG7311-PD 4..553 40..586 889 35.1 Plus
Gpo3-PE 148 CG7311-PE 4..127 40..163 265 45.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:08:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18998-PA 710 GI18998-PA 1..710 1..713 2478 66 Plus
Dmoj\GI19104-PA 726 GI19104-PA 43..726 34..713 1670 45.7 Plus
Dmoj\GI17672-PA 608 GI17672-PA 42..438 39..431 628 36.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:08:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20015-PA 715 GL20015-PA 1..715 1..713 2736 72.5 Plus
Dper\GL11848-PA 726 GL11848-PA 43..726 34..713 1667 45.4 Plus
Dper\GL26078-PA 777 GL26078-PA 71..677 38..610 837 34.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:08:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15262-PA 715 GA15262-PA 1..715 1..713 2710 71.8 Plus
Dpse\GA20935-PA 726 GA20935-PA 43..726 34..713 1667 45.4 Plus
Dpse\GA20252-PA 745 GA20252-PA 34..645 38..610 831 34.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:08:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20962-PA 669 GM20962-PA 1..669 45..713 3612 99.3 Plus
Dsec\GM20116-PA 725 GM20116-PA 37..725 29..713 1682 45.8 Plus
Dsec\GM10691-PA 672 GM10691-PA 50..599 40..586 866 35.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:08:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10489-PA 703 GD10489-PA 1..703 1..713 3697 96.5 Plus
Dsim\GD25593-PA 731 GD25593-PA 37..731 29..713 1658 45.3 Plus
Dsim\GD23915-PA 672 GD23915-PA 50..599 40..586 864 35.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:08:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19963-PA 711 GJ19963-PA 1..711 1..713 2495 66.2 Plus
Dvir\GJ22234-PA 726 GJ22234-PA 43..726 34..713 1660 45.6 Plus
Dvir\GJ17868-PA 1153 GJ17868-PA 42..592 39..586 886 36 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:08:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10696-PA 720 GK10696-PA 1..720 1..713 2734 70.5 Plus
Dwil\GK20797-PA 726 GK20797-PA 43..726 34..713 1686 46 Plus
Dwil\GK24507-PA 706 GK24507-PA 1..560 36..586 883 37 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:08:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19132-PA 713 GE19132-PA 1..713 1..713 3673 95.7 Plus
Dyak\GE14126-PA 725 GE14126-PA 37..725 29..713 1682 45.8 Plus
Dyak\GE18674-PA 652 GE18674-PA 48..597 40..586 852 35.5 Plus