Clone AT18493 Report

Search the DGRC for AT18493

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:184
Well:93
Vector:pOTB7
Associated Gene/TranscriptCG15878-RA
Protein status:AT18493.pep: gold
Preliminary Size:1456
Sequenced Size:1642

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15878 2002-01-01 Sim4 clustering to Release 2
CG15878 2002-05-17 Blastp of sequenced clone
CG15878 2003-01-01 Sim4 clustering to Release 3
CG15878 2008-04-29 Release 5.5 accounting
CG15878 2008-08-15 Release 5.9 accounting
CG15878 2008-12-18 5.12 accounting

Clone Sequence Records

AT18493.complete Sequence

1642 bp (1642 high quality bases) assembled on 2002-05-17

GenBank Submission: AY118695

> AT18493.complete
ACAACATCAAAATTTCCAGAAACAACAGCTTTATCGATATTCCTGGTAGA
CCCCGGTGACCCTGGGAGTGTGTTCTCGACCCCCGACAGGAGCAGTCACA
CCCCGCCAAGATGTCCTTTCACCGGATCAATGTCAAACAAGCTTCCATAG
CCGCCCGCCAGCGGCAGTCGCGGACGACCAGGATGACCCGGCACACCATT
TTCAATTTGAAGAGACCCATTACCTTCCAGGTGCGCAAATCGCTGGTGGA
GTACGTGGACATGGAGCTAGCGGACATGGACACCTCCGTGTTCTATCAGC
GCATCTTTATCCTGGCCAAGAACTGCCACTTGACGCCAGTTGTGTCCAAC
GAGGAGTTGCTCGCCGACGCGGTGGTGGAACAGGCTGAGCCTGAACCAGA
TGAAGCGGCGCCCATACAGTTCATGGAGGATGTGATCTTCGACAACACTG
AAACGGAATCGCCCATGAACACGACGGCGGATCCAGCGCCCATTCCTGCG
CCGGAAGAAGGTGCGACGGAAACTGCAGAAGTAGTTACCCACATGTTCCG
TTTCAGTGAAGACGATCCAGAAGAAGACTTTGTCGAAGAGGAGGAACTGG
AAATGGACACCCAAGCACCCGATCAGCCCAAGGACTTCTTTGCCATCTTC
AGCGAGCGCCTGCAGGAGCTGCATAAGCAGTGCAAGGCGCTGGCCATCAC
GCCGGATCCCATGTGCGGATTGTTTCTCCACATGGGCGAATACAGCATGC
TGATGCTGGAGTCCTCCGAGGACATGATCGGATGCTTCACACGGGCCCTG
GCCGATTGCTGTGAGACTTTCTGGTTGATGAATCGCGTCTTCCAGATCGA
GGATCACGTGCAGGAGCTCTATACAAAAGAACTTATGTTTCGCCGCATCC
CTTCCGTCTTTCTGAACGAGAAGTTCCCCACCTCCACGCCCACCGATGAG
TATCTCATGGGAAAACAGCATCTGATCATCAAGGATAAGCTGCTGACCAT
CTGCCGGCTGCTCTCGGAGGGTCAGCAAGTGGATCCGGACGGGATCTCCA
CGCGAGAAAGCGACATGGAGGACGATATGCCAAAGTCAAAGTCCAAAAGC
TCAATCCTAAGCGAACACTTGCCGGTGGAGGTGTTCCGGAAGCACCTGCC
CGAGATCCAGCGCATCGAACTGGTTTTGGCATCCACACGATTCTACTACG
AGTTGGGAGAGTTCGCCTGGCTCTACGGCCGGGTGCCCTTCTCGCCCGAC
GAGGATGGTCTCTTCTGGCCCATACAGAGCAACTACACTCCTCCGAACAT
CTTCCGGCGCACTCCCTACGACATAAATCTCACATTTGGTGAGTATGCCG
CGGAGGCTAGTAAGAGAAAAACCCAAGGAAGCCTGGTCGGAAGTATAGCT
GACGAGGAGGAGGCTCCACCAAATGAAGAGACCCCGCCAAAGACTGAATA
AGTGGTTTGGTAATTTAGTTGTATTTTAACCTTAGATTTTGTGTCCCTTG
TATTTTCTAAACCGTCAAGCGAACAAACTGTCAATTCTAAAGAATTCGCG
CCTCAGCAAGTGTGTTTGTTTTAGCATAAACCTAAAGATTTCGCGTACAA
ATAAAGAAATCCCATTTATAAAACAAAAAAAAAAAAAAAAAA

AT18493.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:06:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG15878-RA 1631 CG15878-RA 6..1631 1..1624 7880 99 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:15:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 2210279..2211904 1624..1 7870 99.1 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:52:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:15:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2210871..2212498 1626..1 7880 99.1 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 2210871..2212498 1626..1 7890 99 Minus
Blast to na_te.dros performed on 2019-03-15 15:15:08 has no hits.

AT18493.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:15:54 Download gff for AT18493.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 2210279..2211904 1..1624 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:12:26 Download gff for AT18493.complete
Subject Subject Range Query Range Percent Splice Strand
CG15878-RA 1..1341 111..1451 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:49:47 Download gff for AT18493.complete
Subject Subject Range Query Range Percent Splice Strand
CG15878-RA 1..1341 111..1451 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:09:20 Download gff for AT18493.complete
Subject Subject Range Query Range Percent Splice Strand
CG15878-RA 1..1341 111..1451 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:42:22 Download gff for AT18493.complete
Subject Subject Range Query Range Percent Splice Strand
CG15878-RA 1..1341 111..1451 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:33:09 Download gff for AT18493.complete
Subject Subject Range Query Range Percent Splice Strand
CG15878-RA 1..1341 111..1451 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:26:52 Download gff for AT18493.complete
Subject Subject Range Query Range Percent Splice Strand
CG15878-RA 6..1631 1..1624 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:49:47 Download gff for AT18493.complete
Subject Subject Range Query Range Percent Splice Strand
CG15878-RA 6..1631 1..1624 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:09:20 Download gff for AT18493.complete
Subject Subject Range Query Range Percent Splice Strand
CG15878-RA 6..1631 1..1624 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:42:22 Download gff for AT18493.complete
Subject Subject Range Query Range Percent Splice Strand
CG15878-RA 6..1631 1..1624 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:33:09 Download gff for AT18493.complete
Subject Subject Range Query Range Percent Splice Strand
CG15878-RA 6..1631 1..1624 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:15:54 Download gff for AT18493.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2210873..2212498 1..1624 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:15:54 Download gff for AT18493.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2210873..2212498 1..1624 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:15:54 Download gff for AT18493.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2210873..2212498 1..1624 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:09:20 Download gff for AT18493.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2210873..2212498 1..1624 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:14:41 Download gff for AT18493.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2210873..2212498 1..1624 99   Minus

AT18493.hyp Sequence

Translation from 110 to 1450

> AT18493.hyp
MSFHRINVKQASIAARQRQSRTTRMTRHTIFNLKRPITFQVRKSLVEYVD
MELADMDTSVFYQRIFILAKNCHLTPVVSNEELLADAVVEQAEPEPDEAA
PIQFMEDVIFDNTETESPMNTTADPAPIPAPEEGATETAEVVTHMFRFSE
DDPEEDFVEEEELEMDTQAPDQPKDFFAIFSERLQELHKQCKALAITPDP
MCGLFLHMGEYSMLMLESSEDMIGCFTRALADCCETFWLMNRVFQIEDHV
QELYTKELMFRRIPSVFLNEKFPTSTPTDEYLMGKQHLIIKDKLLTICRL
LSEGQQVDPDGISTRESDMEDDMPKSKSKSSILSEHLPVEVFRKHLPEIQ
RIELVLASTRFYYELGEFAWLYGRVPFSPDEDGLFWPIQSNYTPPNIFRR
TPYDINLTFGEYAAEASKRKTQGSLVGSIADEEEAPPNEETPPKTE*

AT18493.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:03:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG15878-PA 446 CG15878-PA 1..446 1..446 2334 100 Plus

AT18493.pep Sequence

Translation from 110 to 1450

> AT18493.pep
MSFHRINVKQASIAARQRQSRTTRMTRHTIFNLKRPITFQVRKSLVEYVD
MELADMDTSVFYQRIFILAKNCHLTPVVSNEELLADAVVEQAEPEPDEAA
PIQFMEDVIFDNTETESPMNTTADPAPIPAPEEGATETAEVVTHMFRFSE
DDPEEDFVEEEELEMDTQAPDQPKDFFAIFSERLQELHKQCKALAITPDP
MCGLFLHMGEYSMLMLESSEDMIGCFTRALADCCETFWLMNRVFQIEDHV
QELYTKELMFRRIPSVFLNEKFPTSTPTDEYLMGKQHLIIKDKLLTICRL
LSEGQQVDPDGISTRESDMEDDMPKSKSKSSILSEHLPVEVFRKHLPEIQ
RIELVLASTRFYYELGEFAWLYGRVPFSPDEDGLFWPIQSNYTPPNIFRR
TPYDINLTFGEYAAEASKRKTQGSLVGSIADEEEAPPNEETPPKTE*

AT18493.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:55:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24929-PA 458 GF24929-PA 5..458 1..446 1384 60.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:55:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14528-PA 444 GG14528-PA 1..444 1..446 1900 86.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:55:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16484-PA 499 GH16484-PA 10..454 11..419 980 48.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:17:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG15878-PA 446 CG15878-PA 1..446 1..446 2334 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:55:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12156-PA 491 GI12156-PA 5..448 5..419 984 48.3 Plus
Dmoj\GI12157-PA 450 GI12157-PA 1..436 1..398 904 48 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:55:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24625-PA 406 GL24625-PA 277..369 327..421 350 70.5 Plus
Dper\GL24625-PA 406 GL24625-PA 6..144 4..134 294 51.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:55:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13999-PA 568 GA13999-PA 6..343 4..304 818 52.2 Plus
Dpse\GA13999-PA 568 GA13999-PA 440..558 327..444 349 60.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:55:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14133-PA 445 GM14133-PA 1..445 1..446 2142 95.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:55:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13403-PA 426 GD13403-PA 22..426 41..446 1941 95.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:55:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13435-PA 475 GJ13435-PA 16..432 19..419 1044 53.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:55:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12597-PA 544 GK12597-PA 1..483 1..419 1066 47.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:55:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20877-PA 447 GE20877-PA 1..447 1..446 1926 84.1 Plus