Clone AT17652 Report

Search the DGRC for AT17652

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:176
Well:52
Vector:pOTB7
Associated Gene/TranscriptCG12111-RA
Protein status:AT17652.pep: gold
Preliminary Size:567
Sequenced Size:636

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12111 2001-12-16 Blastp of sequenced clone
CG12111 2002-01-01 Sim4 clustering to Release 2
CG12111 2003-01-01 Sim4 clustering to Release 3
CG12111 2008-04-29 Release 5.5 accounting
CG12111 2008-08-15 Release 5.9 accounting
CG12111 2008-12-18 5.12 accounting

Clone Sequence Records

AT17652.complete Sequence

636 bp (636 high quality bases) assembled on 2001-12-16

GenBank Submission: AY070795

> AT17652.complete
CCGCTGACCACTGATGTACCGCACCGAGACTCTGCTGCTAATCCTGACGA
GCGTCGGGATACCGTCACTGGCCTATCTGCCCGATGTGAACATATTCACC
AACTACCGCACCGAGGTCTATAATGGCATTCCATCGGAGATTGATACCAC
ACCGTTCGTGCGGATCGGGGACAACTATTACTACATCGAGCCCATGAATA
AGGTGAATTGGTTTCAGGCGGCCGGCGCCTGTCGCATGATGAACGCCCAC
TTGGCCTCCATCGAGGATAAGCCGGAAATGGAGGCGCTGATCAAATACAT
GAAGGCCAAGGGGTTCAAGAACAATGATTACTTTTGGATATCGGGCAATG
ACCTGGGCACCGAGGGCGCCTTCTATTGGATGTCCAACGGCCGCCCGATG
ACCTACGCCCCTTGGAACGGGCCCAAGCAAATGCCGGATAACTACGGCGG
CAACGAGAACTGCGTCCACATGTTCGCCACCCGGGAGATGATCAACGATG
CCAACTGCAAGATCCAGATGCTGTACGTCTGCGAGGCGACGGAACCGAAA
ACCTTCAAGTTCACCTACATTAAGTGGTAGTTTTCGATTGGTTCTAAAAT
AAAACCAGCATTACATACAAAAAAAAAAAAAAAAAA

AT17652.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:38:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG12111.a 2841 CG12111.a 67..685 1..619 3095 100 Plus
CG12111-RA 802 CG12111-RA 93..711 1..619 3095 100 Plus
CG12111.b 1529 CG12111.b 67..685 1..619 3095 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:58:27
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 8461988..8462481 618..125 2470 100 Minus
chrX 22417052 chrX 8462546..8462671 126..1 630 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:51:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:58:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8570251..8570745 619..125 2475 100 Minus
X 23542271 X 8570810..8570935 126..1 630 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:05:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 8578349..8578843 619..125 2475 100 Minus
X 23527363 X 8578908..8579033 126..1 630 100 Minus
Blast to na_te.dros performed on 2019-03-16 04:58:26 has no hits.

AT17652.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:59:17 Download gff for AT17652.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 8461988..8462480 126..618 100 <- Minus
chrX 8462547..8462671 1..125 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:11:01 Download gff for AT17652.complete
Subject Subject Range Query Range Percent Splice Strand
CG12111-RA 1..567 14..580 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:01:49 Download gff for AT17652.complete
Subject Subject Range Query Range Percent Splice Strand
CG12111-RA 1..567 14..580 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:47:33 Download gff for AT17652.complete
Subject Subject Range Query Range Percent Splice Strand
CG12111-RA 1..567 14..580 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:26:20 Download gff for AT17652.complete
Subject Subject Range Query Range Percent Splice Strand
CG12111-RA 1..567 14..580 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:56:09 Download gff for AT17652.complete
Subject Subject Range Query Range Percent Splice Strand
CG12111-RA 1..567 14..580 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:28:18 Download gff for AT17652.complete
Subject Subject Range Query Range Percent Splice Strand
CG12111-RA 1..618 1..618 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:01:49 Download gff for AT17652.complete
Subject Subject Range Query Range Percent Splice Strand
CG12111-RA 1..618 1..618 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:47:33 Download gff for AT17652.complete
Subject Subject Range Query Range Percent Splice Strand
CG12111-RA 14..631 1..618 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:26:21 Download gff for AT17652.complete
Subject Subject Range Query Range Percent Splice Strand
CG12111-RA 1..618 1..618 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:56:09 Download gff for AT17652.complete
Subject Subject Range Query Range Percent Splice Strand
CG12111-RA 14..631 1..618 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:59:17 Download gff for AT17652.complete
Subject Subject Range Query Range Percent Splice Strand
X 8570252..8570744 126..618 100 <- Minus
X 8570811..8570935 1..125 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:59:17 Download gff for AT17652.complete
Subject Subject Range Query Range Percent Splice Strand
X 8570252..8570744 126..618 100 <- Minus
X 8570811..8570935 1..125 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:59:17 Download gff for AT17652.complete
Subject Subject Range Query Range Percent Splice Strand
X 8570252..8570744 126..618 100 <- Minus
X 8570811..8570935 1..125 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:47:33 Download gff for AT17652.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8464285..8464777 126..618 100 <- Minus
arm_X 8464844..8464968 1..125 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:02:04 Download gff for AT17652.complete
Subject Subject Range Query Range Percent Splice Strand
X 8578350..8578842 126..618 100 <- Minus
X 8578909..8579033 1..125 100   Minus

AT17652.pep Sequence

Translation from 13 to 579

> AT17652.pep
MYRTETLLLILTSVGIPSLAYLPDVNIFTNYRTEVYNGIPSEIDTTPFVR
IGDNYYYIEPMNKVNWFQAAGACRMMNAHLASIEDKPEMEALIKYMKAKG
FKNNDYFWISGNDLGTEGAFYWMSNGRPMTYAPWNGPKQMPDNYGGNENC
VHMFATREMINDANCKIQMLYVCEATEPKTFKFTYIKW*

AT17652.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:19:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21734-PA 194 GF21734-PA 15..194 9..188 909 92.2 Plus
Dana\GF14041-PA 265 GF14041-PA 117..265 43..187 258 38.3 Plus
Dana\GF24446-PA 386 GF24446-PA 249..382 45..174 248 37.7 Plus
Dana\GF14718-PA 186 GF14718-PA 32..185 37..188 231 33.5 Plus
Dana\GF15692-PA 176 GF15692-PA 47..174 42..177 208 33.1 Plus
Dana\GF14041-PA 265 GF14041-PA 21..110 28..115 163 37.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:19:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19039-PA 188 GG19039-PA 1..188 1..188 989 97.3 Plus
Dere\GG21175-PA 186 GG21175-PA 1..179 1..180 270 34.6 Plus
Dere\GG14773-PA 376 GG14773-PA 219..372 34..174 248 35.7 Plus
Dere\GG21174-PA 186 GG21174-PA 32..174 37..175 203 29.7 Plus
Dere\GG24559-PA 1288 GG24559-PA 139..261 48..181 197 33.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:19:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24460-PA 195 GH24460-PA 14..195 7..188 855 84.1 Plus
Dgri\GH15445-PA 407 GH15445-PA 270..403 45..174 244 37 Plus
Dgri\GH11271-PA 376 GH11271-PA 249..371 48..174 231 38.8 Plus
Dgri\GH23701-PA 385 GH23701-PA 258..380 48..174 231 38.8 Plus
Dgri\GH13620-PA 176 GH13620-PA 41..165 48..174 222 34.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:16:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG12111-PB 188 CG12111-PB 1..188 1..188 1039 100 Plus
CG12111-PA 188 CG12111-PA 1..188 1..188 1039 100 Plus
lectin-37Da-PB 186 CG33532-PB 21..179 28..180 272 36 Plus
lectin-37Da-PA 186 CG33532-PA 21..179 28..180 272 36 Plus
CG43055-PA 180 CG43055-PA 10..177 20..183 257 34.3 Plus
tfc-PB 376 CG9134-PB 219..372 34..174 255 35.7 Plus
tfc-PC 188 CG9134-PC 51..184 45..174 252 37.2 Plus
tfc-PA 188 CG9134-PA 51..184 45..174 252 37.2 Plus
Sfp24F-PA 175 CG42468-PA 38..170 48..179 231 35.8 Plus
Sfp24F-PB 175 CG42468-PB 38..170 48..179 231 35.8 Plus
Lectin-galC1-PB 186 CG9976-PB 38..186 43..187 204 29.2 Plus
Lectin-galC1-PA 186 CG9976-PA 38..186 43..187 204 29.2 Plus
lectin-22C-PB 263 CG42295-PB 130..258 39..177 182 31.2 Plus
lectin-21Ca-PA 269 CG2826-PA 127..265 30..174 176 29 Plus
lectin-24A-PA 282 CG3410-PA 162..279 48..174 172 29.9 Plus
CG15358-PE 252 CG15358-PE 128..248 48..177 171 30.8 Plus
CG15358-PD 252 CG15358-PD 128..248 48..177 171 30.8 Plus
lectin-30A-PA 223 CG17011-PA 96..221 39..177 168 30.2 Plus
CG15818-PA 283 CG15818-PA 159..279 48..175 162 27.1 Plus
lectin-24Db-PA 359 CG2958-PA 238..354 48..174 159 27.6 Plus
lectin-21Cb-PB 249 CG13686-PB 132..248 48..175 156 26.9 Plus
lectin-28C-PC 265 CG7106-PC 143..263 48..177 155 30 Plus
lectin-28C-PB 265 CG7106-PB 143..263 48..177 155 30 Plus
nw-PB 193 CG18431-PB 31..105 56..128 150 45.5 Plus
nw-PD 194 CG43164-PD 31..105 56..128 150 45.5 Plus
nw-PA 194 CG18431-PA 31..105 56..128 150 45.5 Plus
nw-PE 490 CG43164-PE 31..105 56..128 150 45.5 Plus
nw-PC 491 CG43164-PC 31..105 56..128 150 45.5 Plus
CG2839-PA 826 CG2839-PA 139..266 39..177 147 25.7 Plus
CG7763-PD 232 CG7763-PD 109..227 48..174 144 25.2 Plus
CG7763-PC 232 CG7763-PC 109..227 48..174 144 25.2 Plus
CG11211-PA 176 CG11211-PA 41..160 55..174 140 25.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:19:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14792-PA 194 GI14792-PA 14..194 8..188 895 87.3 Plus
Dmoj\GI14863-PA 171 GI14863-PA 20..168 38..183 280 37.9 Plus
Dmoj\GI13046-PA 379 GI13046-PA 242..375 45..174 242 37 Plus
Dmoj\GI24628-PA 146 GI24628-PA 27..143 49..175 211 37.8 Plus
Dmoj\GI17697-PA 153 GI17697-PA 1..150 16..175 197 28.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:19:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14647-PA 194 GL14647-PA 12..194 6..188 905 90.7 Plus
Dper\GL26241-PA 180 GL26241-PA 8..177 10..183 266 35 Plus
Dper\GL16169-PA 214 GL16169-PA 57..167 45..154 231 39.5 Plus
Dper\GL19105-PA 171 GL19105-PA 19..168 38..183 223 33.8 Plus
Dper\GL21206-PA 186 GL21206-PA 32..185 37..188 218 32.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:19:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11405-PA 194 GA11405-PA 12..194 6..188 904 90.2 Plus
Dpse\GA28093-PA 180 GA28093-PA 8..177 10..183 264 35 Plus
Dpse\GA21567-PA 381 GA21567-PA 244..377 45..174 245 37.7 Plus
Dpse\GA22161-PA 186 GA22161-PA 32..185 37..188 218 32.3 Plus
Dpse\GA24466-PA 236 GA24466-PA 111..234 48..177 213 35.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:19:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21225-PA 100 GM21225-PA 1..100 89..188 542 99 Plus
Dsec\GM17342-PA 186 GM17342-PA 1..185 1..188 259 33.2 Plus
Dsec\GM10799-PA 184 GM10799-PA 12..175 19..177 251 37.3 Plus
Dsec\GM14393-PA 375 GM14393-PA 218..371 34..174 249 35.7 Plus
Dsec\GM17341-PA 186 GM17341-PA 32..179 37..180 208 30.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:19:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24567-PA 188 GD24567-PA 1..188 1..188 1014 100 Plus
Dsim\GD24201-PA 186 GD24201-PA 1..185 1..188 262 32.2 Plus
Dsim\GD19773-PA 184 GD19773-PA 12..175 19..177 249 37.3 Plus
Dsim\GD13601-PA 375 GD13601-PA 218..371 34..174 249 35.7 Plus
Dsim\Lectin-galC1-PA 186 GD24200-PA 32..179 37..180 220 31.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:19:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19459-PA 194 GJ19459-PA 14..194 8..188 896 87.8 Plus
Dvir\GJ12142-PA 412 GJ12142-PA 275..408 45..174 244 37 Plus
Dvir\GJ16447-PA 189 GJ16447-PA 65..186 47..175 235 34.9 Plus
Dvir\GJ24447-PA 141 GJ24447-PA 1..130 44..174 227 34.6 Plus
Dvir\GJ11333-PA 226 GJ11333-PA 95..224 46..174 222 33.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:19:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25689-PA 196 GK25689-PA 10..196 2..188 903 88.2 Plus
Dwil\GK23836-PA 283 GK23836-PA 135..283 43..187 280 40.3 Plus
Dwil\GK23834-PA 184 GK23834-PA 22..184 28..187 276 38.1 Plus
Dwil\GK23835-PA 187 GK23835-PA 40..187 44..187 253 37.4 Plus
Dwil\GK21163-PA 190 GK21163-PA 53..187 45..175 247 37 Plus
Dwil\GK23836-PA 283 GK23836-PA 12..127 28..146 198 36.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:19:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17444-PA 188 GE17444-PA 1..188 1..188 990 97.9 Plus
Dyak\GE13248-PA 186 GE13248-PA 1..185 1..188 257 34.2 Plus
Dyak\GE21136-PA 379 GE21136-PA 222..375 34..174 248 35.7 Plus
Dyak\Lectin-galC1-PA 186 GE13247-PA 32..174 37..175 199 29.7 Plus
Dyak\GE16979-PA 269 GE16979-PA 119..268 22..177 190 27.6 Plus

AT17652.hyp Sequence

Translation from 13 to 579

> AT17652.hyp
MYRTETLLLILTSVGIPSLAYLPDVNIFTNYRTEVYNGIPSEIDTTPFVR
IGDNYYYIEPMNKVNWFQAAGACRMMNAHLASIEDKPEMEALIKYMKAKG
FKNNDYFWISGNDLGTEGAFYWMSNGRPMTYAPWNGPKQMPDNYGGNENC
VHMFATREMINDANCKIQMLYVCEATEPKTFKFTYIKW*

AT17652.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:02:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG12111-PB 188 CG12111-PB 1..188 1..188 1039 100 Plus
CG12111-PA 188 CG12111-PA 1..188 1..188 1039 100 Plus
lectin-37Da-PB 186 CG33532-PB 21..179 28..180 272 36 Plus
lectin-37Da-PA 186 CG33532-PA 21..179 28..180 272 36 Plus
CG43055-PA 180 CG43055-PA 10..177 20..183 257 34.3 Plus