Clone AT17730 Report

Search the DGRC for AT17730

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:177
Well:30
Vector:pOTB7
Associated Gene/TranscriptCoq2-RA
Protein status:AT17730.pep: gold
Preliminary Size:1179
Sequenced Size:1628

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9613 2002-01-01 Sim4 clustering to Release 2
CG9613 2002-01-18 Blastp of sequenced clone
CG9613 2003-01-01 Sim4 clustering to Release 3
Coq2 2008-04-29 Release 5.5 accounting
Coq2 2008-08-15 Release 5.9 accounting
Coq2 2008-12-18 5.12 accounting

Clone Sequence Records

AT17730.complete Sequence

1628 bp (1628 high quality bases) assembled on 2002-01-18

GenBank Submission: AY089354

> AT17730.complete
AAACATCTTGCCATTTTTTGACTGTGCTAGTGCAAGGCAAATCGCAATGT
ATGCGCTTCGACACCTGCGACTCCAGAGCGCTAGGCACTTCCGCAGCTCT
TATGCAGCGGCGGCAACAACAAAACACATGCTGCCCCGGCAACCAGCGCG
TGTTCTGATTGGAGATTGGAGCACTTGGGATAAGTCCCGGCTGCAGGATG
TATGCTCCAGGAGTTCGAGTACCGCCACTGAGCCCGTGAAGCAGCAAACG
CCGCTGCAGGAACTCGTGTCGGCCGCCAAACCCTATGCCCAACTAATGCG
AATCGACCGGCCTATTGGCACCTACCTCCTTTTCTGGCCTTGCGCCTGGA
GCATAGCGCTCAGCGCGGATGCGGGCTGCTGGCCGGACCTCACCATGCTG
GGTCTGTTCGGCACCGGGGCACTGATAATGCGCGGCGCCGGGTGCACTAT
CAACGATCTCTGGGACAAGGACATCGATGCCAAAGTGGAGCGCACGAGGT
TGCGGCCCTTGGCCTCGGGTCAGATCAGTCAGTTCGATGCCATAGTATTC
CTCTCGGCGCAGCTCAGTCTGGGTCTTTTGGTGCTGGTCCAGCTCAACTG
GCAATCCATATTGTTGGGCGCCAGTTCGCTGGGCCTCGTGATCACGTATC
CGCTGATGAAAAGAGTCACCTACTGGCCCCAGCTGGTTCTGGGCATGGCC
TTCAATTGGGGCGCCCTACTGGGCTGGTGTGCCACCCAGGGCAGTGTCAA
CCTTGCCGCCTGCTTGCCACTCTACCTCTCCGGCGTCTGTTGGACCATTG
TCTACGACACGATATACGCCCACCAGGACAAGCTGGATGACCTGCAGATC
GGTGTGAAGTCCACGGCACTTCGATTTGGGGAGAACACCAAGGTCTGGCT
GTCGGGATTCACGGCAGCAATGCTGACGGGTCTTTCTGCCGCCGGCTGGG
CTTGCGATCAAACGGTGCCGTACTACGCGGCTGTTGGAGTAGTGGGTGCC
CATCTGGTGCAGCAGATCTATTCCCTCAACATTGACAACCCCAGCGACTG
CGCCAAAAAGTTCATATCGAACCACCAAGTAGGACTCATTCTCTTCCTCG
GCATTGTTCTGGGCACCCTTCTGAAATCAGACGAAAGCAAGAAACAGCGA
CAATCCTCACTAACAACATCGACGGCCAGCTCGTACGTTCCAGCGCTGCC
GCAAAAGCCAGAAGTTTTAAGCTGAGATGAGCCAGACGAGCGTAGATTGT
AGTGTTAAATTATGTTTATAGCGCGCTTTTTGATTCGCCAAAACCAAAGT
CTCTAGGTATCTGATTAGATAAAATCTTGTAAATAGGCTTATGACAATTT
TTAGCTCATTTGCAATAGGTTAAGTCTTAAAGAATATTACTAAGTGCACA
CCTCACTTAAACATCAATTAATTCTTAATTGTAAGTGCCCGCCTTGACGT
AAGAACTTACGTAAATCACCCATCCCCTGAGCCCTCCTAACCCATTTGAA
AAGCAAACTGGTTTCTGTATTAAATTCTTACGTGTTATTTATTATTATTA
TACAGATTTTGGTTGTCTATTGAAATTCAAATACTCTTCAAATGTAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA

AT17730.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:29:38
Subject Length Description Subject Range Query Range Score Percent Strand
Coq2-RA 1782 Coq2-RA 188..1782 1..1595 7945 99.8 Plus
eIF4AIII-RA 1598 eIF4AIII-RA 1474..1598 1596..1472 625 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:18:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4141439..4142430 1015..24 4960 100 Minus
chr3R 27901430 chr3R 4140801..4141383 1595..1013 2900 99.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:51:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:18:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8315422..8316413 1015..24 4945 99.9 Minus
3R 32079331 3R 8314783..8315366 1596..1013 2905 99.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:58:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 8056253..8057244 1015..24 4945 99.8 Minus
3R 31820162 3R 8055614..8056197 1596..1013 2905 99.8 Minus
Blast to na_te.dros performed 2019-03-15 15:18:48
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 1112..1188 1512..1588 123 65.4 Plus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 1131..1202 1517..1588 116 65.8 Plus

AT17730.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:19:34 Download gff for AT17730.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4140801..4141380 1016..1595 99 <- Minus
chr3R 4141439..4142430 24..1015 100 <- Minus
chr3R 4142490..4142512 1..23 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:11:11 Download gff for AT17730.complete
Subject Subject Range Query Range Percent Splice Strand
Coq2-RA 1..1179 47..1225 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:47:33 Download gff for AT17730.complete
Subject Subject Range Query Range Percent Splice Strand
Coq2-RA 1..1179 47..1225 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:23:33 Download gff for AT17730.complete
Subject Subject Range Query Range Percent Splice Strand
Coq2-RA 1..1179 47..1225 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:15:21 Download gff for AT17730.complete
Subject Subject Range Query Range Percent Splice Strand
Coq2-RA 1..1179 47..1225 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:01:47 Download gff for AT17730.complete
Subject Subject Range Query Range Percent Splice Strand
Coq2-RA 1..1179 47..1225 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:11:41 Download gff for AT17730.complete
Subject Subject Range Query Range Percent Splice Strand
Coq2-RA 1..1595 1..1595 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:47:33 Download gff for AT17730.complete
Subject Subject Range Query Range Percent Splice Strand
Coq2-RA 1..1595 1..1595 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:23:33 Download gff for AT17730.complete
Subject Subject Range Query Range Percent Splice Strand
Coq2-RA 49..1643 1..1595 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:15:21 Download gff for AT17730.complete
Subject Subject Range Query Range Percent Splice Strand
Coq2-RA 1..1595 1..1595 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:01:47 Download gff for AT17730.complete
Subject Subject Range Query Range Percent Splice Strand
Coq2-RA 49..1643 1..1595 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:19:34 Download gff for AT17730.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8314784..8315363 1016..1595 99 <- Minus
3R 8315422..8316413 24..1015 99 <- Minus
3R 8316473..8316495 1..23 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:19:34 Download gff for AT17730.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8314784..8315363 1016..1595 99 <- Minus
3R 8315422..8316413 24..1015 99 <- Minus
3R 8316473..8316495 1..23 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:19:34 Download gff for AT17730.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8314784..8315363 1016..1595 99 <- Minus
3R 8315422..8316413 24..1015 99 <- Minus
3R 8316473..8316495 1..23 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:23:33 Download gff for AT17730.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4140506..4141085 1016..1595 99 <- Minus
arm_3R 4141144..4142135 24..1015 99 <- Minus
arm_3R 4142195..4142217 1..23 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:49:09 Download gff for AT17730.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8055615..8056194 1016..1595 99 <- Minus
3R 8056253..8057244 24..1015 99 <- Minus
3R 8057304..8057326 1..23 100   Minus

AT17730.hyp Sequence

Translation from 1 to 1224

> AT17730.hyp
NILPFFDCASARQIAMYALRHLRLQSARHFRSSYAAAATTKHMLPRQPAR
VLIGDWSTWDKSRLQDVCSRSSSTATEPVKQQTPLQELVSAAKPYAQLMR
IDRPIGTYLLFWPCAWSIALSADAGCWPDLTMLGLFGTGALIMRGAGCTI
NDLWDKDIDAKVERTRLRPLASGQISQFDAIVFLSAQLSLGLLVLVQLNW
QSILLGASSLGLVITYPLMKRVTYWPQLVLGMAFNWGALLGWCATQGSVN
LAACLPLYLSGVCWTIVYDTIYAHQDKLDDLQIGVKSTALRFGENTKVWL
SGFTAAMLTGLSAAGWACDQTVPYYAAVGVVGAHLVQQIYSLNIDNPSDC
AKKFISNHQVGLILFLGIVLGTLLKSDESKKQRQSSLTTSTASSYVPALP
QKPEVLS*

AT17730.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:02:15
Subject Length Description Subject Range Query Range Score Percent Strand
Coq2-PA 392 CG9613-PA 1..392 16..407 2041 100 Plus

AT17730.pep Sequence

Translation from 46 to 1224

> AT17730.pep
MYALRHLRLQSARHFRSSYAAAATTKHMLPRQPARVLIGDWSTWDKSRLQ
DVCSRSSSTATEPVKQQTPLQELVSAAKPYAQLMRIDRPIGTYLLFWPCA
WSIALSADAGCWPDLTMLGLFGTGALIMRGAGCTINDLWDKDIDAKVERT
RLRPLASGQISQFDAIVFLSAQLSLGLLVLVQLNWQSILLGASSLGLVIT
YPLMKRVTYWPQLVLGMAFNWGALLGWCATQGSVNLAACLPLYLSGVCWT
IVYDTIYAHQDKLDDLQIGVKSTALRFGENTKVWLSGFTAAMLTGLSAAG
WACDQTVPYYAAVGVVGAHLVQQIYSLNIDNPSDCAKKFISNHQVGLILF
LGIVLGTLLKSDESKKQRQSSLTTSTASSYVPALPQKPEVLS*

AT17730.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:29:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16669-PA 397 GF16669-PA 1..397 1..392 1753 85.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17457-PA 392 GG17457-PA 1..392 1..392 1945 95.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17422-PA 382 GH17422-PA 14..382 18..392 1488 77.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:38:45
Subject Length Description Subject Range Query Range Score Percent Strand
Coq2-PA 392 CG9613-PA 1..392 1..392 2041 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:29:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22751-PA 383 GI22751-PA 1..383 29..392 1538 78.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:29:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24118-PA 229 GL24118-PA 143..229 303..392 280 64.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:29:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21912-PA 397 GA21912-PA 1..397 1..392 1628 82.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:29:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26350-PA 365 GM26350-PA 1..365 28..392 1872 98.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:29:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15120-PA 392 GD15120-PA 1..392 1..392 2028 98.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:29:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22752-PA 383 GJ22752-PA 1..383 29..392 1526 78.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:29:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14102-PA 400 GK14102-PA 1..400 1..392 1608 79.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:29:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24856-PA 392 GE24856-PA 1..392 1..392 1988 96.7 Plus