Clone AT17761 Report

Search the DGRC for AT17761

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:177
Well:61
Vector:pOTB7
Associated Gene/TranscriptCG12362-RA
Protein status:AT17761.pep: gold
Preliminary Size:1693
Sequenced Size:1986

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12362 2002-01-01 Sim4 clustering to Release 2
CG12362 2003-01-01 Sim4 clustering to Release 3
CG12362 2003-01-22 Blastp of sequenced clone
CG12362 2008-04-29 Release 5.5 accounting
CG12362 2008-08-15 Release 5.9 accounting
CG12362 2008-12-18 5.12 accounting

Clone Sequence Records

AT17761.complete Sequence

1986 bp (1986 high quality bases) assembled on 2003-01-22

GenBank Submission: BT003638

> AT17761.complete
CTTCAGTAGAAAAAAGAAGAAAAACACAAGAAAAAATTAATTCTTTACAT
CGAGAGTGTTCAATAGCCTCCAATACGATTCGTGGTCTGTAAAACGTTGT
TGCTGTCGTGTTTGTACCGTTTATATGAGTCTCTATTCCATCAGGCCCAT
AAAAGACATCAAATGTTTTAGATCCGGTGTTATAAATTCCAAAAAAAATT
CTAACCACATGCTGGTAATATGAATTCCGAAATGGAATTCTCGGATGAGG
ACCACGGTGACTCGCATCGGTCGCTTCTCACTCACATGAGTTGCGAAAAT
GACAGCGACAGCGAGGACACCTGCACGGAAATCCTTTTGCCGGAAAATTC
CAACAGTCCCGAAACGGAGGACTTTGTGTACAAGGTCCTTTCGGTGGACC
AGATTGTTCAGCATCAGCGTAACATCATCGATGAGGTGAATAATGTCCTG
AATTTGCCACCGCAAGTCACGCGTATTATCCTAAATCACTTCAAATGGGA
CAAAGAGAGCTTGTTCGAAAATTATTTCGAGAGCAATCCGAAGGACTTCT
TTCAGCGTGCCCATGTGTTGAATCCCTTTGAGAAGAAGATTGAACGCGAG
TCTGCGGCGTCTACATCCTGTGCCATACCTCAGCTCTGTGGCATTTGCTT
TTGTTCTTGCGATGAGCTCATAGGTTTGGGCTGTGGTCACAACTTTTGTG
CCGCCTGCTGGAAACAATATTTGGCCAATAAGACGTGTAGCGAGGGCTTG
GCCAATACCATCAAATGTCCAGCGGCCAACTGCGAGATCCTGGTGGATTA
TATATCCTTTCTGAAACTTGCCGATGATTCAGAGGTTGTCGAGCGATATC
AGCAGCTCATCACCAACACGTTTGTGGAATGCAACATGCTGATGCGATGG
TGCCCCGCCCCCAATTGCAGCCATGCCGTCAAGGCCGTTTGTGCTGAACC
ACGAGCAGTCCTTTGCAAATGTGGGCATGAGTTTTGCTTTGCTTGTGGCG
AAAATTGGCATGAACCCGCCAGCTGCAGTTCGCTCAAGAAGTGGGTGAAA
AAATGTCTTGAGGACTCGGAGACATCGAATTGGATTGCCCAGAACACGAA
GGAGTGTCCCAAGTGCAATGTTACCATCGAGAAGGATGGTGGTTGCAATC
ATATGGTATGCAAGAATCCATCCTGCCGTTATGATTTCTGCTGGGTATGC
CTTGGATCCTGGGAGCCACATGGTTCGTCCTGGTACAGTTGCAATCGCTT
CGACGAGGAGGAAGCGAAACAGGCCAGATTGGCTCAGCAAAAATATCGCT
CTTCAATGGCCCGATATCTGCACTATTACAATCGTTATAGCAACCACATG
CAAAGTTTGAAAATGGAAAATAAATTATATTCCAATATTCAGGCCAAAAT
GGATGACATGCAGGAGGAGATGAGCTGGATTGAGGTTCAGTTTCTGCGTG
ATGCCGTCGATGTCTTATGCCAATGTCGAACCACTCTGATGTACAGCTAT
GTGTTTGCATTTTATTTGATGAACAACAATCAGAAGATCATATTCGAGGA
TAATCAGAAGGACATGGAAATGGCCACAGAAAAGCTGTCCGAGTGCTTGG
AGCGAGAGATCACTGTCAAGAATATCTATGAAGTTAAACAAAAGGTTCTG
GACTTATCGCACTATTGCCAAAAACGACGACATGTCCTCCTTTGCCATGT
GAGGGAGGGATACGAAAATGACTGGTGGGAATTTAAAGAAGAGACCACTA
CATAAATCGTATAATCCAATGACATCTGTATTCGATGAACAACATAACAA
TAATGGAAATTAATACTGAAGACTTTATAAGAAACGCACACAGTAAATCT
TTCGGTTTTCACTCGGGTTGAACTGATGACTCTTCAGTTCACTGGATAAA
TATTTTTCAAAATTTACAGTTTTTATACACGAATAGAAAAATATAAACAA
TAAGAAAACACCAAAAAAAAAAAAAAAAAAAAAAAA

AT17761.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:25:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG12362-RB 1962 CG12362-RB 3..1961 1..1964 9690 99.6 Plus
CG12362-RA 1949 CG12362-RA 133..1948 144..1964 8975 99.6 Plus
CG12362-RA 1949 CG12362-RA 50..134 1..85 425 100 Plus
ari-1.b 2587 ari-1.b 1139..1347 958..1166 325 77 Plus
ari-1.b 2587 ari-1.b 1667..1752 1483..1568 190 81.3 Plus
ari-1.b 2587 ari-1.b 1367..1440 1186..1259 190 83.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:34:14
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 10404344..10406300 1..1962 9505 99.1 Plus
chrX 22417052 chrX 18023071..18023480 1259..850 490 74.6 Minus
chrX 22417052 chrX 18022359..18022444 1568..1483 190 81.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:52:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:34:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10412818..10414776 1..1964 9680 99.6 Plus
X 23542271 X 18133765..18134174 1259..850 490 74.6 Minus
X 23542271 X 18133053..18133138 1568..1483 190 81.4 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:02:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 10405918..10407876 1..1964 9690 99.6 Plus
X 23527363 X 18141956..18142164 1166..958 325 77 Minus
X 23527363 X 18141863..18141936 1259..1186 190 83.7 Minus
X 23527363 X 18141151..18141236 1568..1483 190 81.3 Minus
Blast to na_te.dros performed 2019-03-16 08:34:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6386..6524 735..596 130 58.7 Minus

AT17761.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:34:52 Download gff for AT17761.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 10404344..10406300 1..1962 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:11:14 Download gff for AT17761.complete
Subject Subject Range Query Range Percent Splice Strand
CG12362-RA 1..1536 220..1755 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:55:32 Download gff for AT17761.complete
Subject Subject Range Query Range Percent Splice Strand
CG12362-RA 1..1536 220..1755 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:52:41 Download gff for AT17761.complete
Subject Subject Range Query Range Percent Splice Strand
CG12362-RB 1..1536 220..1755 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:46:31 Download gff for AT17761.complete
Subject Subject Range Query Range Percent Splice Strand
CG12362-RA 1..1536 220..1755 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:44:15 Download gff for AT17761.complete
Subject Subject Range Query Range Percent Splice Strand
CG12362-RB 1..1536 220..1755 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:10:55 Download gff for AT17761.complete
Subject Subject Range Query Range Percent Splice Strand
CG12362-RB 3..1959 1..1962 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:55:32 Download gff for AT17761.complete
Subject Subject Range Query Range Percent Splice Strand
CG12362-RB 3..1959 1..1962 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:52:41 Download gff for AT17761.complete
Subject Subject Range Query Range Percent Splice Strand
CG12362-RB 1..1957 1..1962 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:46:31 Download gff for AT17761.complete
Subject Subject Range Query Range Percent Splice Strand
CG12362-RB 3..1959 1..1962 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:44:15 Download gff for AT17761.complete
Subject Subject Range Query Range Percent Splice Strand
CG12362-RB 1..1957 1..1962 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:34:52 Download gff for AT17761.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10412818..10414774 1..1962 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:34:52 Download gff for AT17761.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10412818..10414774 1..1962 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:34:52 Download gff for AT17761.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10412818..10414774 1..1962 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:52:41 Download gff for AT17761.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10405918..10407874 1..1962 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:17:40 Download gff for AT17761.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10405918..10407874 1..1962 99   Plus

AT17761.hyp Sequence

Translation from 219 to 1754

> AT17761.hyp
MNSEMEFSDEDHGDSHRSLLTHMSCENDSDSEDTCTEILLPENSNSPETE
DFVYKVLSVDQIVQHQRNIIDEVNNVLNLPPQVTRIILNHFKWDKESLFE
NYFESNPKDFFQRAHVLNPFEKKIERESAASTSCAIPQLCGICFCSCDEL
IGLGCGHNFCAACWKQYLANKTCSEGLANTIKCPAANCEILVDYISFLKL
ADDSEVVERYQQLITNTFVECNMLMRWCPAPNCSHAVKAVCAEPRAVLCK
CGHEFCFACGENWHEPASCSSLKKWVKKCLEDSETSNWIAQNTKECPKCN
VTIEKDGGCNHMVCKNPSCRYDFCWVCLGSWEPHGSSWYSCNRFDEEEAK
QARLAQQKYRSSMARYLHYYNRYSNHMQSLKMENKLYSNIQAKMDDMQEE
MSWIEVQFLRDAVDVLCQCRTTLMYSYVFAFYLMNNNQKIIFEDNQKDME
MATEKLSECLEREITVKNIYEVKQKVLDLSHYCQKRRHVLLCHVREGYEN
DWWEFKEETTT*

AT17761.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:02:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG12362-PA 511 CG12362-PA 1..511 1..511 2833 100 Plus
CG12362-PB 511 CG12362-PB 1..511 1..511 2833 100 Plus
ari-1-PF 503 CG5659-PF 22..503 28..507 1673 61 Plus
ari-1-PE 503 CG5659-PE 22..503 28..507 1673 61 Plus
ari-1-PD 503 CG5659-PD 22..503 28..507 1673 61 Plus

AT17761.pep Sequence

Translation from 219 to 1754

> AT17761.pep
MNSEMEFSDEDHGDSHRSLLTHMSCENDSDSEDTCTEILLPENSNSPETE
DFVYKVLSVDQIVQHQRNIIDEVNNVLNLPPQVTRIILNHFKWDKESLFE
NYFESNPKDFFQRAHVLNPFEKKIERESAASTSCAIPQLCGICFCSCDEL
IGLGCGHNFCAACWKQYLANKTCSEGLANTIKCPAANCEILVDYISFLKL
ADDSEVVERYQQLITNTFVECNMLMRWCPAPNCSHAVKAVCAEPRAVLCK
CGHEFCFACGENWHEPASCSSLKKWVKKCLEDSETSNWIAQNTKECPKCN
VTIEKDGGCNHMVCKNPSCRYDFCWVCLGSWEPHGSSWYSCNRFDEEEAK
QARLAQQKYRSSMARYLHYYNRYSNHMQSLKMENKLYSNIQAKMDDMQEE
MSWIEVQFLRDAVDVLCQCRTTLMYSYVFAFYLMNNNQKIIFEDNQKDME
MATEKLSECLEREITVKNIYEVKQKVLDLSHYCQKRRHVLLCHVREGYEN
DWWEFKEETTT*

AT17761.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:31:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10593-PA 522 GF10593-PA 1..522 1..511 2303 81.6 Plus
Dana\GF20323-PA 504 GF20323-PA 31..504 37..507 1610 61.6 Plus
Dana\GF12618-PA 509 GF12618-PA 27..501 31..491 697 31.6 Plus
Dana\GF10184-PA 468 GF10184-PA 264..468 157..340 184 29.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:31:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15432-PA 511 GG15432-PA 1..511 1..511 2664 96.5 Plus
Dere\GG18141-PA 504 GG18141-PA 31..504 37..507 1616 62.5 Plus
Dere\GG22175-PA 511 GG22175-PA 1..503 1..491 701 30.8 Plus
Dere\GG13257-PA 468 GG13257-PA 264..468 157..340 183 28.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:31:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14942-PA 510 GH14942-PA 1..510 1..507 2009 72.5 Plus
Dgri\GH24087-PA 507 GH24087-PA 31..507 37..507 1612 62.8 Plus
Dgri\GH21451-PA 528 GH21451-PA 27..518 31..491 681 30.6 Plus
Dgri\GH16528-PA 464 GH16528-PA 260..464 157..340 194 27.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG12362-PA 511 CG12362-PA 1..511 1..511 2833 100 Plus
CG12362-PB 511 CG12362-PB 1..511 1..511 2833 100 Plus
ari-1-PF 503 CG5659-PF 22..503 28..507 1673 61 Plus
ari-1-PE 503 CG5659-PE 22..503 28..507 1673 61 Plus
ari-1-PD 503 CG5659-PD 22..503 28..507 1673 61 Plus
ari-1-PC 503 CG5659-PC 22..503 28..507 1673 61 Plus
ari-1-PB 503 CG5659-PB 22..503 28..507 1673 61 Plus
ari-1-PA 503 CG5659-PA 22..503 28..507 1673 61 Plus
ari-2-PA 509 CG5709-PA 1..501 1..491 741 31.3 Plus
park-PC 482 CG10523-PC 259..481 140..339 214 27.3 Plus
park-PB 482 CG10523-PB 259..481 140..339 214 27.3 Plus
LUBEL-PJ 2798 CG11321-PJ 2416..2626 136..327 180 26.4 Plus
LUBEL-PI 2839 CG11321-PI 2457..2667 136..327 180 26.4 Plus
LUBEL-PG 2851 CG11321-PG 2469..2679 136..327 180 26.4 Plus
LUBEL-PE 2892 CG11321-PE 2510..2720 136..327 180 26.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:31:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11465-PA 510 GI11465-PA 1..510 1..507 2110 76.8 Plus
Dmoj\GI15200-PA 505 GI15200-PA 23..505 30..507 1594 61 Plus
Dmoj\GI19927-PA 527 GI19927-PA 27..517 31..491 672 30.6 Plus
Dmoj\GI12208-PA 464 GI12208-PA 260..464 157..340 189 29.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:31:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26892-PA 503 GL26892-PA 31..503 37..507 1600 61.8 Plus
Dper\GL17530-PA 520 GL17530-PA 1..509 1..491 697 31 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:31:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11583-PA 528 GA11583-PA 1..519 1..508 1940 68.8 Plus
Dpse\GA22657-PB 504 GA22657-PB 44..504 48..507 1593 62.7 Plus
Dpse\GA19075-PA 520 GA19075-PA 1..509 1..491 697 31 Plus
Dpse\GA19075-PB 320 GA19075-PB 1..310 139..446 618 37.1 Plus
Dpse\GA10370-PA 471 GA10370-PA 267..471 157..340 195 28.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:31:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25208-PA 507 GM25208-PA 1..507 5..511 2669 97.2 Plus
Dsec\GM22833-PA 504 GM22833-PA 31..504 37..507 1616 62.3 Plus
Dsec\GM15896-PA 509 GM15896-PA 1..501 1..491 705 30.9 Plus
Dsec\GM22162-PA 468 GM22162-PA 264..468 157..340 183 28 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:31:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14237-PA 341 GD14237-PA 1..336 5..340 1741 95.5 Plus
Dsim\GD11654-PA 509 GD11654-PA 1..501 1..491 704 30.9 Plus
Dsim\GD14238-PA 111 GD14238-PA 1..111 401..511 591 100 Plus
Dsim\GD12138-PA 482 GD12138-PA 278..482 157..340 184 28 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:31:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13659-PA 510 GJ13659-PA 1..510 1..507 2125 77.2 Plus
Dvir\GJ16609-PA 507 GJ16609-PA 31..507 37..507 1607 62.6 Plus
Dvir\GJ15094-PA 518 GJ15094-PA 27..508 31..491 676 31.7 Plus
Dvir\GJ11442-PA 467 GJ11442-PA 263..467 157..340 196 29.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:31:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24041-PA 517 GK24041-PA 1..510 1..508 2102 75.2 Plus
Dwil\GK16299-PA 507 GK16299-PA 31..507 37..507 1618 62.5 Plus
Dwil\GK20805-PA 526 GK20805-PA 1..518 1..491 671 30.2 Plus
Dwil\GK17374-PA 470 GK17374-PA 266..470 157..340 190 28.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:31:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21740-PA 511 GE21740-PA 1..511 1..511 2656 95.7 Plus
Dyak\GE15551-PA 504 GE15551-PA 31..504 37..507 1610 62.3 Plus
Dyak\GE14168-PA 511 GE14168-PA 1..503 1..491 701 30.8 Plus
Dyak\GE22356-PA 548 GE22356-PA 376..548 154..340 165 27.1 Plus