BDGP Sequence Production Resources |
Search the DGRC for AT18545
Library: | AT |
Tissue Source: | Drosophila melanogaster adult testes |
Created by: | Ling Hong |
Date Registered: | 2000-06-08 |
Comments: | Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7 |
Original Plate Number: | 185 |
Well: | 45 |
Vector: | pOTB7 |
Associated Gene/Transcript | Psf3-RA |
Protein status: | AT18545.pep: gold |
Preliminary Size: | 639 |
Sequenced Size: | 1176 |
Gene | Date | Evidence |
---|---|---|
CG2222 | 2002-01-01 | Sim4 clustering to Release 2 |
CG2222 | 2002-01-18 | Blastp of sequenced clone |
CG2222 | 2003-01-01 | Sim4 clustering to Release 3 |
Psf3 | 2008-04-29 | Release 5.5 accounting |
Psf3 | 2008-08-15 | Release 5.9 accounting |
Psf3 | 2008-12-18 | 5.12 accounting |
1176 bp (1176 high quality bases) assembled on 2002-01-18
GenBank Submission: AY089361
> AT18545.complete CGATAGGCGATAGGCCGCGCACTTAAGAAATTGAATTTACCTAAAGTAAA CACCAAACGAATCATAAAGCTGGGCCGCGCAATGAACGGAATGAACTATT TTCCGAACTATTACTCCATCGAGGACATATTCGTGACCCAGGAGAAGGTG GAATGTCGGGTGAACACCAAGCTGCAGCGGATGGGATTCCTGGACTCCGG CGCGGAATCGGATGACCTGGAGCCCGGCAGGACGGTCAATCTGCCGTTGT GGTACATCAAGGAGCTGAAGGTAAACAATGCCTACTTCACCGTCGCCGTG CCAGATATCTATCGCAATGTGCATAAGGCCGTCTGCGAGGCGGAGACCAC GCACATCGAGCTGGGACGCCTGCACCCGTACTTCTACGAGTTCGGTCGCT ATCTGACGCCCTACGATCGCAACCATGTCATCGGCCGCATCATCTTCGAA ACGCTGCGCCAGAGGGTACGTCATCTCCTGGACATCTCGAAGAGCGACGG ACAGGCAGCCAAGGCGGAGCATCGACTGGATAACATCGAGGCCAAGCTGC ACGAGGCTGGAGTGCGCACCAACAGTCAGTACATCGAATGGCTGCAGATG ACGGGCAACAAGATTCGCACCTCGGAGCTGGTCGAGGAGCACCAAAAGAA GCGGCGACGTGCGGATCGCAGCGATGACGAGGGCGATGCTCTGCCCAACA GCAAGCGGGCCACCTTGTAACAAGCAGAGTAAAACAACAAAAACAGACCA CTGATGTACTGTGGAACTGTAGCAACTTTATTTCGTCCATTCGTTCGGTG GCCATAGGGCAGCCTGACCTCTCAAAAATACACTTTTCATCTACTCTATG CACACGGCTAAATCCATTTGTACAGTTCAAAATACATGGGTTTCGCATAC ATCTACGCATAACTAAGCATCCAATCCGGGACCGGTCTTAAACAAAACAC ATAGGAGCTGCCGGTCTGCGTTTTTCATTGACTTGGCAATAAGCCAAAGC GATGTTGCGCCACATTGTTACATATAAATAGTTAACTACATATATAATTA TATTCTTGTAAGCTCAATTAAAATTTGATTTTGTGCTAGTTTCACATACA GTTCACAAATAAACATATACACCAATGTCCAGCGTAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 10275371..10275930 | 1135..576 | 2770 | 99.6 | Minus |
chrX | 22417052 | chrX | 10275988..10276383 | 579..184 | 1980 | 100 | Minus |
chrX | 22417052 | chrX | 10276450..10276634 | 185..1 | 925 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 10383870..10384430 | 1136..576 | 2790 | 99.8 | Minus |
X | 23542271 | X | 10384488..10384883 | 579..184 | 1980 | 100 | Minus |
X | 23542271 | X | 10384950..10385134 | 185..1 | 910 | 99.5 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 10391968..10392528 | 1136..576 | 2790 | 99.8 | Minus |
X | 23527363 | X | 10392586..10392981 | 579..184 | 1980 | 100 | Minus |
X | 23527363 | X | 10393048..10393232 | 185..1 | 910 | 99.4 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 10275371..10275926 | 580..1135 | 99 | <- | Minus |
chrX | 10275988..10276382 | 185..579 | 100 | <- | Minus |
chrX | 10276451..10276634 | 1..184 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Psf3-RA | 1..639 | 82..720 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Psf3-RA | 1..639 | 82..720 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Psf3-RA | 1..639 | 82..720 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Psf3-RA | 1..639 | 82..720 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Psf3-RA | 1..639 | 82..720 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Psf3-RA | 1..1135 | 1..1135 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Psf3-RA | 1..1135 | 1..1135 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Psf3-RA | 16..1150 | 1..1135 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Psf3-RA | 1..1135 | 1..1135 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Psf3-RA | 16..1150 | 1..1135 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 10384488..10384882 | 185..579 | 100 | <- | Minus |
X | 10383871..10384426 | 580..1135 | 99 | <- | Minus |
X | 10384951..10385134 | 1..184 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 10384488..10384882 | 185..579 | 100 | <- | Minus |
X | 10383871..10384426 | 580..1135 | 99 | <- | Minus |
X | 10384951..10385134 | 1..184 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 10384488..10384882 | 185..579 | 100 | <- | Minus |
X | 10383871..10384426 | 580..1135 | 99 | <- | Minus |
X | 10384951..10385134 | 1..184 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 10277904..10278459 | 580..1135 | 99 | <- | Minus |
arm_X | 10278521..10278915 | 185..579 | 100 | <- | Minus |
arm_X | 10278984..10279167 | 1..184 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 10391969..10392524 | 580..1135 | 99 | <- | Minus |
X | 10392586..10392980 | 185..579 | 100 | <- | Minus |
X | 10393049..10393232 | 1..184 | 99 | Minus |
Translation from 81 to 719
> AT18545.hyp MNGMNYFPNYYSIEDIFVTQEKVECRVNTKLQRMGFLDSGAESDDLEPGR TVNLPLWYIKELKVNNAYFTVAVPDIYRNVHKAVCEAETTHIELGRLHPY FYEFGRYLTPYDRNHVIGRIIFETLRQRVRHLLDISKSDGQAAKAEHRLD NIEAKLHEAGVRTNSQYIEWLQMTGNKIRTSELVEEHQKKRRRADRSDDE GDALPNSKRATL*
Translation from 81 to 719
> AT18545.pep MNGMNYFPNYYSIEDIFVTQEKVECRVNTKLQRMGFLDSGAESDDLEPGR TVNLPLWYIKELKVNNAYFTVAVPDIYRNVHKAVCEAETTHIELGRLHPY FYEFGRYLTPYDRNHVIGRIIFETLRQRVRHLLDISKSDGQAAKAEHRLD NIEAKLHEAGVRTNSQYIEWLQMTGNKIRTSELVEEHQKKRRRADRSDDE GDALPNSKRATL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF19560-PA | 209 | GF19560-PA | 1..209 | 4..212 | 1074 | 93.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18923-PA | 212 | GG18923-PA | 1..212 | 1..212 | 1135 | 99.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12717-PA | 241 | GH12717-PA | 22..217 | 1..197 | 933 | 85.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Psf3-PC | 212 | CG2222-PC | 1..212 | 1..212 | 1119 | 100 | Plus |
Psf3-PB | 212 | CG2222-PB | 1..212 | 1..212 | 1119 | 100 | Plus |
Psf3-PA | 212 | CG2222-PA | 1..212 | 1..212 | 1119 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15393-PA | 213 | GI15393-PA | 2..194 | 4..197 | 941 | 86.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26783-PA | 208 | GL26783-PA | 1..208 | 4..212 | 1026 | 89.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15311-PA | 208 | GA15311-PA | 1..208 | 4..212 | 1026 | 89.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11316-PA | 212 | GM11316-PA | 1..212 | 1..212 | 1142 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16035-PA | 212 | GD16035-PA | 1..212 | 1..212 | 1137 | 99.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14790-PA | 222 | GJ14790-PA | 8..222 | 1..212 | 973 | 82.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK10262-PA | 213 | GK10262-PA | 2..213 | 3..212 | 941 | 81.6 | Plus |
Dwil\GK21656-PA | 206 | GK21656-PA | 1..205 | 4..205 | 882 | 78.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE15395-PA | 212 | GE15395-PA | 1..212 | 1..212 | 1144 | 100 | Plus |