Clone AT17975 Report

Search the DGRC for AT17975

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:179
Well:75
Vector:pOTB7
Associated Gene/TranscriptAdk1-RA
Protein status:AT17975.pep: gold
Preliminary Size:799
Sequenced Size:1163

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17146 2002-01-01 Sim4 clustering to Release 2
CG17146 2002-05-31 Blastp of sequenced clone
CG17146 2003-01-01 Sim4 clustering to Release 3
Adk1 2008-04-29 Release 5.5 accounting
Adk1 2008-08-15 Release 5.9 accounting
Adk1 2008-12-18 5.12 accounting

Clone Sequence Records

AT17975.complete Sequence

1163 bp (1163 high quality bases) assembled on 2002-05-31

GenBank Submission: AY118287

> AT17975.complete
AATTGACCAATTCGGGTTATACTCGAAAACGGCCAAAATAAAAGCACTGT
TAATCGGAAAGCTTTGTGCGAAAAGCTCGCGTGTCTGTGCGCAGTGAAAC
CGTTAGCCGAATCGGATCGAATCGAAACGGAATCGAAAGCCTTTTCATTC
ACTCAGTCACTCTCAACTCACGCAGCACAGAGGGTGGGTGGAAAACAGTC
GGGCGGAGCATTCGAGAATCTGGGCGAGAATCGACCGACCAAGTGGCGCT
AAGGGAAGGCTAGTAAGGCATCCGGCTAACAAACTACCGAATATTTCGCG
ATTTCTTCAGCGAAAGGCCCGCAGCAGCGACGTGTATATCTAGTATACAT
CATCATCATCATGGCTGATATACCCATCATCTGGATCTTGGGTGGACCCG
GGTGCGGCAAGGGCACTCAGTGCGCCAAAATCGTGGAAAAATACGGATTC
ACACATCTGAGCAGCGGCGATTTGCTGCGCAATGAGGTGGCTTCTGGATC
GGACAAGGGTCGTCAGCTGCAGGCTGTGATGGCCAGCGGTGGCCTGGTGT
CCAACGACGAGGTGCTGTCCCTGCTGAACGACGCCATCACGCGGGCCAAG
GGTAGCTCGAAGGGATTCCTCATCGATGGATATCCGCGTCAGAAGAACCA
GGGCATTGAGTTCGAGGCGCGCATTGCACCCGCCGATCTGGCGCTGTACT
TTGAGTGCTCCGAGGACACGATGGTGCAGCGCATCATGGCACGTGCCGCT
GCCTCGGCGGTGAAACGGGACGATGACAACGAGAAGACCATTAGGGCACG
CCTCCTGACCTTCAAGCAGAACACCAATGCAATTTTGGAACTTTATGAGC
CCAAGACCCTTACGATCAATGCCGAGCGTGACGTGGACGACATCTTTCTG
GAAGTCGTCCAGGCCATTGACTGTGTGCTGAAGAAGAAGCAGCAGAATGC
CGCCGCCCAGTGCTAGTAGAATGCTAATCCATTAGGAAACCGGTACCAAA
GTCAACATTTCTAGTGCACTTTTTAGCGCGAAACACACAATCTCAGAGCT
GAGCACAAATGAATGCGAAACACCAAATAAATTAGTCTAAATCTATGTTA
TGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA

AT17975.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:56:05
Subject Length Description Subject Range Query Range Score Percent Strand
Adk1-RA 1457 Adk1-RA 140..1244 1..1105 5510 99.9 Plus
Adk1.a 1019 Adk1.a 113..855 363..1105 3700 99.8 Plus
Adk1-RB 1541 Adk1-RB 587..1328 364..1105 3695 99.8 Plus
Adk1-RB 1541 Adk1-RB 140..502 1..363 1815 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:14:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 12191447..12191826 864..485 1885 99.7 Minus
chr3L 24539361 chr3L 12194462..12194825 364..1 1820 100 Minus
chr3L 24539361 chr3L 12191134..12191374 1104..864 1190 99.6 Minus
chr3L 24539361 chr3L 12192107..12192232 488..363 630 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:52:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:14:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12200712..12201091 864..485 1885 99.7 Minus
3L 28110227 3L 12203718..12204081 364..1 1820 100 Minus
3L 28110227 3L 12200398..12200639 1105..864 1210 100 Minus
3L 28110227 3L 12201372..12201497 488..363 630 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:28:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 12193812..12194191 864..485 1885 99.7 Minus
3L 28103327 3L 12196818..12197181 364..1 1820 100 Minus
3L 28103327 3L 12193498..12193739 1105..864 1210 100 Minus
3L 28103327 3L 12194472..12194597 488..363 630 100 Minus
Blast to na_te.dros performed on 2019-03-15 15:14:47 has no hits.

AT17975.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:15:42 Download gff for AT17975.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 12191134..12191373 865..1104 99 <- Minus
chr3L 12191447..12191824 487..864 99 <- Minus
chr3L 12192109..12192231 364..486 100 <- Minus
chr3L 12194463..12194825 1..363 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:11:32 Download gff for AT17975.complete
Subject Subject Range Query Range Percent Splice Strand
Adk1-RA 1..606 361..966 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:34:31 Download gff for AT17975.complete
Subject Subject Range Query Range Percent Splice Strand
Adk1-RA 1..606 361..966 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:08:47 Download gff for AT17975.complete
Subject Subject Range Query Range Percent Splice Strand
Adk1-RA 1..606 361..966 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:26:07 Download gff for AT17975.complete
Subject Subject Range Query Range Percent Splice Strand
Adk1-RA 1..606 361..966 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:32:44 Download gff for AT17975.complete
Subject Subject Range Query Range Percent Splice Strand
Adk1-RA 1..606 361..966 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:05:44 Download gff for AT17975.complete
Subject Subject Range Query Range Percent Splice Strand
Adk1-RA 2..1105 1..1104 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:34:31 Download gff for AT17975.complete
Subject Subject Range Query Range Percent Splice Strand
Adk1-RA 2..1105 1..1104 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:08:47 Download gff for AT17975.complete
Subject Subject Range Query Range Percent Splice Strand
Adk1-RA 1..958 147..1104 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:26:07 Download gff for AT17975.complete
Subject Subject Range Query Range Percent Splice Strand
Adk1-RA 2..1105 1..1104 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:32:44 Download gff for AT17975.complete
Subject Subject Range Query Range Percent Splice Strand
Adk1-RA 1..958 147..1104 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:15:42 Download gff for AT17975.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12200399..12200638 865..1104 100 <- Minus
3L 12200712..12201089 487..864 99 <- Minus
3L 12201374..12201496 364..486 100 <- Minus
3L 12203719..12204081 1..363 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:15:42 Download gff for AT17975.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12200399..12200638 865..1104 100 <- Minus
3L 12200712..12201089 487..864 99 <- Minus
3L 12201374..12201496 364..486 100 <- Minus
3L 12203719..12204081 1..363 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:15:42 Download gff for AT17975.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12200399..12200638 865..1104 100 <- Minus
3L 12200712..12201089 487..864 99 <- Minus
3L 12201374..12201496 364..486 100 <- Minus
3L 12203719..12204081 1..363 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:08:47 Download gff for AT17975.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12196819..12197181 1..363 100   Minus
arm_3L 12193499..12193738 865..1104 100 <- Minus
arm_3L 12193812..12194189 487..864 99 <- Minus
arm_3L 12194474..12194596 364..486 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:58:32 Download gff for AT17975.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12193812..12194189 487..864 99 <- Minus
3L 12193499..12193738 865..1104 100 <- Minus
3L 12194474..12194596 364..486 100 <- Minus
3L 12196819..12197181 1..363 100   Minus

AT17975.hyp Sequence

Translation from 360 to 965

> AT17975.hyp
MADIPIIWILGGPGCGKGTQCAKIVEKYGFTHLSSGDLLRNEVASGSDKG
RQLQAVMASGGLVSNDEVLSLLNDAITRAKGSSKGFLIDGYPRQKNQGIE
FEARIAPADLALYFECSEDTMVQRIMARAAASAVKRDDDNEKTIRARLLT
FKQNTNAILELYEPKTLTINAERDVDDIFLEVVQAIDCVLKKKQQNAAAQ
C*

AT17975.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:02:41
Subject Length Description Subject Range Query Range Score Percent Strand
Adk1-PA 201 CG17146-PA 1..201 1..201 1018 100 Plus
Adk1-PB 229 CG17146-PB 30..229 2..201 1013 100 Plus
Dak1-PA 253 CG6092-PA 65..244 6..182 288 36.6 Plus
Adk2-PA 240 CG3140-PA 23..234 9..194 238 29 Plus
CG9541-PC 616 CG9541-PC 328..491 5..176 165 28.4 Plus

AT17975.pep Sequence

Translation from 360 to 965

> AT17975.pep
MADIPIIWILGGPGCGKGTQCAKIVEKYGFTHLSSGDLLRNEVASGSDKG
RQLQAVMASGGLVSNDEVLSLLNDAITRAKGSSKGFLIDGYPRQKNQGIE
FEARIAPADLALYFECSEDTMVQRIMARAAASAVKRDDDNEKTIRARLLT
FKQNTNAILELYEPKTLTINAERDVDDIFLEVVQAIDCVLKKKQQNAAAQ
C*

AT17975.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:39:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24995-PA 223 GF24995-PA 25..223 3..201 880 85.9 Plus
Dana\GF18220-PA 196 GF18220-PA 8..187 6..182 294 36.6 Plus
Dana\GF24994-PA 555 GF24994-PA 368..550 1..195 253 28.2 Plus
Dana\GF12891-PA 240 GF12891-PA 23..234 9..194 243 29 Plus
Dana\GF18267-PA 218 GF18267-PA 10..186 9..163 195 27.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:39:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13846-PA 219 GG13846-PA 21..219 2..201 1004 95 Plus
Dere\GG12202-PA 196 GG12202-PA 8..187 6..182 288 36.1 Plus
Dere\GG13845-PA 555 GG13845-PA 369..550 1..195 256 28.2 Plus
Dere\GG22922-PA 240 GG22922-PA 23..234 9..194 243 29 Plus
Dere\GG17252-PA 216 GG17252-PA 10..191 9..168 165 24.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:39:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15260-PA 222 GH15260-PA 24..221 2..199 794 80.3 Plus
Dgri\GH18143-PA 197 GH18143-PA 8..191 6..190 274 35.1 Plus
Dgri\GH21708-PA 238 GH21708-PA 23..238 9..197 249 30.3 Plus
Dgri\GH19429-PA 217 GH19429-PA 10..206 9..182 197 27 Plus
Dgri\GH25120-PA 972 GH25120-PA 687..834 5..160 169 31.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:57
Subject Length Description Subject Range Query Range Score Percent Strand
Adk1-PA 201 CG17146-PA 1..201 1..201 1018 100 Plus
Adk1-PB 229 CG17146-PB 30..229 2..201 1013 100 Plus
Dak1-PA 253 CG6092-PA 65..244 6..182 288 36.6 Plus
Adk2-PA 240 CG3140-PA 23..234 9..194 238 29 Plus
CG9541-PC 616 CG9541-PC 328..491 5..176 165 28.4 Plus
CG9541-PD 646 CG9541-PD 358..521 5..176 165 28.4 Plus
Adk3-PD 216 CG6612-PD 10..190 9..167 154 23.4 Plus
Adk3-PC 216 CG6612-PC 10..190 9..167 154 23.4 Plus
Adk3-PA 216 CG6612-PA 10..190 9..167 154 23.4 Plus
Adk3-PB 216 CG6612-PB 10..190 9..167 154 23.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:39:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11969-PA 225 GI11969-PA 26..222 1..197 863 80.2 Plus
Dmoj\GI22905-PA 197 GI22905-PA 8..187 6..182 302 36.6 Plus
Dmoj\GI20701-PA 240 GI20701-PA 23..232 9..192 247 29.8 Plus
Dmoj\GI22633-PA 217 GI22633-PA 10..206 9..182 203 26.5 Plus
Dmoj\GI12486-PA 224 GI12486-PA 1..175 10..162 173 24.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:39:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25010-PA 225 GL25010-PA 23..225 2..201 872 84.8 Plus
Dper\GL12997-PA 193 GL12997-PA 10..189 6..182 302 36.1 Plus
Dper\GL22014-PA 249 GL22014-PA 61..240 6..182 282 35.3 Plus
Dper\GL25009-PA 539 GL25009-PA 369..531 1..193 251 28 Plus
Dper\GL11651-PA 222 GL11651-PA 5..205 9..179 246 30.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:39:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14347-PA 229 GA14347-PA 27..227 2..198 866 84.6 Plus
Dpse\GA23172-PA 198 GA23172-PA 10..193 6..186 295 35.8 Plus
Dpse\GA19345-PA 249 GA19345-PA 61..240 6..182 282 35.3 Plus
Dpse\GA16231-PA 240 GA16231-PA 23..223 9..179 247 30.7 Plus
Dpse\GA19014-PA 539 GA19014-PA 369..531 1..193 245 27.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:39:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24672-PA 220 GM24672-PA 21..220 2..201 1051 98.5 Plus
Dsec\GM10200-PA 253 GM10200-PA 65..244 6..182 299 36.1 Plus
Dsec\GM18289-PA 240 GM18289-PA 23..234 9..194 240 28.6 Plus
Dsec\GM16084-PA 240 GM16084-PA 23..234 9..194 240 28.6 Plus
Dsec\GM24671-PA 507 GM24671-PA 367..458 1..92 224 39.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:39:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12741-PA 206 GD12741-PA 21..188 2..169 884 98.2 Plus
Dsim\GD18150-PA 253 GD18150-PA 65..244 6..182 298 36.1 Plus
Dsim\GD12739-PA 188 GD12739-PA 4..183 3..195 242 28 Plus
Dsim\GD11825-PA 240 GD11825-PA 23..234 9..194 240 28.6 Plus
Dsim\GD20690-PA 209 GD20690-PA 10..184 9..168 154 23 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:39:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12193-PA 225 GJ12193-PA 26..222 1..197 875 81.7 Plus
Dvir\GJ23317-PA 197 GJ23317-PA 8..187 6..182 314 39.3 Plus
Dvir\GJ12192-PA 561 GJ12192-PA 377..552 1..192 251 29.7 Plus
Dvir\GJ20444-PA 240 GJ20444-PA 23..233 9..193 243 29.2 Plus
Dvir\GJ23879-PA 217 GJ23879-PA 10..206 9..182 203 26.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:39:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13248-PA 219 GK13248-PA 23..219 2..198 835 80.7 Plus
Dwil\GK12802-PA 196 GK12802-PA 8..187 6..182 315 38.8 Plus
Dwil\GK21378-PA 240 GK21378-PA 23..236 9..196 243 28.3 Plus
Dwil\GK13237-PA 262 GK13237-PA 177..262 5..90 222 43 Plus
Dwil\GK13283-PA 217 GK13283-PA 10..206 9..182 192 25.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:39:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20139-PA 225 GE20139-PA 27..225 2..201 1010 95.5 Plus
Dyak\GE10646-PA 196 GE10646-PA 8..187 6..182 295 36.1 Plus
Dyak\GE20138-PA 524 GE20138-PA 338..519 1..195 253 27.2 Plus
Dyak\GE14359-PA 240 GE14359-PA 23..234 9..194 237 28.6 Plus
Dyak\GE24653-PA 216 GE24653-PA 10..193 9..170 178 25.1 Plus