Clone AT18288 Report

Search the DGRC for AT18288

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:182
Well:88
Vector:pOTB7
Associated Gene/TranscriptCG17380-RB
Protein status:AT18288.pep: validated full length
Preliminary Size:337
Sequenced Size:1038

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17380 2002-01-01 Sim4 clustering to Release 2
CG17380 2002-06-10 Blastp of sequenced clone
CG17380 2003-01-01 Sim4 clustering to Release 3
CG17380 2008-04-29 Release 5.5 accounting
CG17380 2008-08-15 Release 5.9 accounting
CG17380 2008-12-18 5.12 accounting

Clone Sequence Records

AT18288.complete Sequence

1038 bp (1038 high quality bases) assembled on 2002-06-10

GenBank Submission: AY070798

> AT18288.complete
ATTCGCTTCACTACTTTTTGATTTTCTTAATAGTCCCCGGGACTTCTACG
GCACTCAGACATGAGAGGTGCTCTTTCATCGCAAATCCTGGCCCTTGCAA
GGGAAATTTTGAAATGTTTGCCTATGACATGGATAACAATGTATGCGTAG
AATTTATCTACGGTGGTTGTGGCGGAAACCCGAATCGTTTTCAAACTAAA
AAGGAATGCATACTTCTATGTAATGCTTTAGCTGATGAAGACGAATACCT
TATTGTTTATACTGACAAAAATGAACAACAAATAACAGATGGCACGATGT
CAGAAGAAGGTTCGGTAATGACCACGAAAAGAGAAAACACTACACTCTCA
TATTAAGAGGTTATTAATTAAGTAATGATTTACAACTTACCATAAAATCT
TGAGCAATGGCCACGACCTTAAGTAGCTGATGGTGCCAACACCATTCCAA
CAACGAATTTACTCGAATTGTCGATTTCCTTATAACCAACAGCACTGGTT
GTGTGTTTAGCATACGTAGATTGCGGTATAAAATTTCCAGTATGTCTTCC
GGTGAATCGTTAACAAAAGCTATTGTAAGGACATTATGTGACGGATTTTC
AAGCAAGCTATAGGTTTCCCTAGAGTGCTCTTTAATTTGAAGTACGGAAA
CAGGAAGTTGCCACAAAATATCTAACCAAGTCGTATCGAAGTTGCCCAAA
AGCAGAACATATTCAATTTTAAGTTCACGATTCAAATGATGAATTAAACT
ATGATAGAAGCTATCCCCGCCAGGACTAAGGAGAACCAAGGCGACTAACA
GTAGGTGCAACTGACCCATTTTGAATGTGGGAATAGTTGGTCCACTTCCA
ACTTATATATTGTGCTTTCAACTGCCATTAACTGCACCCACGGGAGAAGA
GGTGTCACGACCATCTTTTGATTTATTTAACGTCGCCTGAGAGTTTTTTG
TCATCACATTACAGTGCCATTAAGTTGACATCTATATTATAGTAATAAAA
TAATATACATATGTGGCTTAAAAAAAAAAAAAAAAAAA

AT18288.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:49:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG17380-RB 1020 CG17380-RB 5..1020 1..1016 5065 99.9 Plus
Ir94d-RA 1782 Ir94d-RA 1..430 819..390 2150 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:40:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 19225972..19226928 1019..63 4770 99.9 Minus
chr3R 27901430 chr3R 19226981..19227043 63..1 315 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:52:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:40:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23402606..23403564 1021..63 4780 99.9 Minus
3R 32079331 3R 23403617..23403679 63..1 315 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:22:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 23143437..23144395 1021..63 4780 99.8 Minus
3R 31820162 3R 23144448..23144510 63..1 315 100 Minus
Blast to na_te.dros performed on 2019-03-15 17:40:09 has no hits.

AT18288.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:40:50 Download gff for AT18288.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 19225972..19226927 64..1019 99 <- Minus
chr3R 19226981..19227043 1..63 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:12:06 Download gff for AT18288.complete
Subject Subject Range Query Range Percent Splice Strand
CG17380-RB 5..360 1..356 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:25:25 Download gff for AT18288.complete
Subject Subject Range Query Range Percent Splice Strand
CG17380-RB 5..360 1..356 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:43:12 Download gff for AT18288.complete
Subject Subject Range Query Range Percent Splice Strand
CG17380-RB 5..360 1..356 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:15:54 Download gff for AT18288.complete
Subject Subject Range Query Range Percent Splice Strand
CG17380-RB 5..360 1..356 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:44:08 Download gff for AT18288.complete
Subject Subject Range Query Range Percent Splice Strand
CG17380-RB 5..360 1..356 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:53:13 Download gff for AT18288.complete
Subject Subject Range Query Range Percent Splice Strand
CG17380-RB 5..1020 1..1016 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:25:24 Download gff for AT18288.complete
Subject Subject Range Query Range Percent Splice Strand
CG17380-RB 5..1020 1..1016 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:43:12 Download gff for AT18288.complete
Subject Subject Range Query Range Percent Splice Strand
CG17380-RB 5..1020 1..1016 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:15:54 Download gff for AT18288.complete
Subject Subject Range Query Range Percent Splice Strand
CG17380-RB 5..1020 1..1016 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:44:08 Download gff for AT18288.complete
Subject Subject Range Query Range Percent Splice Strand
CG17380-RB 50..1068 1..1019 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:40:50 Download gff for AT18288.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23402608..23403563 64..1019 99 <- Minus
3R 23403617..23403679 1..63 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:40:50 Download gff for AT18288.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23402608..23403563 64..1019 99 <- Minus
3R 23403617..23403679 1..63 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:40:50 Download gff for AT18288.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23402608..23403563 64..1019 99 <- Minus
3R 23403617..23403679 1..63 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:43:12 Download gff for AT18288.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19228330..19229285 64..1019 99 <- Minus
arm_3R 19229339..19229401 1..63 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:49:08 Download gff for AT18288.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23143439..23144394 64..1019 99 <- Minus
3R 23144448..23144510 1..63 100   Minus

AT18288.hyp Sequence

Translation from 2 to 355

> AT18288.hyp
SLHYFLIFLIVPGTSTALRHERCSFIANPGPCKGNFEMFAYDMDNNVCVE
FIYGGCGGNPNRFQTKKECILLCNALADEDEYLIVYTDKNEQQITDGTMS
EEGSVMTTKRENTTLSY*

AT18288.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:03:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG17380-PB 119 CG17380-PB 3..119 1..117 634 100 Plus
CG31609-PB 123 CG31609-PB 9..81 5..73 187 47.3 Plus
CG31515-PB 129 CG31515-PB 39..97 15..73 155 45.8 Plus
Acp24A4-PC 78 CG31779-PC 9..76 7..73 150 42.6 Plus
Acp24A4-PB 78 CG31779-PB 9..76 7..73 150 42.6 Plus

AT18288.pep Sequence

Translation from 113 to 355

> AT18288.pep
MFAYDMDNNVCVEFIYGGCGGNPNRFQTKKECILLCNALADEDEYLIVYT
DKNEQQITDGTMSEEGSVMTTKRENTTLSY*

AT18288.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:55:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19953-PA 179 GF19953-PA 1..46 1..46 161 56.5 Plus
Dana\GF18766-PA 116 GF18766-PA 51..114 1..75 129 42.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:55:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12436-PA 96 GG12436-PA 1..88 1..76 243 61.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG17380-PB 119 CG17380-PB 40..119 1..80 431 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:55:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17756-PA 142 GI17756-PA 71..138 2..68 139 42.6 Plus
Dmoj\GI10711-PA 108 GI10711-PA 1..45 1..45 133 53.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:55:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23567-PA 75 GM23567-PA 1..73 1..75 303 80 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:55:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18383-PA 83 GD18383-PA 1..81 1..75 313 75.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14412-PA 119 GJ14412-PA 60..95 1..36 129 63.9 Plus
Dvir\GJ17584-PA 144 GJ17584-PA 70..104 2..36 128 57.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18943-PA 80 GK18943-PA 1..38 1..38 142 63.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:55:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23957-PA 95 GE23957-PA 1..87 1..76 253 64.4 Plus