Clone AT18408 Report

Search the DGRC for AT18408

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:184
Well:8
Vector:pOTB7
Associated Gene/TranscriptCG14840-RA
Protein status:AT18408.pep: gold
Preliminary Size:903
Sequenced Size:1039

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14840 2002-01-01 Sim4 clustering to Release 2
CG14840 2002-02-26 Blastp of sequenced clone
CG14840 2003-01-01 Sim4 clustering to Release 3
CG14840 2008-04-29 Release 5.5 accounting
CG14840 2008-08-15 Release 5.9 accounting
CG14840 2008-12-18 5.12 accounting

Clone Sequence Records

AT18408.complete Sequence

1039 bp (1039 high quality bases) assembled on 2002-02-26

GenBank Submission: AY089356

> AT18408.complete
TCCAAATATTTGATCGGAATATGCCTGGCACGAAAGCGCTGCTCCTCGTC
CTGCTACTGCTGCGTGCGTTCCCTCGACTGGAGAGCTACCACTACCGACC
CGCCGAAACGAATGACAAGCAATGCCTGTCCGCATTGTACGGCGATGCCA
GCATCGATGGAACTGGTGGGGCGGGCGGTTTGGGAGGCGGATCCGAAGGC
TGTGGGGAACCTAATTCGAAGAAAGGGGTTGGCTGCAGCAGCGGAACCGG
CGTCTTTGGTCGCGGAGATCCCAAGCAGAAGGCCTCCAACATTGCCCAAA
AAGCCGCCCAGGAGGCCAAGGCAGCCAGCGATTCGCAGATGGCAGCTGCC
GAGGCGGCTGCATCCCAGGTCAAAAACGAACTGGCCGCCAAGGCAGCTCA
ATCCGCTCGTGCGGCGGAGGCGGCACTGGCCGGAAAGCAGCAGATTGTTG
AACAGCTGCAGCAGGAGATGACCGAGGCGGATGCGGTTGTCACTGAGGTG
ACCTCGTCCCTACAAAACACCCAAGCGAATGCCAATGCCGCCGCATCGGC
TGCCCACGAGGCCCAATCGCAACTCAATCAGCTGAAGAACCTTGTGATAG
CCGCCACGTCCAATCTGGCCAATATCGAGAACGTGGCCAGTGGAGCGCAG
CAGGAGCTGGCCGAGAAGACGCAGCTCCTGGAGGCTGCCAAGCACCGGGT
GGAGAATCTAACCCGCCAGATGACCGAGGCCAAGACGGACTTCGAGAAGA
CCAAGCAGGCGGCCTACAAAGCGGCCTGTGCTGCAGTGGAGGCCAAGCAG
AAGGCACAGAGGTCTCGTCGAATGACCCACCGCCAGCAGGTGCGCTGGGG
TCCGCGCAAGATGGCCGGAAAGTTTTCCGGCGCAGGCAGCCAAAATCTAG
CACCGAATTCGGGGATCAACTGATCTTTTCTATATTTTGTTACGTTTCGA
TTTCGGTTTAATAAGTTTCCTATTAAAAGATAATGGTTTTATAACTAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

AT18408.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:23:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG14840-RA 1006 CG14840-RA 11..1006 1..996 4980 100 Plus
CG14841-RA 956 CG14841-RA 719..788 743..812 200 85.7 Plus
CG14841-RA 956 CG14841-RA 255..443 279..467 195 73.5 Plus
CG11694-RA 883 CG11694-RA 558..635 627..704 195 83.3 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:44:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 10085029..10086024 996..1 4965 99.9 Minus
chr3R 27901430 chr3R 10086380..10086449 812..743 200 85.7 Minus
chr3R 27901430 chr3R 10086725..10086913 467..279 195 73.5 Minus
chr3R 27901430 chr3R 4137466..4137543 704..627 195 83.3 Minus
chr2R 21145070 chr2R 12713663..12713724 744..805 190 87.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:52:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:44:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14260203..14261203 1001..1 5005 100 Minus
3R 32079331 3R 14261559..14261628 812..743 200 85.7 Minus
3R 32079331 3R 8311451..8311528 704..627 195 83.3 Minus
3R 32079331 3R 14261904..14262092 467..279 195 73.5 Minus
2R 25286936 2R 16826480..16826541 744..805 190 87.1 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:53:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 14001034..14002034 1001..1 5005 100 Minus
3R 31820162 3R 14002390..14002459 812..743 200 85.7 Minus
3R 31820162 3R 14002735..14002923 467..279 195 73.5 Minus
3R 31820162 3R 8052282..8052359 704..627 195 83.3 Minus
2R 25260384 2R 16827679..16827740 744..805 190 87 Plus
Blast to na_te.dros performed on 2019-03-16 08:44:15 has no hits.

AT18408.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:45:21 Download gff for AT18408.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 10085029..10086024 1..996 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:12:13 Download gff for AT18408.complete
Subject Subject Range Query Range Percent Splice Strand
CG14840-RA 1..903 21..923 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:34:30 Download gff for AT18408.complete
Subject Subject Range Query Range Percent Splice Strand
CG14840-RA 1..903 21..923 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:53:28 Download gff for AT18408.complete
Subject Subject Range Query Range Percent Splice Strand
CG14840-RA 1..903 21..923 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:06:35 Download gff for AT18408.complete
Subject Subject Range Query Range Percent Splice Strand
CG14840-RA 1..903 21..923 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:48:23 Download gff for AT18408.complete
Subject Subject Range Query Range Percent Splice Strand
CG14840-RA 1..903 21..923 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:00:15 Download gff for AT18408.complete
Subject Subject Range Query Range Percent Splice Strand
CG14840-RA 11..1006 1..996 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:34:30 Download gff for AT18408.complete
Subject Subject Range Query Range Percent Splice Strand
CG14840-RA 11..1006 1..996 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:53:28 Download gff for AT18408.complete
Subject Subject Range Query Range Percent Splice Strand
CG14840-RA 11..1006 1..996 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:06:36 Download gff for AT18408.complete
Subject Subject Range Query Range Percent Splice Strand
CG14840-RA 11..1006 1..996 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:48:23 Download gff for AT18408.complete
Subject Subject Range Query Range Percent Splice Strand
CG14840-RA 11..1006 1..996 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:45:21 Download gff for AT18408.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14260208..14261203 1..996 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:45:21 Download gff for AT18408.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14260208..14261203 1..996 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:45:21 Download gff for AT18408.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14260208..14261203 1..996 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:53:28 Download gff for AT18408.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10085930..10086925 1..996 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:40:27 Download gff for AT18408.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14001039..14002034 1..996 100   Minus

AT18408.hyp Sequence

Translation from 2 to 922

> AT18408.hyp
QIFDRNMPGTKALLLVLLLLRAFPRLESYHYRPAETNDKQCLSALYGDAS
IDGTGGAGGLGGGSEGCGEPNSKKGVGCSSGTGVFGRGDPKQKASNIAQK
AAQEAKAASDSQMAAAEAAASQVKNELAAKAAQSARAAEAALAGKQQIVE
QLQQEMTEADAVVTEVTSSLQNTQANANAAASAAHEAQSQLNQLKNLVIA
ATSNLANIENVASGAQQELAEKTQLLEAAKHRVENLTRQMTEAKTDFEKT
KQAAYKAACAAVEAKQKAQRSRRMTHRQQVRWGPRKMAGKFSGAGSQNLA
PNSGIN*

AT18408.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:03:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG14840-PA 300 CG14840-PA 1..300 7..306 1484 100 Plus
CG14841-PA 274 CG14841-PA 59..265 61..273 559 59.6 Plus
CG34459-PC 305 CG34459-PC 59..295 34..268 521 49.2 Plus
CG34459-PB 305 CG34459-PB 59..295 34..268 521 49.2 Plus
CG34459-PA 305 CG34459-PA 59..295 34..268 521 49.2 Plus

AT18408.pep Sequence

Translation from 20 to 922

> AT18408.pep
MPGTKALLLVLLLLRAFPRLESYHYRPAETNDKQCLSALYGDASIDGTGG
AGGLGGGSEGCGEPNSKKGVGCSSGTGVFGRGDPKQKASNIAQKAAQEAK
AASDSQMAAAEAAASQVKNELAAKAAQSARAAEAALAGKQQIVEQLQQEM
TEADAVVTEVTSSLQNTQANANAAASAAHEAQSQLNQLKNLVIAATSNLA
NIENVASGAQQELAEKTQLLEAAKHRVENLTRQMTEAKTDFEKTKQAAYK
AACAAVEAKQKAQRSRRMTHRQQVRWGPRKMAGKFSGAGSQNLAPNSGIN
*

AT18408.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:08:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23179-PA 289 GF23179-PA 1..275 1..279 602 74.6 Plus
Dana\GF23178-PA 296 GF23178-PA 92..281 78..267 398 68.4 Plus
Dana\GF11413-PA 470 GF11413-PA 108..297 78..267 314 57.9 Plus
Dana\GF16773-PA 273 GF16773-PA 55..237 85..267 301 56.3 Plus
Dana\GF16670-PA 204 GF16670-PA 6..166 85..245 286 59 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:08:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21391-PA 298 GG21391-PA 1..298 1..300 890 89.3 Plus
Dere\GG20633-PA 462 GG20633-PA 61..286 38..262 407 50.6 Plus
Dere\GG21383-PA 244 GG21383-PA 17..230 55..267 394 58.6 Plus
Dere\GG11426-PA 286 GG11426-PA 48..238 77..267 316 56.5 Plus
Dere\GG17458-PA 259 GG17458-PA 26..256 43..277 315 51.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:08:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19678-PA 273 GH19678-PA 12..264 12..281 549 65.8 Plus
Dgri\GH19677-PA 263 GH19677-PA 28..261 40..271 451 65.8 Plus
Dgri\GH19676-PA 252 GH19676-PA 2..250 7..267 422 60.5 Plus
Dgri\GH17423-PA 238 GH17423-PA 20..225 56..269 338 55.1 Plus
Dgri\GH19706-PA 199 GH19706-PA 17..199 85..267 276 44.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:11:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG14840-PA 300 CG14840-PA 1..300 1..300 1484 100 Plus
CG14841-PA 274 CG14841-PA 59..265 55..267 559 59.6 Plus
CG34459-PC 305 CG34459-PC 59..295 28..262 521 49.2 Plus
CG34459-PB 305 CG34459-PB 59..295 28..262 521 49.2 Plus
CG34459-PA 305 CG34459-PA 59..295 28..262 521 49.2 Plus
CG11694-PA 261 CG11694-PA 6..254 9..276 496 46.6 Plus
CG14354-PA 298 CG14354-PA 58..244 81..267 485 56.1 Plus
CG14839-PA 282 CG14839-PA 5..260 4..265 371 37.8 Plus
CG12985-PA 370 CG12985-PA 121..295 87..261 360 44 Plus
CG11698-PA 262 CG11698-PA 50..234 87..271 320 38.4 Plus
CG33257-PA 330 CG33257-PA 13..271 7..265 263 30.1 Plus
CG11693-PA 318 CG11693-PA 111..283 90..262 214 33.5 Plus
CG11693-PB 323 CG11693-PB 116..288 90..262 214 33.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:08:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24535-PA 266 GI24535-PA 15..266 15..293 548 61.3 Plus
Dmoj\GI24533-PA 270 GI24533-PA 64..255 79..270 447 69.3 Plus
Dmoj\GI20828-PA 301 GI20828-PA 82..285 60..267 438 57.2 Plus
Dmoj\GI24534-PA 266 GI24534-PA 63..256 74..267 403 72.2 Plus
Dmoj\GI22752-PA 265 GI22752-PA 37..251 37..267 341 52.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:08:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23292-PA 280 GL23292-PA 1..272 1..280 479 60.1 Plus
Dper\GL17739-PA 409 GL17739-PA 100..296 61..262 375 53.5 Plus
Dper\GL24119-PA 264 GL24119-PA 63..239 82..258 321 61 Plus
Dper\GL23291-PA 219 GL23291-PA 4..209 5..216 305 51.4 Plus
Dper\GL21537-PA 289 GL21537-PA 59..224 79..244 286 51.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:08:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27211-PA 280 GA27211-PA 67..272 77..280 444 71.8 Plus
Dpse\GA13287-PA 278 GA13287-PA 4..261 5..268 426 54.5 Plus
Dpse\GA27677-PA 402 GA27677-PA 45..292 40..262 375 46.6 Plus
Dpse\GA11146-PB 267 GA11146-PB 66..251 82..267 359 61.3 Plus
Dpse\GA26323-PA 289 GA26323-PA 59..224 79..244 298 53 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:08:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25864-PA 302 GM25864-PA 1..302 1..300 1025 93.7 Plus
Dsec\GM25863-PA 265 GM25863-PA 59..261 55..263 410 59.3 Plus
Dsec\GM21727-PA 455 GM21727-PA 59..279 49..262 391 52.7 Plus
Dsec\GM10266-PA 296 GM10266-PA 59..244 82..267 314 55.9 Plus
Dsec\GM26352-PA 261 GM26352-PA 6..223 9..245 297 48.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:08:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20435-PA 302 GD20435-PA 1..302 1..300 1022 93.4 Plus
Dsim\GD20434-PA 264 GD20434-PA 59..260 56..263 407 59.1 Plus
Dsim\GD11222-PA 470 GD11222-PA 74..294 49..262 397 53.2 Plus
Dsim\GD21236-PA 296 GD21236-PA 59..244 82..267 305 55.4 Plus
Dsim\GD17372-PA 360 GD17372-PA 116..293 85..262 181 42.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:08:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22602-PA 271 GJ22602-PA 16..265 16..285 478 61.2 Plus
Dvir\GJ20562-PA 352 GJ20562-PA 50..248 61..262 447 58.4 Plus
Dvir\GJ22601-PA 233 GJ22601-PA 39..225 83..269 418 78.1 Plus
Dvir\GJ22600-PA 262 GJ22600-PA 6..260 10..269 403 61.1 Plus
Dvir\GJ22753-PA 219 GJ22753-PA 22..211 84..276 353 57.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:08:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10892-PA 290 GK10892-PA 6..261 7..262 432 64 Plus
Dwil\GK22021-PA 418 GK22021-PA 112..296 78..262 418 65.4 Plus
Dwil\GK14387-PA 246 GK14387-PA 43..240 73..271 360 57.8 Plus
Dwil\GK12192-PA 270 GK12192-PA 73..259 81..267 326 49.2 Plus
Dwil\GK11064-PA 264 GK11064-PA 2..226 1..246 288 47.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:08:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10040-PA 301 GE10040-PA 1..301 1..300 983 89.7 Plus
Dyak\GE11823-PA 449 GE11823-PA 11..282 7..262 427 47.4 Plus
Dyak\GE10039-PA 278 GE10039-PA 9..264 1..267 387 50.6 Plus
Dyak\GE23621-PA 296 GE23621-PA 58..248 77..267 375 56 Plus
Dyak\GE24857-PA 260 GE24857-PA 54..244 77..267 300 58.6 Plus