BDGP Sequence Production Resources |
Search the DGRC for AT18239
Library: | AT |
Tissue Source: | Drosophila melanogaster adult testes |
Created by: | Ling Hong |
Date Registered: | 2000-06-08 |
Comments: | Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7 |
Original Plate Number: | 182 |
Well: | 39 |
Vector: | pOTB7 |
Associated Gene/Transcript | Rpn12R-RA |
Protein status: | AT18239.pep: gold |
Sequenced Size: | 959 |
Gene | Date | Evidence |
---|---|---|
CG11552 | 2002-01-01 | Sim4 clustering to Release 2 |
CG11552 | 2008-04-29 | Release 5.5 accounting |
CG11552 | 2008-08-15 | Release 5.9 accounting |
CG11552 | 2008-12-18 | 5.12 accounting |
959 bp (959 high quality bases) assembled on 2002-01-03
GenBank Submission: AY075229
> AT18239.complete GTCAATCAAAACGAACAAAATTTTCATTCCCAAAAATTTAGTCGTTGTCG AGACTTTGCTGTAATCATGTCGAATCTGTACACCGAATTGAAGAACGAGT GGAGCAAACATGCGCCCAACCTCACCCACTGCTCCCGCCTCCTGGATGGC TTCAAACTGGAGCTGGTGAGGTCCAACTTTGGAACAATCCAAACTGCATC GAGTTCCAAGCAAAAGGATCAGCTAATCAAATCGCGGGAGATGCTGGAAA TCGCCGTGGAACATAGCATCACCATCAAGGATTATGCTGCCTTCGAGAGA TATATGGCCCAGTTGAATACCTACTACTATGATTACGATAAGTACTTGGA ATCATCGAAGCACATGTACAAGTTCATGGGCCTAAATCTGCTATATATGT TGGCCACGAATCGCCTTGCCGACTTCCACATCGAACTGGAACGTTTACCG ACGGCTTTGCTGCTCCATGATAGCTTCATCCAACCCGTTTTGGCTTTGGA GAACTACTACATGGAGGGCAGATACAACAAGATACTGCAAGCCAAGAAAT CTATGCCCTCGGAGATCTATTCGAATTTTATGGACATCCTGGTGAACACG GCGCGTGAGGAGATCGCATCCTGCATGGAGAAATCCTATCTGAAGATGGC GCCCAAACTAGCTGCTCAGCGTTTGGGCCTTCGTCCCGGTTCCAAGGAGC TTTTCGAGCTGGCGACTAAGCGCCAGTGGTGTCTGGACGAGGAGGGGAAC TACGACTATGCTGGACTTCATACCAGACCCATGGAGAAGGTCCCTGCCAA GGACATCGCCACGCATAATCTCACTTATGCCCAAGAGCTGGAGAAAATAG TTTGAATTTTCTCATTAGATCAATTCTTGCTTCTAATCCCCTCAACCGGA AAATAATATCCAGAATTTATACATTCGTCCAAAAATCAGTAAAAAAAAAA AAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rpn12R-RA | 945 | Rpn12R-RA | 1..943 | 1..943 | 4535 | 98.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 15031679..15032618 | 940..1 | 4610 | 99.4 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 15041628..15042570 | 943..1 | 4535 | 98.7 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 15034728..15035670 | 943..1 | 4535 | 98.7 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 15031679..15032618 | 1..940 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11552-RA | 1..789 | 67..855 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn12R-RA | 1..789 | 67..855 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn12R-RA | 1..789 | 67..855 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11552-RA | 1..789 | 67..855 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn12R-RA | 1..789 | 67..855 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11552-RA | 1..940 | 1..940 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn12R-RA | 1..940 | 1..940 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn12R-RA | 1..940 | 1..940 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11552-RA | 1..940 | 1..940 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn12R-RA | 1..940 | 1..940 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15041631..15042570 | 1..940 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15041631..15042570 | 1..940 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15041631..15042570 | 1..940 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 15034731..15035670 | 1..940 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15034731..15035670 | 1..940 | 98 | Minus |
Translation from 1 to 854
> AT18239.hyp VNQNEQNFHSQKFSRCRDFAVIMSNLYTELKNEWSKHAPNLTHCSRLLDG FKLELVRSNFGTIQTASSSKQKDQLIKSREMLEIAVEHSITIKDYAAFER YMAQLNTYYYDYDKYLESSKHMYKFMGLNLLYMLATNRLADFHIELERLP TALLLHDSFIQPVLALENYYMEGRYNKILQAKKSMPSEIYSNFMDILVNT AREEIASCMEKSYLKMAPKLAAQRLGLRPGSKELFELATKRQWCLDEEGN YDYAGLHTRPMEKVPAKDIATHNLTYAQELEKIV*
Translation from 66 to 854
> AT18239.pep MSNLYTELKNEWSKHAPNLTHCSRLLDGFKLELVRSNFGTIQTASSSKQK DQLIKSREMLEIAVEHSITIKDYAAFERYMAQLNTYYYDYDKYLESSKHM YKFMGLNLLYMLATNRLADFHIELERLPTALLLHDSFIQPVLALENYYME GRYNKILQAKKSMPSEIYSNFMDILVNTAREEIASCMEKSYLKMAPKLAA QRLGLRPGSKELFELATKRQWCLDEEGNYDYAGLHTRPMEKVPAKDIATH NLTYAQELEKIV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10751-PA | 262 | GF10751-PA | 1..262 | 1..262 | 1194 | 84 | Plus |
Dana\GF23919-PA | 264 | GF23919-PA | 4..264 | 1..262 | 616 | 50 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13696-PA | 262 | GG13696-PA | 1..262 | 1..262 | 1281 | 95 | Plus |
Dere\GG13563-PA | 264 | GG13563-PA | 7..264 | 4..262 | 598 | 49.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16677-PA | 264 | GH16677-PA | 7..264 | 7..262 | 905 | 65.9 | Plus |
Dgri\GH15898-PA | 264 | GH15898-PA | 4..264 | 1..262 | 589 | 48.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rpn12R-PA | 262 | CG11552-PA | 1..262 | 1..262 | 1357 | 100 | Plus |
Rpn12-PA | 264 | CG4157-PA | 4..264 | 1..262 | 660 | 49.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11363-PA | 264 | GI11363-PA | 1..264 | 1..262 | 986 | 69.3 | Plus |
Dmoj\GI16550-PA | 264 | GI16550-PA | 4..264 | 1..262 | 601 | 50 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22312-PA | 263 | GL22312-PA | 1..263 | 1..262 | 999 | 70.7 | Plus |
Dper\GL21520-PA | 789 | GL21520-PA | 1..193 | 1..194 | 663 | 66.8 | Plus |
Dper\GL17868-PA | 264 | GL17868-PA | 4..264 | 1..262 | 606 | 49.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA26312-PA | 263 | GA26312-PA | 1..263 | 1..262 | 1005 | 71.1 | Plus |
Dpse\GA27448-PA | 263 | GA27448-PA | 1..263 | 1..262 | 999 | 70.3 | Plus |
Dpse\GA17993-PA | 264 | GA17993-PA | 4..264 | 1..262 | 606 | 49.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24516-PA | 262 | GM24516-PA | 1..262 | 1..262 | 1364 | 97.3 | Plus |
Dsec\GM25643-PA | 264 | GM25643-PA | 4..264 | 1..262 | 603 | 49.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12587-PA | 262 | GD12587-PA | 1..262 | 1..262 | 1364 | 97.3 | Plus |
Dsim\GD14646-PA | 264 | GD14646-PA | 4..264 | 1..262 | 603 | 49.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11618-PA | 264 | GJ11618-PA | 1..264 | 1..262 | 931 | 67.8 | Plus |
Dvir\GJ12802-PA | 264 | GJ12802-PA | 7..264 | 4..262 | 599 | 49.8 | Plus |