Clone AT17684 Report

Search the DGRC for AT17684

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:176
Well:84
Vector:pOTB7
Associated Gene/TranscriptCG41332-RA
Protein status:AT17684.pep: validated full length
Sequenced Size:1197

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2981 2002-01-01 Sim4 clustering to Release 2
CG30442 2002-02-26 Blastp of sequenced clone
CG30442 2003-01-01 Sim4 clustering to Release 3
CG41332 2008-04-29 Release 5.5 accounting

Clone Sequence Records

AT17684.complete Sequence

1197 bp (1197 high quality bases) assembled on 2002-02-26

GenBank Submission: AY089352

> AT17684.complete
AAGATCTTTTTTTTTGTAATCTTCCTCTGACTTGCTTAGTGGTAGCCGTC
TACAAGAATGAAGAGCCGATAGTCCCGCTTCGGCAATATCTGTATTATCA
ATGGAGTCTTCAAGCTGGCTCACGTGGTTGACCTTGGAAAAATGCGACAA
CTTATGGACGAAATCGCTTAAGATGCCGCTTCCTTGTAGGAAAGGAGGAT
TGAGATCTTTTTTGAGTACTCATCTCAAAGGCGCAACGGAGTGTGTTAAC
CGGATAGCCAGTGCCCCCGTGAGGAAACCTTGCTCGATAAACTGGCTGGG
ATCTGCATGGAAATGGATAGCTGGGAATCCCGACGCAGCTGACTGGAACA
CAATTCTGGCAACACAGAAGGTGCCCTTAAAGAATAGTGACCAACAACTG
AGGATTAACTCCAGACTCTTCGACGCCACCCACGAGTCAATTACGAATAA
ACGAGGCCATCGCAATAGTAATTGTCATTGATGGGGACATCTATGTGACG
ACTGCTATCCTAAACTATGCTATTATCCTTACCAACCAAGTCTCGGAAGT
CACAAGAGCTTGGCAGCTAGATAAGACGCTTGCGAGGCCTTAACAGTTGG
TGGCCGAAATTTCACGAGCTACTCAAACTGCCACTTGATGTCATTGCCGG
CCGTCCTAACACAAGTATCAGCCAACGCCAGTCTCTGGAGTAGATGCGTG
ACGCAGCATTGACTCTGCTCATCGTTTCTCTCTTGTATTTCCTGTGAAGA
AAATTGACCTCTACCTATGGACTACAGAAATTAGGCAATATTACCTTGAT
CCCGGATCCGCCTGTTACCTCCGGACAGACCAAGGCTACTTAATCTGGGC
ACTTGCTTCCCCCTCCCAACCCCGTTCGAAGCCACTATTGCAGCTGCGGG
GTAGTTCCTACCCCACCTCCATCGCAACGTCAGCACCGGACGACAGGTCA
ACGACCCTAGAGCTCTGTAGCGTACCGCTGACGACGCTGCGCGTGTGACT
GCAGCGGAATGCGATGACACCGTGGGATTTGGCTAAGCGGCCGGCAAAAC
ACTGGCCTGGCAGTCGAATTTCGGTAATGGAGCGTAGTTAACTTTTGAAT
CCAACTTTGTATTTAATCAAATTAATTAAGTCTGACTGAGTATCTAAATA
AATCGAAGATGTTACTTTGATAAAAAAAAAAAAAAAAAAAAAAAAAA

AT17684.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:23:48
Subject Length Description Subject Range Query Range Score Percent Strand
nc_4443.a 1208 nc_4443.a 1..849 1..849 4185 99.5 Plus
nc_4443.a 1208 nc_4443.a 886..1208 849..1171 1585 99.3 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:09:00
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 983517..984219 703..1 3485 99.7 Minus
chr2R 21145070 chr2R 982943..983265 1171..849 1585 99.4 Minus
chr2R 21145070 chr2R 983302..983448 849..703 720 99.3 Minus
chr2RHet 3288813 chr2RHet 1570746..1570896 222..372 440 86.1 Plus
chr3L 24539361 chr3L 23870898..23871042 847..703 425 86.2 Minus
chr2RHet 3288813 chr2RHet 1570931..1571064 445..578 415 87.3 Plus
chr2RHet 3288813 chr2RHet 2362265..2362571 239..569 400 77.5 Plus
chr2RHet 3288813 chr2RHet 1639093..1639278 399..205 380 82.1 Minus
chr3L 24539361 chr3L 23416230..23416382 896..1039 340 83 Plus
chr3L 24539361 chr3L 24111618..24111787 222..399 300 79.2 Plus
chr2RHet 3288813 chr2RHet 2371075..2371163 703..791 280 87.6 Plus
chr3RHet 2517486 chr3RHet 2072887..2072975 984..896 280 87.6 Minus
chr3RHet 2517486 chr3RHet 1786348..1786436 896..984 280 87.6 Plus
chr2RHet 3288813 chr2RHet 1571296..1571433 910..1039 265 82.7 Plus
chr2RHet 3288813 chr2RHet 1638583..1638716 837..709 260 81.3 Minus
chr3L 24539361 chr3L 23871153..23871237 667..583 245 85.9 Minus
chr2RHet 3288813 chr2RHet 1570628..1570720 81..173 240 83.9 Plus
chr2RHet 3288813 chr2RHet 2370883..2370961 583..661 230 86.1 Plus
chr3RHet 2517486 chr3RHet 1900386..1900450 783..847 220 89.2 Plus
chr3RHet 2517486 chr3RHet 2073218..2073281 677..614 215 89.1 Minus
chr3RHet 2517486 chr3RHet 1786230..1786294 783..847 205 87.7 Plus
chr3RHet 2517486 chr3RHet 1786032..1786095 614..677 200 87.5 Plus
chr3LHet 2555433 chr3LHet 2451058..2451127 973..904 200 85.7 Minus
chr3RHet 2517486 chr3RHet 2073029..2073093 847..783 190 86.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:51:56 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:08:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5096021..5096723 703..1 3485 99.7 Minus
2R 25286936 2R 5095443..5095769 1175..849 1605 99.4 Minus
2R 25286936 2R 5095806..5095952 849..703 705 98.6 Minus
2R 25286936 2R 2795671..2795821 222..372 440 86.1 Plus
3L 28110227 3L 23882004..23882148 847..703 425 86.2 Minus
2R 25286936 2R 2795856..2795989 445..578 415 87.3 Plus
2R 25286936 2R 3564433..3564739 239..569 400 77.5 Plus
2R 25286936 2R 2864053..2864238 399..205 380 82.1 Minus
3L 28110227 3L 23427314..23427466 896..1039 340 83 Plus
3L 28110227 3L 24122711..24122880 222..399 300 79.2 Plus
2R 25286936 2R 3573243..3573331 703..791 280 87.6 Plus
3R 32079331 3R 3408585..3408673 896..984 280 87.6 Plus
3R 32079331 3R 3427728..3427816 896..984 280 87.6 Plus
3R 32079331 3R 3772439..3772527 984..896 280 87.6 Minus
2R 25286936 2R 2796221..2796358 910..1039 265 82.7 Plus
2R 25286936 2R 2863543..2863676 837..709 260 81.3 Minus
3L 28110227 3L 23882259..23882343 667..583 245 85.9 Minus
2R 25286936 2R 2795553..2795645 81..173 240 83.9 Plus
2R 25286936 2R 3573051..3573129 583..661 230 86.1 Plus
3R 32079331 3R 3621803..3621867 847..783 220 89.2 Minus
3R 32079331 3R 3408279..3408342 614..677 215 89.1 Plus
3R 32079331 3R 3427422..3427485 614..677 215 89.1 Plus
3R 32079331 3R 3772581..3772645 847..783 205 87.7 Minus
3L 28110227 3L 27328131..27328200 973..904 200 85.7 Minus
3R 32079331 3R 3772780..3772843 677..614 200 87.5 Minus
3R 32079331 3R 2509868..2509906 741..703 195 100 Minus
3R 32079331 3R 2513626..2513664 741..703 195 100 Minus
3R 32079331 3R 2506047..2506111 847..783 190 86.2 Minus
3R 32079331 3R 2506141..2506178 740..703 190 100 Minus
3R 32079331 3R 2509775..2509839 847..783 190 86.2 Minus
3R 32079331 3R 2513533..2513597 847..783 190 86.2 Minus
3R 32079331 3R 3408467..3408531 783..847 190 86.2 Plus
3R 32079331 3R 3427610..3427674 783..847 190 86.2 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:53:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 5097220..5097922 703..1 3485 99.7 Minus
2R 25260384 2R 5096642..5096968 1175..849 1605 99.3 Minus
2R 25260384 2R 5097005..5097151 849..703 705 98.6 Minus
2R 25260384 2R 2795671..2795821 222..372 440 86 Plus
3L 28103327 3L 23875104..23875248 847..703 425 86.2 Minus
2R 25260384 2R 2795856..2795989 445..578 415 87.3 Plus
2R 25260384 2R 3565632..3565742 239..349 375 89.1 Plus
2R 25260384 2R 2864130..2864238 314..205 345 89 Minus
3L 28103327 3L 23420414..23420502 896..984 310 89.8 Plus
2R 25260384 2R 3574442..3574530 703..791 280 87.6 Plus
3R 31820162 3R 3089166..3089254 896..984 280 87.6 Plus
3R 31820162 3R 3070023..3070111 896..984 280 87.6 Plus
3R 31820162 3R 3433877..3433965 984..896 280 87.6 Minus
2R 25260384 2R 3565856..3565938 487..569 265 87.9 Plus
3L 28103327 3L 24115811..24115905 222..316 265 85.2 Plus
2R 25260384 2R 2863594..2863676 791..709 250 86.7 Minus
3L 28103327 3L 23875359..23875443 667..583 245 85.8 Minus
2R 25260384 2R 2795553..2795645 81..173 240 83.8 Plus
2R 25260384 2R 2607779..2607875 677..583 235 84.5 Minus
2R 25260384 2R 2601325..2601421 677..583 235 84.5 Minus
2R 25260384 2R 3574250..3574328 583..661 230 86 Plus
2R 25260384 2R 2796303..2796358 984..1039 220 92.8 Plus
3R 31820162 3R 3283241..3283305 847..783 220 89.2 Minus
3R 31820162 3R 3088860..3088923 614..677 215 89 Plus
3R 31820162 3R 3069717..3069780 614..677 215 89 Plus
3R 31820162 3R 3434019..3434083 847..783 205 87.6 Minus
3R 31820162 3R 3434218..3434281 677..614 200 87.5 Minus
3L 28103327 3L 27321231..27321300 973..904 200 85.7 Minus
3R 31820162 3R 2311204..2311242 741..703 195 100 Minus
3R 31820162 3R 2307446..2307484 741..703 195 100 Minus
3R 31820162 3R 3089048..3089112 783..847 190 86.1 Plus
3R 31820162 3R 3069905..3069969 783..847 190 86.1 Plus
3R 31820162 3R 2311111..2311175 847..783 190 86.1 Minus
3R 31820162 3R 2307353..2307417 847..783 190 86.1 Minus
3R 31820162 3R 2303625..2303689 847..783 190 86.1 Minus
3R 31820162 3R 2303719..2303756 740..703 190 100 Minus
3L 28103327 3L 24115913..24115980 332..399 190 85.2 Plus
2R 25260384 2R 2864053..2864122 399..330 185 84.2 Minus
3L 28103327 3L 24116113..24116205 713..805 180 79.5 Plus
3L 28103327 3L 23874866..23874946 1116..1036 180 81.4 Minus
2R 25260384 2R 2863471..2863526 1039..984 175 87.5 Minus
3R 31820162 3R 3283440..3283480 677..637 175 95.1 Minus
3R 31820162 3R 3434086..3434136 753..703 165 88.2 Minus
3R 31820162 3R 3088996..3089045 704..753 160 88 Plus
3R 31820162 3R 3069853..3069902 704..753 160 88 Plus
3L 28103327 3L 23420511..23420566 984..1039 160 85.7 Plus
3R 31820162 3R 3283143..3283182 935..896 155 92.5 Minus
3L 28103327 3L 24116208..24116241 814..847 155 97 Plus
2R 25260384 2R 2863794..2863832 621..583 150 92.3 Minus
3R 31820162 3R 3283308..3283358 753..703 150 86.2 Minus
3L 28103327 3L 23875926..23875967 577..536 150 90.4 Minus
2R 25260384 2R 2607127..2607182 1039..984 145 83.9 Minus
2R 25260384 2R 2600673..2600728 1039..984 145 83.9 Minus
Blast to na_te.dros performed on 2019-03-16 06:08:58 has no hits.

AT17684.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed on 2019-03-16 06:09:51 has no hits.
Sim4 to dmel-all-CDS-r5.12.fasta performed on 2008-12-08 15:11:06 has no hits.
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 19:06:34 has no hits.
Sim4 to dmel-all-transcript-r5.12.fasta performed on 2008-11-10 22:00:13 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 17:33:12 Download gff for AT17684.complete
Subject Subject Range Query Range Percent Splice Strand
CG41332-RA 102..240 439..578 85   Plus
CG41332-RA 2..44 116..158 88 == Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:09:51 Download gff for AT17684.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5095447..5095772 845..1171 98 -> Minus
2R 5095811..5095952 703..844 98 <- Minus
2R 5096022..5096723 1..702 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:09:51 Download gff for AT17684.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5095447..5095772 845..1171 98 -> Minus
2R 5095811..5095952 703..844 98 <- Minus
2R 5096022..5096723 1..702 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:09:51 Download gff for AT17684.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5095447..5095772 845..1171 98 -> Minus
2R 5095811..5095952 703..844 98 <- Minus
2R 5096022..5096723 1..702 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:10 Download gff for AT17684.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 982952..983277 845..1171 98 -> Minus
arm_2R 983316..983457 703..844 98 <- Minus
arm_2R 983527..984228 1..702 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:10 Download gff for AT17684.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 982952..983277 845..1171 98 -> Minus
arm_2R 983316..983457 703..844 98 <- Minus
arm_2R 983527..984228 1..702 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:10 Download gff for AT17684.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 982952..983277 845..1171 98 -> Minus
arm_2R 983316..983457 703..844 98 <- Minus
arm_2R 983527..984228 1..702 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:40:26 Download gff for AT17684.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5096646..5096971 845..1171 98 -> Minus
2R 5097010..5097151 703..844 98 <- Minus
2R 5097221..5097922 1..702 99   Minus

AT17684.pep Sequence

Translation from 100 to 480

> AT17684.pep
MESSSWLTWLTLEKCDNLWTKSLKMPLPCRKGGLRSFLSTHLKGATECVN
RIASAPVRKPCSINWLGSAWKWIAGNPDAADWNTILATQKVPLKNSDQQL
RINSRLFDATHESITNKRGHRNSNCH*

AT17684.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:07:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17521-PA 472 GG17521-PA 62..139 38..114 237 56.4 Plus
Dere\GG23150-PA 471 GG23150-PA 59..138 34..114 208 45.7 Plus
Dere\GG13131-PA 189 GG13131-PA 67..138 42..114 199 52.1 Plus
Dere\GG10917-PA 224 GG10917-PA 35..138 10..114 167 32.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:07:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19604-PA 611 GM19604-PA 86..138 62..114 199 60.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:07:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15084-PA 200 GE15084-PA 21..100 35..114 245 60 Plus
Dyak\GE15284-PA 482 GE15284-PA 5..84 34..114 212 46.9 Plus
Dyak\GE12971-PA 349 GE12971-PA 62..138 37..114 196 47.4 Plus
Dyak\GE11151-PA 113 GE11151-PA 1..102 10..112 159 32 Plus
Dyak\GE12958-PA 107 GE12958-PA 44..105 36..98 136 39.7 Plus

AT17684.hyp Sequence

Translation from 100 to 480

> AT17684.hyp
MESSSWLTWLTLEKCDNLWTKSLKMPLPCRKGGLRSFLSTHLKGATECVN
RIASAPVRKPCSINWLGSAWKWIAGNPDAADWNTILATQKVPLKNSDQQL
RINSRLFDATHESITNKRGHRNSNCH*
Sequence AT17684.hyp has no blast hits.