Clone AT17625 Report

Search the DGRC for AT17625

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:176
Well:25
Vector:pOTB7
Associated Gene/TranscriptmTTF-RA
Protein status:AT17625.pep: gold
Preliminary Size:1442
Sequenced Size:1515

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18124 2002-01-01 Sim4 clustering to Release 2
CG18124 2002-01-09 Blastp of sequenced clone
CG18124 2003-01-01 Sim4 clustering to Release 3
mTTF 2008-04-29 Release 5.5 accounting
mTTF 2008-08-15 Release 5.9 accounting
mTTF 2008-12-18 5.12 accounting

Clone Sequence Records

AT17625.complete Sequence

1515 bp (1515 high quality bases) assembled on 2002-01-09

GenBank Submission: AY075225

> AT17625.complete
GGCCCACTTGGTCAGCTGTTTATCGCCGCAACATATCAGCTGTTTTCCGC
TTGTTTTATAAGTTGAAGAACTTTATTTTCTGTCTTGATTCTGTAAATTA
AGCAAATTCGGGATGATTAGAAGCCTTCTGCGCAGCTTTGAGACGGCACT
CAAGCTGCATGCCGGCTTAAATATGCACCCAATGCACTGCAGCAGGCGCC
TACTCTTCTCGCAGTACGAAAACCGCGCCAGTCCGAGCAGACTGACCTCC
AGTGGCACTTTAGGTAGCAACGAGGCGGAAAACGATTATGTGCCTTATCG
CCAGGATCGGGAGACTGGAACCAAGACGCGGGTGCTCCTCGAAGCTCTGC
GGGAACGTTTTCGCTTCACGGACGCTGAGCTCCAAAAGATAATCAGCGAC
GAGCTGGTGCACCGCTGCTACCGCGGTAGATCACTGACTCTGGTCATGGA
CACACTGCAGCTAGAGGGCGTTAGCAGGCGCAGCTTCGTGGAGTATCCTT
GGCTACTGTCGCTGGACAATAAACGCTTGGAGCTAAAGATGCAGCTACTC
AAGTCAATGGACTTTAAGGACATCAATCATTTTGTGCCTTTCCTGCGCCT
CACTGTTCCACGTCTTCGAAAACTGGTGGGTGCTCTGAACTCTGAGAGGG
ATGCAATGCCACAGCGAAATCGTGTCTACTATATCAGCGAAAAGCTGGAT
GTCAGCCCCGATATTGTGAGCAAATATCTATCGAAGAGGCTGTTTATCCT
GGAAATGCCGTTCGAGATGTTCGAAAAGAACCTGCAGCACATGATCGACT
ACAATGTGTCGCCAATAAACGTACTCAAGGATCTATGGGCCTTTCGCTAT
ACTCCAAAGTCTGTTCAGTTGCGTTTGGAGCGCGCCAAGCGGGCGAAAAA
GGACAAGATCATGCCGTGGATGGTGCGCTGCCCGGAGCCAATACTGCAGC
GCTCCCTGAAGCTTTCTCTCGACGAACTGAAGGTTTTGGGAGAGTTCTCC
TCCGTGGTGGAATACTTAGCGCATCGTCTTGGTTTCAGCACCAGTGAAGC
CAAGGCAATCATGGACAAACATCCGCAGGTGCACACCGTGCGAGTTACCA
AGATCAAAGAGGTGCTAGACTACCTACTCGATGAGGCCCAGTTTACCAGA
TTTGAGGTCGCTCAAAATCCTCGAATTCTATGCCACAGCCTGAAAACCAC
AAAGGAGCGCATGGAAGAACTGAAATCGCACGGTTGTCGACCCTCCTCTC
TTGTAATTCTTTGCCGCAGCCGGAGGGAGTACGATAAGTTTTTGCAGAAC
TGGATAAGCCATGAAAGAAATCCGCAAAGTGTATCAGAAGGATGATGAAC
TGACGAATGACCTGATGCCATCACCGTGAAAGCTTAAAAAGTTGTTGTAA
AGTTAAGATACTTTTTTCAAAAGTTTTGCCACGAAATTGAACACGATTAA
AAGCCAATATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAA

AT17625.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:32:28
Subject Length Description Subject Range Query Range Score Percent Strand
mTTF-RA 1584 mTTF-RA 105..1572 1..1468 7340 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:39:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 14346453..14347033 1102..522 2905 100 Minus
chr2L 23010047 chr2L 14347098..14347618 521..1 2605 100 Minus
chr2L 23010047 chr2L 14346038..14346399 1462..1101 1810 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:51:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:39:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14347653..14348233 1102..522 2905 100 Minus
2L 23513712 2L 14348298..14348818 521..1 2605 100 Minus
2L 23513712 2L 14347232..14347599 1468..1101 1840 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:00:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14347653..14348233 1102..522 2905 100 Minus
2L 23513712 2L 14348298..14348818 521..1 2605 100 Minus
2L 23513712 2L 14347232..14347599 1468..1101 1840 100 Minus
Blast to na_te.dros performed on 2019-03-16 05:39:32 has no hits.

AT17625.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:40:42 Download gff for AT17625.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 14346038..14346397 1103..1462 100 <- Minus
chr2L 14346453..14347033 522..1102 100 <- Minus
chr2L 14347098..14347618 1..521 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:10:59 Download gff for AT17625.complete
Subject Subject Range Query Range Percent Splice Strand
mTTF-RA 1..1233 113..1345 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:53:41 Download gff for AT17625.complete
Subject Subject Range Query Range Percent Splice Strand
mTTF-RA 1..1233 113..1345 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:43:04 Download gff for AT17625.complete
Subject Subject Range Query Range Percent Splice Strand
mTTF-RA 1..1233 113..1345 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:18:59 Download gff for AT17625.complete
Subject Subject Range Query Range Percent Splice Strand
mTTF-RA 1..1233 113..1345 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:06:55 Download gff for AT17625.complete
Subject Subject Range Query Range Percent Splice Strand
mTTF-RA 1..1233 113..1345 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:17:08 Download gff for AT17625.complete
Subject Subject Range Query Range Percent Splice Strand
mTTF-RA 1..1462 1..1462 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:53:41 Download gff for AT17625.complete
Subject Subject Range Query Range Percent Splice Strand
mTTF-RA 1..1462 1..1462 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:43:04 Download gff for AT17625.complete
Subject Subject Range Query Range Percent Splice Strand
mTTF-RA 1..1433 29..1461 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:18:59 Download gff for AT17625.complete
Subject Subject Range Query Range Percent Splice Strand
mTTF-RA 1..1462 1..1462 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:06:55 Download gff for AT17625.complete
Subject Subject Range Query Range Percent Splice Strand
mTTF-RA 1..1433 29..1461 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:40:42 Download gff for AT17625.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14347238..14347597 1103..1462 100 <- Minus
2L 14347653..14348233 522..1102 100 <- Minus
2L 14348298..14348818 1..521 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:40:42 Download gff for AT17625.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14347238..14347597 1103..1462 100 <- Minus
2L 14347653..14348233 522..1102 100 <- Minus
2L 14348298..14348818 1..521 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:40:42 Download gff for AT17625.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14347238..14347597 1103..1462 100 <- Minus
2L 14347653..14348233 522..1102 100 <- Minus
2L 14348298..14348818 1..521 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:43:04 Download gff for AT17625.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14347238..14347597 1103..1462 100 <- Minus
arm_2L 14347653..14348233 522..1102 100 <- Minus
arm_2L 14348298..14348818 1..521 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:53:16 Download gff for AT17625.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14347238..14347597 1103..1462 100 <- Minus
2L 14347653..14348233 522..1102 100 <- Minus
2L 14348298..14348818 1..521 100   Minus

AT17625.hyp Sequence

Translation from 112 to 1344

> AT17625.hyp
MIRSLLRSFETALKLHAGLNMHPMHCSRRLLFSQYENRASPSRLTSSGTL
GSNEAENDYVPYRQDRETGTKTRVLLEALRERFRFTDAELQKIISDELVH
RCYRGRSLTLVMDTLQLEGVSRRSFVEYPWLLSLDNKRLELKMQLLKSMD
FKDINHFVPFLRLTVPRLRKLVGALNSERDAMPQRNRVYYISEKLDVSPD
IVSKYLSKRLFILEMPFEMFEKNLQHMIDYNVSPINVLKDLWAFRYTPKS
VQLRLERAKRAKKDKIMPWMVRCPEPILQRSLKLSLDELKVLGEFSSVVE
YLAHRLGFSTSEAKAIMDKHPQVHTVRVTKIKEVLDYLLDEAQFTRFEVA
QNPRILCHSLKTTKERMEELKSHGCRPSSLVILCRSRREYDKFLQNWISH
ERNPQSVSEG*

AT17625.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:02:05
Subject Length Description Subject Range Query Range Score Percent Strand
mTTF-PA 410 CG18124-PA 1..410 1..410 2107 100 Plus

AT17625.pep Sequence

Translation from 112 to 1344

> AT17625.pep
MIRSLLRSFETALKLHAGLNMHPMHCSRRLLFSQYENRASPSRLTSSGTL
GSNEAENDYVPYRQDRETGTKTRVLLEALRERFRFTDAELQKIISDELVH
RCYRGRSLTLVMDTLQLEGVSRRSFVEYPWLLSLDNKRLELKMQLLKSMD
FKDINHFVPFLRLTVPRLRKLVGALNSERDAMPQRNRVYYISEKLDVSPD
IVSKYLSKRLFILEMPFEMFEKNLQHMIDYNVSPINVLKDLWAFRYTPKS
VQLRLERAKRAKKDKIMPWMVRCPEPILQRSLKLSLDELKVLGEFSSVVE
YLAHRLGFSTSEAKAIMDKHPQVHTVRVTKIKEVLDYLLDEAQFTRFEVA
QNPRILCHSLKTTKERMEELKSHGCRPSSLVILCRSRREYDKFLQNWISH
ERNPQSVSEG*

AT17625.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:28:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14494-PA 418 GF14494-PA 1..417 1..409 1692 76.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:28:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10153-PA 412 GG10153-PA 1..412 1..410 1993 90.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:28:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10403-PA 431 GH10403-PA 1..417 1..402 1551 71.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:24:48
Subject Length Description Subject Range Query Range Score Percent Strand
mTTF-PA 410 CG18124-PA 1..410 1..410 2107 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:28:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17383-PA 426 GI17383-PA 1..424 1..408 1514 67.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:28:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21052-PA 424 GL21052-PA 1..423 1..409 1611 71.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:28:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14804-PA 424 GA14804-PA 1..423 1..409 1611 71.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:28:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14869-PA 410 GM14869-PA 1..410 1..410 2052 94.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:28:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22012-PA 403 GD22012-PA 1..403 1..410 1985 91.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:28:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18060-PA 431 GJ18060-PA 1..425 1..409 1543 69.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:28:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18115-PA 414 GK18115-PA 1..404 1..402 1529 72.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:28:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25060-PA 412 GE25060-PA 1..412 1..410 2010 92.2 Plus