AT18288.complete Sequence
1038 bp (1038 high quality bases) assembled on 2002-06-10
GenBank Submission: AY070798
> AT18288.complete
ATTCGCTTCACTACTTTTTGATTTTCTTAATAGTCCCCGGGACTTCTACG
GCACTCAGACATGAGAGGTGCTCTTTCATCGCAAATCCTGGCCCTTGCAA
GGGAAATTTTGAAATGTTTGCCTATGACATGGATAACAATGTATGCGTAG
AATTTATCTACGGTGGTTGTGGCGGAAACCCGAATCGTTTTCAAACTAAA
AAGGAATGCATACTTCTATGTAATGCTTTAGCTGATGAAGACGAATACCT
TATTGTTTATACTGACAAAAATGAACAACAAATAACAGATGGCACGATGT
CAGAAGAAGGTTCGGTAATGACCACGAAAAGAGAAAACACTACACTCTCA
TATTAAGAGGTTATTAATTAAGTAATGATTTACAACTTACCATAAAATCT
TGAGCAATGGCCACGACCTTAAGTAGCTGATGGTGCCAACACCATTCCAA
CAACGAATTTACTCGAATTGTCGATTTCCTTATAACCAACAGCACTGGTT
GTGTGTTTAGCATACGTAGATTGCGGTATAAAATTTCCAGTATGTCTTCC
GGTGAATCGTTAACAAAAGCTATTGTAAGGACATTATGTGACGGATTTTC
AAGCAAGCTATAGGTTTCCCTAGAGTGCTCTTTAATTTGAAGTACGGAAA
CAGGAAGTTGCCACAAAATATCTAACCAAGTCGTATCGAAGTTGCCCAAA
AGCAGAACATATTCAATTTTAAGTTCACGATTCAAATGATGAATTAAACT
ATGATAGAAGCTATCCCCGCCAGGACTAAGGAGAACCAAGGCGACTAACA
GTAGGTGCAACTGACCCATTTTGAATGTGGGAATAGTTGGTCCACTTCCA
ACTTATATATTGTGCTTTCAACTGCCATTAACTGCACCCACGGGAGAAGA
GGTGTCACGACCATCTTTTGATTTATTTAACGTCGCCTGAGAGTTTTTTG
TCATCACATTACAGTGCCATTAAGTTGACATCTATATTATAGTAATAAAA
TAATATACATATGTGGCTTAAAAAAAAAAAAAAAAAAA
AT18288.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 18:49:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17380-RB | 1020 | CG17380-RB | 5..1020 | 1..1016 | 5065 | 99.9 | Plus |
Ir94d-RA | 1782 | Ir94d-RA | 1..430 | 819..390 | 2150 | 100 | Minus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:40:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 19225972..19226928 | 1019..63 | 4770 | 99.9 | Minus |
chr3R | 27901430 | chr3R | 19226981..19227043 | 63..1 | 315 | 100 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:52:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:40:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23402606..23403564 | 1021..63 | 4780 | 99.9 | Minus |
3R | 32079331 | 3R | 23403617..23403679 | 63..1 | 315 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:22:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 23143437..23144395 | 1021..63 | 4780 | 99.8 | Minus |
3R | 31820162 | 3R | 23144448..23144510 | 63..1 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2019-03-15 17:40:09 has no hits.
AT18288.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:40:50 Download gff for
AT18288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 19225972..19226927 | 64..1019 | 99 | <- | Minus |
chr3R | 19226981..19227043 | 1..63 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:12:06 Download gff for
AT18288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17380-RB | 5..360 | 1..356 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:25:25 Download gff for
AT18288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17380-RB | 5..360 | 1..356 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:43:12 Download gff for
AT18288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17380-RB | 5..360 | 1..356 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:15:54 Download gff for
AT18288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17380-RB | 5..360 | 1..356 | 99 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:44:08 Download gff for
AT18288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17380-RB | 5..360 | 1..356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:53:13 Download gff for
AT18288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17380-RB | 5..1020 | 1..1016 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:25:24 Download gff for
AT18288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17380-RB | 5..1020 | 1..1016 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:43:12 Download gff for
AT18288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17380-RB | 5..1020 | 1..1016 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:15:54 Download gff for
AT18288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17380-RB | 5..1020 | 1..1016 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:44:08 Download gff for
AT18288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17380-RB | 50..1068 | 1..1019 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:40:50 Download gff for
AT18288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23402608..23403563 | 64..1019 | 99 | <- | Minus |
3R | 23403617..23403679 | 1..63 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:40:50 Download gff for
AT18288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23402608..23403563 | 64..1019 | 99 | <- | Minus |
3R | 23403617..23403679 | 1..63 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:40:50 Download gff for
AT18288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23402608..23403563 | 64..1019 | 99 | <- | Minus |
3R | 23403617..23403679 | 1..63 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:43:12 Download gff for
AT18288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19228330..19229285 | 64..1019 | 99 | <- | Minus |
arm_3R | 19229339..19229401 | 1..63 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:49:08 Download gff for
AT18288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23143439..23144394 | 64..1019 | 99 | <- | Minus |
3R | 23144448..23144510 | 1..63 | 100 | | Minus |
AT18288.hyp Sequence
Translation from 2 to 355
> AT18288.hyp
SLHYFLIFLIVPGTSTALRHERCSFIANPGPCKGNFEMFAYDMDNNVCVE
FIYGGCGGNPNRFQTKKECILLCNALADEDEYLIVYTDKNEQQITDGTMS
EEGSVMTTKRENTTLSY*
AT18288.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:03:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17380-PB | 119 | CG17380-PB | 3..119 | 1..117 | 634 | 100 | Plus |
CG31609-PB | 123 | CG31609-PB | 9..81 | 5..73 | 187 | 47.3 | Plus |
CG31515-PB | 129 | CG31515-PB | 39..97 | 15..73 | 155 | 45.8 | Plus |
Acp24A4-PC | 78 | CG31779-PC | 9..76 | 7..73 | 150 | 42.6 | Plus |
Acp24A4-PB | 78 | CG31779-PB | 9..76 | 7..73 | 150 | 42.6 | Plus |
AT18288.pep Sequence
Translation from 113 to 355
> AT18288.pep
MFAYDMDNNVCVEFIYGGCGGNPNRFQTKKECILLCNALADEDEYLIVYT
DKNEQQITDGTMSEEGSVMTTKRENTTLSY*
AT18288.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:55:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF19953-PA | 179 | GF19953-PA | 1..46 | 1..46 | 161 | 56.5 | Plus |
Dana\GF18766-PA | 116 | GF18766-PA | 51..114 | 1..75 | 129 | 42.7 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:55:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG12436-PA | 96 | GG12436-PA | 1..88 | 1..76 | 243 | 61.4 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17380-PB | 119 | CG17380-PB | 40..119 | 1..80 | 431 | 100 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:55:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI17756-PA | 142 | GI17756-PA | 71..138 | 2..68 | 139 | 42.6 | Plus |
Dmoj\GI10711-PA | 108 | GI10711-PA | 1..45 | 1..45 | 133 | 53.3 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:55:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM23567-PA | 75 | GM23567-PA | 1..73 | 1..75 | 303 | 80 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:55:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD18383-PA | 83 | GD18383-PA | 1..81 | 1..75 | 313 | 75.3 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:55:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ14412-PA | 119 | GJ14412-PA | 60..95 | 1..36 | 129 | 63.9 | Plus |
Dvir\GJ17584-PA | 144 | GJ17584-PA | 70..104 | 2..36 | 128 | 57.1 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:55:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK18943-PA | 80 | GK18943-PA | 1..38 | 1..38 | 142 | 63.2 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:55:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE23957-PA | 95 | GE23957-PA | 1..87 | 1..76 | 253 | 64.4 | Plus |