Clone AT18312 Report

Search the DGRC for AT18312

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:183
Well:12
Vector:pOTB7
Associated Gene/TranscriptCG10407-RA
Protein status:AT18312.pep: gold
Sequenced Size:994

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10407-RA 2009-03-03 EST screening

Clone Sequence Records

AT18312.complete Sequence

994 bp assembled on 2009-04-13

GenBank Submission: BT082017.1

> AT18312.complete
GGGAGGGCCCTGGGGGTTGGCGAATTTCGGCACGAGGACTGCCAGAGCTT
CAAGGAGATCGCAAGGAAACACAAAATGAACCAATACTTTTTGACGGGCT
TGCTTTTGGTGCTAGGAGTAGTACTACATATAGACTGGACAACAGCCAAA
CCTCCGGCGAAAAAGGCGGATCAGCTGCCATCCTTTCTTAAGGTATGCCA
TCGCAATGCACCCGACCTAGACACCTGTGTTCGAGAATCTTATGAGGAAC
TACGTCCAAGGCTTATGGAAGGTATACCAGAGCTATATATACCTGCCATG
GAGCCGCTGGTTGTTCCTCAGGTCAAGATGGACCAGGACTCCGGGGCCAT
ATATTTGCACTCAGTGTACCGAAATGTCAAAGTCACAGGCATCTCAAAGC
ACACGGTCAATGAGCTGCGTCTGGAGCCTTCAAAACTCAAGTTCATTTTG
TCTCTGACCTTCCCAAAGCTGCATATGGAATCGGACTACAGCATTAAGGG
AAAAATTATGATGATGCCACTTTTGGGCGATGGCCACTGTAAGGTGGATC
TCGTTAACATCACCATGCGAACCGAGCTGATTGGACAGGAGTACAAAAAG
AATGGAGCCAACTTTTTGAAGATCAACACTGTGAAGGTCAAGTACGAGCT
ATCTGATGTCCACATTCATCTGGATAACCTTTTCAACGGGGATAAAGCTT
TGGGTGATCGCATGAATGAGTTCCTCAACGAGAACTGGAAGGCACTGGCC
GAGGAAGTGCGTCCGTTGATGACCAAGGCGCTGGTGGACATTTTGAGGGC
CTCCGTGGATAAATTGTTTGCTTCTTTTAGCTACGATGATCTGCTTCCCA
TGTAAAATATCTAGTGAAGCCCATTTTTTTTCTATCTTACTGATTTAATC
GTAGTACAAACAGTAGCCTACAAATTAAGCAGACAGTTAAAAGCGAAATA
AATTATAAATATAATACAAAAAAAAAAAAAAAAAAAAAAAAAAA

AT18312.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:30:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG10407.b 1134 CG10407.b 205..1134 38..967 4590 99.5 Plus
CG10407-RA 1136 CG10407-RA 207..1136 38..967 4590 99.5 Plus
CG10407.a 1082 CG10407.a 614..1082 499..967 2300 99.3 Plus
CG10407.a 1082 CG10407.a 141..602 38..499 2295 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:36:08
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 11869331..11869745 967..553 2075 100 Minus
chr3R 27901430 chr3R 11869938..11870258 499..179 1605 100 Minus
chr3R 27901430 chr3R 11870391..11870531 178..38 705 100 Minus
chr3R 27901430 chr3R 11869801..11869861 557..497 290 98.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:52:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:36:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16044742..16045161 972..553 2055 99.3 Minus
3R 32079331 3R 16045354..16045674 499..179 1590 99.7 Minus
3R 32079331 3R 16045807..16045947 178..38 705 100 Minus
3R 32079331 3R 16045217..16045277 557..497 290 98.4 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:46:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 15785573..15785992 972..553 2055 99.2 Minus
3R 31820162 3R 15786185..15786505 499..179 1590 99.6 Minus
3R 31820162 3R 15786638..15786778 178..38 705 100 Minus
3R 31820162 3R 15786048..15786108 557..497 290 98.3 Minus
Blast to na_te.dros performed 2019-03-15 23:36:06
Subject Length Description Subject Range Query Range Score Percent Strand
accord2 7650 accord2 QBERT 7650bp 2476..2513 963..926 118 78.9 Minus

AT18312.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:37:08 Download gff for AT18312.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 11869353..11869744 554..945 100 <- Minus
chr3R 11869805..11869859 499..553 100 <- Minus
chr3R 11869939..11870258 179..498 100 <- Minus
chr3R 11870391..11870535 34..178 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:49:23 Download gff for AT18312.complete
Subject Subject Range Query Range Percent Splice Strand
CG10407-RA 1..780 76..855 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:45:27 Download gff for AT18312.complete
Subject Subject Range Query Range Percent Splice Strand
CG10407-RA 1..780 76..855 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:29:58 Download gff for AT18312.complete
Subject Subject Range Query Range Percent Splice Strand
CG10407-RA 1..780 76..855 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:41:49 Download gff for AT18312.complete
Subject Subject Range Query Range Percent Splice Strand
CG10407-RA 1..780 76..855 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-04-13 09:25:09 Download gff for AT18312.complete
Subject Subject Range Query Range Percent Splice Strand
CG10407-RA 21..912 34..925 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:45:27 Download gff for AT18312.complete
Subject Subject Range Query Range Percent Splice Strand
CG10407-RA 21..954 34..967 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:29:58 Download gff for AT18312.complete
Subject Subject Range Query Range Percent Splice Strand
CG10407-RA 21..954 34..967 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:41:49 Download gff for AT18312.complete
Subject Subject Range Query Range Percent Splice Strand
CG10407-RA 21..954 34..967 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:37:08 Download gff for AT18312.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16044747..16045160 554..967 99 <- Minus
3R 16045221..16045275 499..553 100 <- Minus
3R 16045355..16045674 179..498 99 <- Minus
3R 16045807..16045951 34..178 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:37:08 Download gff for AT18312.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16044747..16045160 554..967 99 <- Minus
3R 16045221..16045275 499..553 100 <- Minus
3R 16045355..16045674 179..498 99 <- Minus
3R 16045807..16045951 34..178 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:37:08 Download gff for AT18312.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16044747..16045160 554..967 99 <- Minus
3R 16045221..16045275 499..553 100 <- Minus
3R 16045355..16045674 179..498 99 <- Minus
3R 16045807..16045951 34..178 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:29:58 Download gff for AT18312.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11870943..11870997 499..553 100 <- Minus
arm_3R 11870469..11870882 554..967 99 <- Minus
arm_3R 11871077..11871396 179..498 99 <- Minus
arm_3R 11871529..11871673 34..178 98   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:20:44 Download gff for AT18312.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15785578..15785991 554..967 99 <- Minus
3R 15786052..15786106 499..553 100 <- Minus
3R 15786186..15786505 179..498 99 <- Minus
3R 15786638..15786782 34..178 98   Minus

AT18312.pep Sequence

Translation from 0 to 854

> AT18312.pep
GRALGVGEFRHEDCQSFKEIARKHKMNQYFLTGLLLVLGVVLHIDWTTAK
PPAKKADQLPSFLKVCHRNAPDLDTCVRESYEELRPRLMEGIPELYIPAM
EPLVVPQVKMDQDSGAIYLHSVYRNVKVTGISKHTVNELRLEPSKLKFIL
SLTFPKLHMESDYSIKGKIMMMPLLGDGHCKVDLVNITMRTELIGQEYKK
NGANFLKINTVKVKYELSDVHIHLDNLFNGDKALGDRMNEFLNENWKALA
EEVRPLMTKALVDILRASVDKLFASFSYDDLLPM*

AT18312.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:29:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11323-PA 261 GF11323-PA 15..257 41..283 1115 83.1 Plus
Dana\GF11902-PA 266 GF11902-PA 41..257 60..274 346 32.7 Plus
Dana\GF16079-PA 246 GF16079-PA 20..246 56..284 341 30.6 Plus
Dana\GF20756-PA 251 GF20756-PA 24..249 56..282 313 31.1 Plus
Dana\GF17552-PA 250 GF17552-PA 16..247 53..282 311 30.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:29:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20212-PA 259 GG20212-PA 1..258 26..283 1251 96.1 Plus
Dere\GG16974-PA 269 GG16974-PA 44..260 60..274 343 31.8 Plus
Dere\GG11299-PA 251 GG11299-PA 1..249 26..282 329 30.6 Plus
Dere\GG11266-PA 246 GG11266-PA 20..246 56..284 320 28.4 Plus
Dere\GG11378-PA 250 GG11378-PA 16..247 53..282 316 29.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:29:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18842-PA 260 GH18842-PA 1..256 26..283 933 67.8 Plus
Dgri\GH18760-PA 268 GH18760-PA 36..259 50..274 356 31.3 Plus
Dgri\GH17380-PA 248 GH17380-PA 14..245 53..282 333 30.8 Plus
Dgri\GH15290-PA 247 GH15290-PA 20..247 56..284 330 29.1 Plus
Dgri\GH18827-PA 250 GH18827-PA 29..248 61..282 299 30.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG10407-PB 259 CG10407-PB 1..259 26..284 1344 100 Plus
CG10407-PA 259 CG10407-PA 1..259 26..284 1344 100 Plus
CG10407-PC 263 CG10407-PC 1..263 26..284 1329 98.5 Plus
CG10264-PA 270 CG10264-PA 45..261 60..274 337 32.3 Plus
CG13618-PA 252 CG13618-PA 1..249 26..281 326 30.7 Plus
CG14661-PB 246 CG14661-PB 20..246 56..284 319 28.4 Plus
CG14661-PA 246 CG14661-PA 20..246 56..284 319 28.4 Plus
CG11852-PA 250 CG11852-PA 19..246 56..281 313 30 Plus
CG14457-PB 271 CG14457-PB 7..256 40..281 300 28.8 Plus
CG14457-PC 270 CG14457-PC 7..255 40..281 297 28.9 Plus
CG17189-PC 271 CG17189-PC 2..256 34..281 280 27.9 Plus
CG17189-PB 271 CG17189-PB 2..256 34..281 280 27.9 Plus
CG2016-PD 249 CG2016-PD 19..244 56..280 274 25.6 Plus
CG2016-PB 249 CG2016-PB 19..244 56..280 274 25.6 Plus
CG2016-PE 254 CG2016-PE 19..249 56..280 258 25 Plus
CG14259-PA 289 CG14259-PA 43..272 60..281 257 28.9 Plus
CG1124-PA 246 CG1124-PA 20..223 58..261 252 27.2 Plus
CG5867-PA 262 CG5867-PA 7..259 31..282 233 21.3 Plus
CG14258-PA 258 CG14258-PA 22..245 53..273 228 27.2 Plus
to-PB 249 CG11853-PB 49..241 90..278 224 27.5 Plus
to-PA 249 CG11853-PA 49..241 90..278 224 27.5 Plus
CG2650-PA 260 CG2650-PA 3..255 31..280 221 24.8 Plus
CG14457-PA 144 CG14457-PA 1..129 157..281 208 31.8 Plus
CG11854-PB 250 CG11854-PB 46..247 84..281 205 24.8 Plus
CG5945-PB 250 CG5945-PB 28..213 63..247 199 27.3 Plus
CG5945-PA 250 CG5945-PA 28..213 63..247 199 27.3 Plus
CG17279-PD 245 CG17279-PD 13..242 53..281 198 23.1 Plus
CG31189-PB 258 CG31189-PB 23..247 59..281 187 24.1 Plus
CG2016-PC 183 CG2016-PC 1..178 104..280 186 22.3 Plus
CG33680-PA 278 CG33680-PA 38..228 66..283 178 25.5 Plus
CG7079-PB 255 CG7079-PB 18..247 55..281 164 24.8 Plus
CG7079-PA 255 CG7079-PA 18..247 55..281 164 24.8 Plus
CG34316-PA 267 CG34316-PA 37..234 82..282 156 23.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:29:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10103-PA 293 GI10103-PA 33..289 22..283 954 68.1 Plus
Dmoj\GI22650-PA 263 GI22650-PA 31..254 50..274 348 31.3 Plus
Dmoj\GI22505-PA 247 GI22505-PA 20..247 56..284 326 29.1 Plus
Dmoj\GI23924-PA 255 GI23924-PA 21..252 53..282 311 30.3 Plus
Dmoj\GI10085-PA 254 GI10085-PA 20..252 48..282 297 30.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:29:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12408-PA 265 GL12408-PA 27..261 47..283 979 74.3 Plus
Dper\GL12216-PA 269 GL12216-PA 37..260 50..274 361 32.6 Plus
Dper\GL22212-PA 266 GL22212-PA 20..223 56..261 315 31.6 Plus
Dper\GL21869-PA 240 GL21869-PA 23..238 66..282 303 31.2 Plus
Dper\GL11987-PA 250 GL11987-PA 16..246 53..281 289 28.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:29:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10301-PA 265 GA10301-PA 27..261 47..283 977 74.3 Plus
Dpse\GA10203-PA 269 GA10203-PA 37..260 50..274 362 32.6 Plus
Dpse\GA13156-PA 246 GA13156-PA 20..246 56..284 339 30.6 Plus
Dpse\GA12411-PA 253 GA12411-PA 11..251 34..282 313 30.4 Plus
Dpse\GA12999-PA 278 GA12999-PA 17..251 33..273 297 28.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:29:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25738-PA 230 GM25738-PA 3..229 57..283 1186 98.7 Plus
Dsec\GM24280-PA 270 GM24280-PA 45..261 60..274 345 31.8 Plus
Dsec\GM10668-PA 246 GM10668-PA 20..246 56..284 318 28.4 Plus
Dsec\GM17820-PA 250 GM17820-PA 16..247 53..282 317 29.5 Plus
Dsec\GM22460-PA 273 GM22460-PA 9..258 40..281 309 29.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:29:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20311-PA 199 GD20311-PA 3..198 57..283 995 85.5 Plus
Dsim\GD19070-PA 270 GD19070-PA 45..261 60..274 344 31.8 Plus
Dsim\GD21189-PA 250 GD21189-PA 16..247 53..282 320 29.5 Plus
Dsim\GD19644-PA 246 GD19644-PA 20..246 56..284 318 28.4 Plus
Dsim\GD15043-PA 271 GD15043-PA 7..256 40..281 309 29.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:29:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23840-PA 260 GJ23840-PA 1..256 26..283 987 69.4 Plus
Dvir\GJ23379-PA 264 GJ23379-PA 9..255 35..274 347 30.4 Plus
Dvir\GJ10108-PA 247 GJ10108-PA 20..247 56..284 334 29.6 Plus
Dvir\GJ24016-PA 251 GJ24016-PA 17..248 53..282 323 31.2 Plus
Dvir\GJ23820-PA 254 GJ23820-PA 9..252 34..282 309 30.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:29:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14019-PA 258 GK14019-PA 23..254 52..283 1008 78 Plus
Dwil\GK13256-PA 268 GK13256-PA 36..259 50..274 346 32.3 Plus
Dwil\GK13450-PA 250 GK13450-PA 19..247 56..282 331 31.2 Plus
Dwil\GK14051-PA 224 GK14051-PA 1..224 59..284 315 28.3 Plus
Dwil\GK16767-PA 272 GK16767-PA 30..245 60..273 290 28.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:29:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26341-PA 259 GE26341-PA 1..258 26..283 1248 95.3 Plus
Dyak\GE24362-PA 269 GE24362-PA 44..260 60..274 345 31.8 Plus
Dyak\GE23494-PA 251 GE23494-PA 1..249 26..282 329 30.6 Plus
Dyak\GE25321-PA 246 GE25321-PA 20..246 56..284 323 28.8 Plus
Dyak\GE25318-PA 246 GE25318-PA 20..246 56..284 323 28.8 Plus

AT18312.hyp Sequence

Translation from 34 to 854

> AT18312.hyp
DHCQSFKEIARKHKMNQYFLTGLLLVLGVVLHIDWTTAKPPAKKADQLPS
FLKVCHRNAPDLDTCVRESYEELRPRLMEGIPELYIPAMEPLVVPQVKMD
QDSGAIYLHSVYRNVKVTGISKHTVNELRLEPSKLKFILSLTFPKLHMES
DYSIKGKIMMMPLLGDGHCKVDLVNITMRTELIGQEYKKNGANFLKINTV
KVKYELSDVHIHLDNLFNGDKALGDRMNEFLNENWKALAEEVRPLMTKAL
VDILRASVDKLFASFSYDDLLPM*

AT18312.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:03:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG10407-PB 259 CG10407-PB 1..259 15..273 1344 100 Plus
CG10407-PA 259 CG10407-PA 1..259 15..273 1344 100 Plus
CG10264-PA 270 CG10264-PA 45..261 49..263 337 32.3 Plus
CG13618-PA 252 CG13618-PA 1..249 15..270 326 30.7 Plus
CG14661-PB 246 CG14661-PB 20..246 45..273 319 28.4 Plus