Clone AT17606 Report

Search the DGRC for AT17606

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:176
Well:6
Vector:pOTB7
Associated Gene/TranscriptCG13494-RA
Protein status:AT17606.pep: gold
Preliminary Size:330
Sequenced Size:625

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13494 2002-01-01 Sim4 clustering to Release 2
CG13494 2002-04-26 Blastp of sequenced clone
CG13494 2003-01-01 Sim4 clustering to Release 3
CG13494 2008-04-29 Release 5.5 accounting
CG13494 2008-08-15 Release 5.9 accounting
CG13494 2008-12-18 5.12 accounting

Clone Sequence Records

AT17606.complete Sequence

625 bp (625 high quality bases) assembled on 2002-04-26

GenBank Submission: AY113276

> AT17606.complete
ATTTTTGTAATTTATTCTAATTTACAATAAGCTAAACGTTAAACATTTCA
ATACCGTCAACAAGTGATTAATCATGGATGACACATTATCAACGGTAGAA
GGCGGGATGACGGAAACATCCTCATGGAGCACCACGATCGCCACCACCAC
CACTACAGAGGCCGCCAAGGCGGGTAGCATGGCTGTCGGTATTATTGTCC
TGATCGTTGTTATGGTGCTCCTCTGCTGCCTGCTCATCATCTGCCTGCCG
CTCCTCTGCCTGTGCGGCTGTTGCGGACTCGCCTGCTCCGCGTGCCTCGC
TTGCGACGAAGGATGTTGTGGTGAAGGCGGCGGCGGTGGATGTTGCGGCG
ATGACGGCGGTGGATGTTGCGGCGATGGCGGCGGGTGTGGCGATTGTGGC
GACGGCTGTGGGGACTGCACCTTGGACGATGATTAATTCGGCGATAATTC
AAGTTTCTATTAATATGTACGTAGTGCTAGGATATGCGATTCGAAAGCCT
ATAAATTTAATGTGCTCAGGTACAGATTCGTTAGGAGCATCCGTATGCTC
ATTGGCAAAATTGTTGTCTATTCATAAAAAATAAAAAAATCTAGCTTAAT
TTTGAAAAAAAAAAAAAAAAAAAAA

AT17606.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:55:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG13494-RA 608 CG13494-RA 1..607 1..607 3035 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:41:53
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 17840585..17841188 604..1 2960 99.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:51:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:41:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21954239..21954845 607..1 3035 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:14:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 21955438..21956044 607..1 3035 100 Minus
Blast to na_te.dros performed on 2019-03-16 12:41:52 has no hits.

AT17606.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:42:37 Download gff for AT17606.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 17840585..17840777 412..604 100 == Minus
chr2R 17840872..17841188 1..317 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:10:58 Download gff for AT17606.complete
Subject Subject Range Query Range Percent Splice Strand
CG13494-RA 1..363 74..436 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:53:19 Download gff for AT17606.complete
Subject Subject Range Query Range Percent Splice Strand
CG13494-RA 1..363 74..436 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:56:25 Download gff for AT17606.complete
Subject Subject Range Query Range Percent Splice Strand
CG13494-RA 1..363 74..436 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:35:45 Download gff for AT17606.complete
Subject Subject Range Query Range Percent Splice Strand
CG13494-RA 1..363 74..436 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:52:02 Download gff for AT17606.complete
Subject Subject Range Query Range Percent Splice Strand
CG13494-RA 1..363 74..436 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:05:27 Download gff for AT17606.complete
Subject Subject Range Query Range Percent Splice Strand
CG13494-RA 1..604 1..604 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:53:19 Download gff for AT17606.complete
Subject Subject Range Query Range Percent Splice Strand
CG13494-RA 1..604 1..604 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:56:25 Download gff for AT17606.complete
Subject Subject Range Query Range Percent Splice Strand
CG13494-RA 1..604 1..604 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:35:45 Download gff for AT17606.complete
Subject Subject Range Query Range Percent Splice Strand
CG13494-RA 1..604 1..604 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:52:02 Download gff for AT17606.complete
Subject Subject Range Query Range Percent Splice Strand
CG13494-RA 1..604 1..604 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:42:37 Download gff for AT17606.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21954242..21954845 1..604 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:42:37 Download gff for AT17606.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21954242..21954845 1..604 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:42:37 Download gff for AT17606.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21954242..21954845 1..604 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:56:25 Download gff for AT17606.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17841747..17842350 1..604 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:18:17 Download gff for AT17606.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21955441..21956044 1..604 100   Minus

AT17606.pep Sequence

Translation from 73 to 435

> AT17606.pep
MDDTLSTVEGGMTETSSWSTTIATTTTTEAAKAGSMAVGIIVLIVVMVLL
CCLLIICLPLLCLCGCCGLACSACLACDEGCCGEGGGGGCCGDDGGGCCG
DGGGCGDCGDGCGDCTLDDD*

AT17606.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:25:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG13494-PA 120 CG13494-PA 1..120 1..120 686 100 Plus

AT17606.hyp Sequence

Translation from 73 to 435

> AT17606.hyp
MDDTLSTVEGGMTETSSWSTTIATTTTTEAAKAGSMAVGIIVLIVVMVLL
CCLLIICLPLLCLCGCCGLACSACLACDEGCCGEGGGGGCCGDDGGGCCG
DGGGCGDCGDGCGDCTLDDD*

AT17606.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:02:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG13494-PA 120 CG13494-PA 1..120 1..120 686 100 Plus