Clone AT18545 Report

Search the DGRC for AT18545

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:185
Well:45
Vector:pOTB7
Associated Gene/TranscriptPsf3-RA
Protein status:AT18545.pep: gold
Preliminary Size:639
Sequenced Size:1176

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2222 2002-01-01 Sim4 clustering to Release 2
CG2222 2002-01-18 Blastp of sequenced clone
CG2222 2003-01-01 Sim4 clustering to Release 3
Psf3 2008-04-29 Release 5.5 accounting
Psf3 2008-08-15 Release 5.9 accounting
Psf3 2008-12-18 5.12 accounting

Clone Sequence Records

AT18545.complete Sequence

1176 bp (1176 high quality bases) assembled on 2002-01-18

GenBank Submission: AY089361

> AT18545.complete
CGATAGGCGATAGGCCGCGCACTTAAGAAATTGAATTTACCTAAAGTAAA
CACCAAACGAATCATAAAGCTGGGCCGCGCAATGAACGGAATGAACTATT
TTCCGAACTATTACTCCATCGAGGACATATTCGTGACCCAGGAGAAGGTG
GAATGTCGGGTGAACACCAAGCTGCAGCGGATGGGATTCCTGGACTCCGG
CGCGGAATCGGATGACCTGGAGCCCGGCAGGACGGTCAATCTGCCGTTGT
GGTACATCAAGGAGCTGAAGGTAAACAATGCCTACTTCACCGTCGCCGTG
CCAGATATCTATCGCAATGTGCATAAGGCCGTCTGCGAGGCGGAGACCAC
GCACATCGAGCTGGGACGCCTGCACCCGTACTTCTACGAGTTCGGTCGCT
ATCTGACGCCCTACGATCGCAACCATGTCATCGGCCGCATCATCTTCGAA
ACGCTGCGCCAGAGGGTACGTCATCTCCTGGACATCTCGAAGAGCGACGG
ACAGGCAGCCAAGGCGGAGCATCGACTGGATAACATCGAGGCCAAGCTGC
ACGAGGCTGGAGTGCGCACCAACAGTCAGTACATCGAATGGCTGCAGATG
ACGGGCAACAAGATTCGCACCTCGGAGCTGGTCGAGGAGCACCAAAAGAA
GCGGCGACGTGCGGATCGCAGCGATGACGAGGGCGATGCTCTGCCCAACA
GCAAGCGGGCCACCTTGTAACAAGCAGAGTAAAACAACAAAAACAGACCA
CTGATGTACTGTGGAACTGTAGCAACTTTATTTCGTCCATTCGTTCGGTG
GCCATAGGGCAGCCTGACCTCTCAAAAATACACTTTTCATCTACTCTATG
CACACGGCTAAATCCATTTGTACAGTTCAAAATACATGGGTTTCGCATAC
ATCTACGCATAACTAAGCATCCAATCCGGGACCGGTCTTAAACAAAACAC
ATAGGAGCTGCCGGTCTGCGTTTTTCATTGACTTGGCAATAAGCCAAAGC
GATGTTGCGCCACATTGTTACATATAAATAGTTAACTACATATATAATTA
TATTCTTGTAAGCTCAATTAAAATTTGATTTTGTGCTAGTTTCACATACA
GTTCACAAATAAACATATACACCAATGTCCAGCGTAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAA

AT18545.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:29:34
Subject Length Description Subject Range Query Range Score Percent Strand
Psf3.a 2165 Psf3.a 513..1648 1..1136 5650 99.8 Plus
Psf3.b 2342 Psf3.b 690..1825 1..1136 5650 99.8 Plus
Psf3-RA 1755 Psf3-RA 103..1238 1..1136 5650 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:44:41
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 10275371..10275930 1135..576 2770 99.6 Minus
chrX 22417052 chrX 10275988..10276383 579..184 1980 100 Minus
chrX 22417052 chrX 10276450..10276634 185..1 925 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:52:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:44:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10383870..10384430 1136..576 2790 99.8 Minus
X 23542271 X 10384488..10384883 579..184 1980 100 Minus
X 23542271 X 10384950..10385134 185..1 910 99.5 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:58:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 10391968..10392528 1136..576 2790 99.8 Minus
X 23527363 X 10392586..10392981 579..184 1980 100 Minus
X 23527363 X 10393048..10393232 185..1 910 99.4 Minus
Blast to na_te.dros performed on 2019-03-16 18:44:40 has no hits.

AT18545.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:46:01 Download gff for AT18545.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 10275371..10275926 580..1135 99 <- Minus
chrX 10275988..10276382 185..579 100 <- Minus
chrX 10276451..10276634 1..184 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:12:31 Download gff for AT18545.complete
Subject Subject Range Query Range Percent Splice Strand
Psf3-RA 1..639 82..720 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:47:23 Download gff for AT18545.complete
Subject Subject Range Query Range Percent Splice Strand
Psf3-RA 1..639 82..720 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:25:31 Download gff for AT18545.complete
Subject Subject Range Query Range Percent Splice Strand
Psf3-RA 1..639 82..720 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:15:16 Download gff for AT18545.complete
Subject Subject Range Query Range Percent Splice Strand
Psf3-RA 1..639 82..720 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:48:51 Download gff for AT18545.complete
Subject Subject Range Query Range Percent Splice Strand
Psf3-RA 1..639 82..720 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:11:33 Download gff for AT18545.complete
Subject Subject Range Query Range Percent Splice Strand
Psf3-RA 1..1135 1..1135 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:47:23 Download gff for AT18545.complete
Subject Subject Range Query Range Percent Splice Strand
Psf3-RA 1..1135 1..1135 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:31 Download gff for AT18545.complete
Subject Subject Range Query Range Percent Splice Strand
Psf3-RA 16..1150 1..1135 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:15:16 Download gff for AT18545.complete
Subject Subject Range Query Range Percent Splice Strand
Psf3-RA 1..1135 1..1135 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:48:51 Download gff for AT18545.complete
Subject Subject Range Query Range Percent Splice Strand
Psf3-RA 16..1150 1..1135 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:46:01 Download gff for AT18545.complete
Subject Subject Range Query Range Percent Splice Strand
X 10384488..10384882 185..579 100 <- Minus
X 10383871..10384426 580..1135 99 <- Minus
X 10384951..10385134 1..184 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:46:01 Download gff for AT18545.complete
Subject Subject Range Query Range Percent Splice Strand
X 10384488..10384882 185..579 100 <- Minus
X 10383871..10384426 580..1135 99 <- Minus
X 10384951..10385134 1..184 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:46:01 Download gff for AT18545.complete
Subject Subject Range Query Range Percent Splice Strand
X 10384488..10384882 185..579 100 <- Minus
X 10383871..10384426 580..1135 99 <- Minus
X 10384951..10385134 1..184 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:31 Download gff for AT18545.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10277904..10278459 580..1135 99 <- Minus
arm_X 10278521..10278915 185..579 100 <- Minus
arm_X 10278984..10279167 1..184 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:49:02 Download gff for AT18545.complete
Subject Subject Range Query Range Percent Splice Strand
X 10391969..10392524 580..1135 99 <- Minus
X 10392586..10392980 185..579 100 <- Minus
X 10393049..10393232 1..184 99   Minus

AT18545.hyp Sequence

Translation from 81 to 719

> AT18545.hyp
MNGMNYFPNYYSIEDIFVTQEKVECRVNTKLQRMGFLDSGAESDDLEPGR
TVNLPLWYIKELKVNNAYFTVAVPDIYRNVHKAVCEAETTHIELGRLHPY
FYEFGRYLTPYDRNHVIGRIIFETLRQRVRHLLDISKSDGQAAKAEHRLD
NIEAKLHEAGVRTNSQYIEWLQMTGNKIRTSELVEEHQKKRRRADRSDDE
GDALPNSKRATL*

AT18545.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:04:05
Subject Length Description Subject Range Query Range Score Percent Strand
Psf3-PC 212 CG2222-PC 1..212 1..212 1119 100 Plus
Psf3-PB 212 CG2222-PB 1..212 1..212 1119 100 Plus
Psf3-PA 212 CG2222-PA 1..212 1..212 1119 100 Plus

AT18545.pep Sequence

Translation from 81 to 719

> AT18545.pep
MNGMNYFPNYYSIEDIFVTQEKVECRVNTKLQRMGFLDSGAESDDLEPGR
TVNLPLWYIKELKVNNAYFTVAVPDIYRNVHKAVCEAETTHIELGRLHPY
FYEFGRYLTPYDRNHVIGRIIFETLRQRVRHLLDISKSDGQAAKAEHRLD
NIEAKLHEAGVRTNSQYIEWLQMTGNKIRTSELVEEHQKKRRRADRSDDE
GDALPNSKRATL*

AT18545.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:29:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19560-PA 209 GF19560-PA 1..209 4..212 1074 93.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:29:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18923-PA 212 GG18923-PA 1..212 1..212 1135 99.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:29:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12717-PA 241 GH12717-PA 22..217 1..197 933 85.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:10:11
Subject Length Description Subject Range Query Range Score Percent Strand
Psf3-PC 212 CG2222-PC 1..212 1..212 1119 100 Plus
Psf3-PB 212 CG2222-PB 1..212 1..212 1119 100 Plus
Psf3-PA 212 CG2222-PA 1..212 1..212 1119 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:29:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15393-PA 213 GI15393-PA 2..194 4..197 941 86.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:29:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26783-PA 208 GL26783-PA 1..208 4..212 1026 89.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:29:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15311-PA 208 GA15311-PA 1..208 4..212 1026 89.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:29:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11316-PA 212 GM11316-PA 1..212 1..212 1142 99.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:29:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16035-PA 212 GD16035-PA 1..212 1..212 1137 99.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:29:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14790-PA 222 GJ14790-PA 8..222 1..212 973 82.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:29:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10262-PA 213 GK10262-PA 2..213 3..212 941 81.6 Plus
Dwil\GK21656-PA 206 GK21656-PA 1..205 4..205 882 78.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:29:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15395-PA 212 GE15395-PA 1..212 1..212 1144 100 Plus