Clone AT18092 Report

Search the DGRC for AT18092

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:180
Well:92
Vector:pOTB7
Associated Gene/TranscriptCG6084-RB
Protein status:AT18092.pep: gold
Preliminary Size:1355
Sequenced Size:1354

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6084 2004-01-09 Blastp of sequenced clone
CG6084 2008-04-29 Release 5.5 accounting
CG6084 2008-08-15 Release 5.9 accounting
CG6084 2008-12-18 5.12 accounting

Clone Sequence Records

AT18092.complete Sequence

1354 bp (1354 high quality bases) assembled on 2004-01-09

GenBank Submission: BT011413

> AT18092.complete
ATTTACTGGAGTGCAAAATGAACACTCTAATGAAAATTCAATTGGTTAGG
CCTGTTTTTCGCATTACGTTGAGGAATTATGGGAAACCAGAGCGATTTAT
GTGGTGTCAGAAGGAGTATGCTAGAGCTCCCAAGGTGGTTTGCTTGGACG
GAAATGAGATTCCAGTAATTGGGCTCGGAACTTTCAATAGCCCCAAGGGT
CAGGTCACCGAGGCTGTCAAAGTTGCCATTGATGCCGGATACAGGCACAT
TGACTGTGCCTATGTATACCAAAACGAGGATGAGGTCGGAGATGGTGTTG
AGGCCAAGATCAAGGAGGGCGTTGTCAAGCGTGAGGATCTGTTCATCACC
AGCAAACTGTGGAACACTTTCCATCGCCCGGATCTTGTCAAGTCGGCATT
GGAGAACACATTGAGCTCCCTGAAGCTGAAGTACCTCGATCTGTACCTTA
TCCACTGGCCCATGGGCTACAAGGAGGGATGCGATCTGTTCCCCACCGAC
AAGGATGGCAAGACGCTGTACTCGCCGGTTGATTACGTCGACACGTGGAA
GGCCATGGAGAAGTTGGTGGAAGAGGGTCTGGTCAAGTCCATTGGTGTTT
CCAACTTCAACAGAAGGCAGATCGAGCGCGTGCTTGAGGTGGCCACTATT
CCACCAGTAACCAATCAGATTGAGTGCCATCCATATCTGACCCAGAAGAA
GCTGATTGACTTCTGCAAGTCAAAGGACATTACAATCACTGCCTACAGTC
CCTTGGGATCTCCCAACCGCCCATGGGCCAAGGCTGGTGATCCGGTCATC
CTAGAGGAGGCTAAGATCAAGGAAATTGCCGCTAAGAAGAAGAAGACCCC
TGGACAGATCCTTATTCGATACCAAGTTCAGCGTGCCAACATTGTTATCC
CCAAATCTGTGACCAAGGACCGCATCGAGTCCAACTTCCAGGTCTTCGAC
TTCGAACTGACACCTGAGGAAATCGAAATCATCGAAAGCTTCGAGTGCAA
CGGCCGCCTTGTTCCCCTACTCAAGGATGCTGGTACCCATAAGTACTATC
CGTTCCATGACGAGTATTAGGCCTTAAGAAACTTATATCTCAAGAGCAAG
AAGAATTCGAATGAATGAAAAATTATACCTATTGGAAAGGGAAACGCTTA
CGAAGAAAAAATCAAAAAGTTTACTGGTCTATATAAACATGAACATGAGT
TCAACCCAATACGGTCACCCTCACCACCCTTTCGAGAAGGACGAATACTA
GAAAGCGACACAGTGCTCGGTTCAAATCTATAATTTGTTGCATAATCATT
TTATCTTTAATCGTACGAATAAACAAAAATACAAATAAAAAAAAAAAAAA
AAAA

AT18092.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:12:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG6084-RB 1471 CG6084-RB 39..1376 1..1338 6645 99.7 Plus
CG6084.b 1454 CG6084.b 189..1338 189..1338 5720 99.8 Plus
CG6084.a 1232 CG6084.a 60..1083 1..1024 5090 99.8 Plus
CG6084.a 1232 CG6084.a 1084..1216 1206..1338 665 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:44:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 11612400..11612884 815..331 2395 99.6 Minus
chr3L 24539361 chr3L 11612130..11612341 1025..814 1030 99.1 Minus
chr3L 24539361 chr3L 11611840..11612024 1205..1021 895 98.9 Minus
chr3L 24539361 chr3L 11612950..11613092 331..189 700 99.3 Minus
chr3L 24539361 chr3L 11611448..11611578 1336..1206 625 98.5 Minus
chr3L 24539361 chr3L 11615166..11615270 105..1 510 99 Minus
chr3L 24539361 chr3L 11615020..11615105 188..103 415 98.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:52:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:44:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11621483..11621967 815..331 2425 100 Minus
3L 28110227 3L 11621213..11621424 1025..814 1045 99.5 Minus
3L 28110227 3L 11620923..11621107 1205..1021 895 98.9 Minus
3L 28110227 3L 11622033..11622175 331..189 715 100 Minus
3L 28110227 3L 11620533..11620665 1338..1206 665 100 Minus
3L 28110227 3L 11624260..11624364 105..1 510 99 Minus
3L 28110227 3L 11624114..11624199 188..103 430 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:54:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 11614583..11615067 815..331 2425 100 Minus
3L 28103327 3L 11614313..11614524 1025..814 1045 99.5 Minus
3L 28103327 3L 11614023..11614207 1205..1021 895 98.9 Minus
3L 28103327 3L 11615133..11615275 331..189 715 100 Minus
3L 28103327 3L 11613633..11613765 1338..1206 665 100 Minus
3L 28103327 3L 11617360..11617464 105..1 510 99 Minus
3L 28103327 3L 11617214..11617299 188..103 430 100 Minus
Blast to na_te.dros performed on 2019-03-16 15:44:39 has no hits.

AT18092.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:45:24 Download gff for AT18092.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 11611448..11611578 1206..1336 98 <- Minus
chr3L 11611840..11612020 1025..1205 99 <- Minus
chr3L 11612131..11612339 816..1024 99 <- Minus
chr3L 11612400..11612883 332..815 99 <- Minus
chr3L 11612950..11613092 189..331 99 <- Minus
chr3L 11615020..11615104 104..188 98 <- Minus
chr3L 11615168..11615270 1..103 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:11:42 Download gff for AT18092.complete
Subject Subject Range Query Range Percent Splice Strand
CG6084-RB 1..1053 18..1070 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:44:08 Download gff for AT18092.complete
Subject Subject Range Query Range Percent Splice Strand
CG6084-RB 1..1053 18..1070 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:52:50 Download gff for AT18092.complete
Subject Subject Range Query Range Percent Splice Strand
CG6084-RB 1..1053 18..1070 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:33:34 Download gff for AT18092.complete
Subject Subject Range Query Range Percent Splice Strand
CG6084-RB 1..1053 18..1070 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:52:53 Download gff for AT18092.complete
Subject Subject Range Query Range Percent Splice Strand
CG6084-RB 1..1053 18..1070 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:54:37 Download gff for AT18092.complete
Subject Subject Range Query Range Percent Splice Strand
CG6084-RB 18..1353 1..1336 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:44:07 Download gff for AT18092.complete
Subject Subject Range Query Range Percent Splice Strand
CG6084-RB 18..1353 1..1336 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:52:50 Download gff for AT18092.complete
Subject Subject Range Query Range Percent Splice Strand
CG6084-RB 18..1353 1..1336 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:33:34 Download gff for AT18092.complete
Subject Subject Range Query Range Percent Splice Strand
CG6084-RB 18..1353 1..1336 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:52:53 Download gff for AT18092.complete
Subject Subject Range Query Range Percent Splice Strand
CG6084-RB 18..1353 1..1336 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:45:24 Download gff for AT18092.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11620923..11621103 1025..1205 99 <- Minus
3L 11621214..11621422 816..1024 99 <- Minus
3L 11620535..11620665 1206..1336 100 <- Minus
3L 11621483..11621966 332..815 100 <- Minus
3L 11622033..11622175 189..331 100 <- Minus
3L 11624114..11624198 104..188 100 <- Minus
3L 11624262..11624364 1..103 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:45:24 Download gff for AT18092.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11620923..11621103 1025..1205 99 <- Minus
3L 11621214..11621422 816..1024 99 <- Minus
3L 11620535..11620665 1206..1336 100 <- Minus
3L 11621483..11621966 332..815 100 <- Minus
3L 11622033..11622175 189..331 100 <- Minus
3L 11624114..11624198 104..188 100 <- Minus
3L 11624262..11624364 1..103 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:45:24 Download gff for AT18092.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11620923..11621103 1025..1205 99 <- Minus
3L 11621214..11621422 816..1024 99 <- Minus
3L 11620535..11620665 1206..1336 100 <- Minus
3L 11621483..11621966 332..815 100 <- Minus
3L 11622033..11622175 189..331 100 <- Minus
3L 11624114..11624198 104..188 100 <- Minus
3L 11624262..11624364 1..103 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:52:50 Download gff for AT18092.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11613635..11613765 1206..1336 100 <- Minus
arm_3L 11614023..11614203 1025..1205 99 <- Minus
arm_3L 11614314..11614522 816..1024 99 <- Minus
arm_3L 11614583..11615066 332..815 100 <- Minus
arm_3L 11615133..11615275 189..331 100 <- Minus
arm_3L 11617214..11617298 104..188 100 <- Minus
arm_3L 11617362..11617464 1..103 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:05:35 Download gff for AT18092.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11614314..11614522 816..1024 99 <- Minus
3L 11614583..11615066 332..815 100 <- Minus
3L 11615133..11615275 189..331 100 <- Minus
3L 11617214..11617298 104..188 100 <- Minus
3L 11617362..11617464 1..103 99   Minus
3L 11613635..11613765 1206..1336 100 <- Minus
3L 11614023..11614203 1025..1205 99 <- Minus

AT18092.hyp Sequence

Translation from 2 to 1069

> AT18092.hyp
LLACKMNTLMKIQLVRPVFRITLRNYGKPERFMWCQKEYARAPKVVCLDG
NEIPVIGLGTFNSPKGQVTEAVKVAIDAGYRHIDCAYVYQNEDEVGDGVE
AKIKEGVVKREDLFITSKLWNTFHRPDLVKSALENTLSSLKLKYLDLYLI
HWPMGYKEGCDLFPTDKDGKTLYSPVDYVDTWKAMEKLVEEGLVKSIGVS
NFNRRQIERVLEVATIPPVTNQIECHPYLTQKKLIDFCKSKDITITAYSP
LGSPNRPWAKAGDPVILEEAKIKEIAAKKKKTPGQILIRYQVQRANIVIP
KSVTKDRIESNFQVFDFELTPEEIEIIESFECNGRLVPLLKDAGTHKYYP
FHDEY*

AT18092.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:02:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG6084-PB 350 CG6084-PB 1..350 6..355 1850 100 Plus
CG6084-PC 350 CG6084-PC 1..350 6..355 1780 97.4 Plus
CG6084-PD 316 CG6084-PD 4..316 43..355 1598 96.8 Plus
CG6084-PA 316 CG6084-PA 4..316 43..355 1528 93.9 Plus
CG6083-PA 322 CG6083-PA 4..314 43..351 816 51 Plus

AT18092.pep Sequence

Translation from 17 to 1069

> AT18092.pep
MNTLMKIQLVRPVFRITLRNYGKPERFMWCQKEYARAPKVVCLDGNEIPV
IGLGTFNSPKGQVTEAVKVAIDAGYRHIDCAYVYQNEDEVGDGVEAKIKE
GVVKREDLFITSKLWNTFHRPDLVKSALENTLSSLKLKYLDLYLIHWPMG
YKEGCDLFPTDKDGKTLYSPVDYVDTWKAMEKLVEEGLVKSIGVSNFNRR
QIERVLEVATIPPVTNQIECHPYLTQKKLIDFCKSKDITITAYSPLGSPN
RPWAKAGDPVILEEAKIKEIAAKKKKTPGQILIRYQVQRANIVIPKSVTK
DRIESNFQVFDFELTPEEIEIIESFECNGRLVPLLKDAGTHKYYPFHDEY
*

AT18092.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:41:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24531-PA 350 GF24531-PA 1..350 1..350 1499 81.4 Plus
Dana\GF24530-PA 313 GF24530-PA 1..302 48..348 853 52.8 Plus
Dana\GF10249-PA 317 GF10249-PA 4..317 35..350 772 49.4 Plus
Dana\GF10250-PA 320 GF10250-PA 13..314 44..347 754 49.7 Plus
Dana\GF24014-PA 313 GF24014-PA 29..313 66..350 728 51 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:41:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13904-PA 373 GG13904-PA 1..373 1..350 1695 89.5 Plus
Dere\GG13903-PA 320 GG13903-PA 4..314 38..346 844 51.3 Plus
Dere\GG14235-PA 316 GG14235-PA 3..316 35..350 774 48.4 Plus
Dere\GG14236-PA 320 GG14236-PA 13..314 44..347 765 51.6 Plus
Dere\GG13825-PA 299 GG13825-PA 15..299 66..350 722 51.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:41:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16631-PA 318 GH16631-PA 3..318 35..350 1322 80.4 Plus
Dgri\GH16629-PA 321 GH16629-PA 4..315 38..349 875 51.1 Plus
Dgri\GH15710-PA 317 GH15710-PA 5..317 36..350 795 49.5 Plus
Dgri\GH20139-PA 311 GH20139-PA 5..311 37..350 698 44.3 Plus
Dgri\GH16848-PA 385 GH16848-PA 37..343 37..346 653 39.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:13:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG6084-PB 350 CG6084-PB 1..350 1..350 1850 100 Plus
CG6084-PC 350 CG6084-PC 1..350 1..350 1780 97.4 Plus
CG6084-PD 316 CG6084-PD 4..316 38..350 1598 96.8 Plus
CG6084-PA 316 CG6084-PA 4..316 38..350 1528 93.9 Plus
CG6083-PA 322 CG6083-PA 4..314 38..346 816 51 Plus
CG10638-PD 317 CG10638-PD 4..317 37..350 775 51.1 Plus
CG10638-PA 317 CG10638-PA 4..317 37..350 775 51.1 Plus
CG10863-PA 316 CG10863-PA 3..316 35..350 757 48.7 Plus
CG12766-PA 320 CG12766-PA 13..314 44..347 744 51 Plus
CG9436-PA 311 CG9436-PA 5..311 37..350 677 44.9 Plus
ARY-PD 384 CG40064-PD 32..344 31..346 653 40.8 Plus
CG10638-PB 310 CG10638-PB 4..310 37..346 642 43.3 Plus
ARY-PC 366 CG40064-PC 45..326 62..346 599 41 Plus
CG2767-PA 329 CG2767-PA 11..327 44..350 591 41.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:41:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11589-PA 318 GI11589-PA 3..318 35..350 1336 82 Plus
Dmoj\GI11588-PA 328 GI11588-PA 4..313 38..346 854 51.1 Plus
Dmoj\GI13068-PA 317 GI13068-PA 4..317 37..350 811 52.1 Plus
Dmoj\GI12765-PA 317 GI12765-PA 13..317 44..350 773 49.2 Plus
Dmoj\GI20232-PA 311 GI20232-PA 5..311 37..350 708 44.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:41:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22808-PA 318 GL22808-PA 3..318 35..350 1373 84.2 Plus
Dper\GL24949-PA 440 GL24949-PA 130..440 44..350 759 50.6 Plus
Dper\GL16200-PA 317 GL16200-PA 4..317 35..350 756 47.5 Plus
Dper\GL10976-PA 311 GL10976-PA 5..311 37..350 744 46.8 Plus
Dper\GL22807-PA 355 GL22807-PA 4..342 38..346 724 44.7 Plus
Dper\GL24949-PA 440 GL24949-PA 4..132 37..163 278 41.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:41:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19342-PA 318 GA19342-PA 3..318 35..350 1375 84.5 Plus
Dpse\GA19341-PA 326 GA19341-PA 4..313 38..346 850 50.8 Plus
Dpse\GA23569-PA 317 GA23569-PA 4..317 34..350 763 50 Plus
Dpse\GA10606-PA 317 GA10606-PA 4..317 35..350 758 47.5 Plus
Dpse\GA21786-PA 311 GA21786-PA 5..311 37..350 744 46.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:41:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24729-PA 373 GM24729-PA 1..373 1..350 1800 91.7 Plus
Dsec\GM24728-PA 320 GM24728-PA 4..314 38..346 836 51.3 Plus
Dsec\GM14027-PA 316 GM14027-PA 3..316 35..350 771 48.1 Plus
Dsec\GM14028-PA 320 GM14028-PA 13..314 44..347 758 51.3 Plus
Dsec\GM24650-PA 544 GM24650-PA 214..544 9..350 732 46.1 Plus
Dsec\GM24650-PA 544 GM24650-PA 4..250 37..285 552 45.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:41:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12789-PA 350 GD12789-PA 1..350 1..350 1851 98.9 Plus
Dsim\GD12788-PA 320 GD12788-PA 4..314 38..346 839 51.3 Plus
Dsim\GD13308-PA 316 GD13308-PA 3..316 35..350 773 48.4 Plus
Dsim\GD13309-PA 320 GD13309-PA 13..314 44..347 761 51.3 Plus
Dsim\GD10303-PA 311 GD10303-PA 5..311 37..350 718 45.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:41:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11267-PA 352 GJ11267-PA 9..352 7..350 1459 81.4 Plus
Dvir\GJ11266-PA 321 GJ11266-PA 4..313 38..346 867 51.8 Plus
Dvir\GJ13816-PA 317 GJ13816-PA 4..317 37..350 780 50.2 Plus
Dvir\GJ16106-PA 318 GJ16106-PA 14..318 44..350 773 50.2 Plus
Dvir\GJ20182-PA 311 GJ20182-PA 5..311 37..350 712 44.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17015-PA 318 GK17015-PA 3..318 35..350 1398 84.5 Plus
Dwil\GK14636-PA 318 GK14636-PA 3..318 35..350 1361 82.3 Plus
Dwil\GK17013-PA 323 GK17013-PA 4..313 38..346 843 53.4 Plus
Dwil\GK16694-PA 314 GK16694-PA 10..314 44..350 791 50.5 Plus
Dwil\GK22153-PA 311 GK22153-PA 5..311 37..350 755 47.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20195-PA 350 GE20195-PA 1..350 1..350 1816 96.6 Plus
Dyak\GE20194-PA 320 GE20194-PA 4..314 38..346 840 51.6 Plus
Dyak\GE20663-PA 316 GE20663-PA 3..316 35..350 781 48.7 Plus
Dyak\GE20664-PA 320 GE20664-PA 13..314 44..347 766 51.3 Plus
Dyak\GE24510-PA 311 GE24510-PA 5..311 37..350 713 45.3 Plus