Clone AT18606 Report

Search the DGRC for AT18606

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:186
Well:6
Vector:pOTB7
Associated Gene/TranscriptCG11322-RB
Protein status:AT18606.pep: gold
Preliminary Size:1350
Sequenced Size:1783

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11322 2002-01-01 Sim4 clustering to Release 2
CG11322 2003-01-01 Sim4 clustering to Release 3
CG11322 2003-01-22 Blastp of sequenced clone
CG11322 2008-04-29 Release 5.5 accounting
CG11322 2008-08-15 Release 5.9 accounting
CG11322 2008-12-18 5.12 accounting

Clone Sequence Records

AT18606.complete Sequence

1783 bp (1783 high quality bases) assembled on 2003-01-22

GenBank Submission: BT003637

> AT18606.complete
ATCAAACTAATTTCAAGTAATCCGTGCTCCAAACACCTCCGACTTTGGGA
AGCTGCACCAGAAATTCATCAAGGATACCTCTCCGATTTCTTCGATGATA
TGGACGGCAGCAGTCGTAGTTCCATGGATACCGACATGGAAATACAGAAG
TTGCCAGTGAAACGGCACTTGCCGGTGACCAAAGGCCATGGGTGTGTTAA
AAATAAGTGCCGCCGAAATCTAGACGAGATGTCCATCCAACAGTTTTCCG
ACTCATCCTCTCAGTCGGAGGGCGATGGCGAGGAGGACTCCAATGATGCC
GACGACGAGGAGTATCAGCAGCCCGAGTGGACGGGTCGCAAAAGGCCGCC
GCTGGTCTATCTCGAGTTGGGCGATAAAATCATTATCGTTAGGAACGAGC
CACAGCCCAACGTCAAGCTGGAAGACGATGTGCAACTTAAAACGAAGATG
CACAAATTTTTGGGTCTGATACCATCACGCCGCAAGCTCTACAATCCTGC
GGTGGTTTACGATATGAAGCCGGAGGATATTGAGAATATCAATTGTGTCG
TCAATTCATCCCATGCGTCCGCAGAGCCATTTACTCCATCAGCCGAGCAA
CCAATTCGTCCGAAAACAATGATGACATCCACTTGGTCAAAGCTTAATTT
GTCGAATATCGATGAACCGACCCCTGAGGAGAGCCAGGCTAAAAGCAAAA
ATGACTTTGAGCTCTGGTCCATTGCATTCTCCTTTGATCAGTGCACCCCG
GACTTGCATAAGGAGCCCATTGATCTTATCGATTTACCCAACGAAGAGCA
GTTGGCCGCCAACTGCCGACGTCACAAGAGCAGTGTGCCATGCCTGGAGC
GGCATCCAAAGTTCTACGGATTCGTTCGTTCGCTCAGCCCTTCGATTTCG
CTCAATATGTGCCATCCACTGGCGCTCACCTACAGGCAAAACAATTTCAA
AATCTGCAAGGTGGCACTGGCCAAAGTGCTGTTCAACATCTTCAACCACG
CGATCTTCCACTGTGGCCTTCAGGTGCCCATTGTTTGGAAGCACGCAATG
CACACGCGATGCACATGCCAGCTGACCGTCGATGCCCATGGTAAGCGCAG
AGCCAAGATTCTACTTCTGCGGAGTATAAAGACTACGGCGGAGCTAATCC
GCTGCCTGCTGCACGAGATGTGCCACGTGGCGGCATTTGTGTTCAATCGG
GAGTTGGGTCACGGCGACAATTGCCGCAGGTGGGCCTACCAGGCGAAGAT
GGCCCTGCCGGAGGCACCCACCATCGAGGACAACTGCATAGATAGCTTCA
AGTACACCTGCACTATGTGCACCCGATGCTCCTACGGCGTGGCCGACTTG
AGCATGCAGAACCTACGTTGCTACTACTGCCAGTTCGAGGTGAGCGTGAA
GAACGTTTGGAAGTCAGAGATGTACGATTGGACCCGGTCAGATCCGACGA
TGACACCGTTCAAGTGCTTCATTTGGGACAGGTACTTGCAGCTGGGCGAG
CAGGGAGCCAACACGCACTCCACGAATATGGCGTTGCTCAACGAGGAGTT
CATGAGACTGAACTCCACAATGGATTAGAATGCAGCGACTTTGCTGCTGG
CATAGACTTTTAAGTATATATTTTGTATAGGATAGGAGTGACTTAACCAC
AAAATCCCATGAGAATACTAATTCAAATCCCATAGTTTTGTTAACTTTTT
AAATTAATGTTTCTTTGTTTCTCTTGTTTCATGTTACCAGTTAAATAAAA
TACACAACTATTAATAAAAAAAAAAAAAAAAAA

AT18606.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:24:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG11322.a 1765 CG11322.a 1..1763 1..1764 8630 99.3 Plus
CG11322-RB 1765 CG11322-RB 1..1763 1..1764 8630 99.3 Plus
CG2694-RC 2733 CG2694-RC 1371..2152 760..1544 1515 79.7 Plus
CG2694-RC 2733 CG2694-RC 945..1093 349..497 325 81.2 Plus
CG2694-RC 2733 CG2694-RC 755..794 252..291 155 92.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:22:01
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6756914..6758676 1764..1 8695 99.7 Minus
chrX 22417052 chrX 2610049..2610522 760..1233 960 80.2 Plus
chrX 22417052 chrX 2610584..2610890 1235..1544 555 79.4 Plus
chrX 22417052 chrX 2609623..2609771 349..497 325 81.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:52:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:21:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6757866..6759628 1764..1 8620 99.4 Minus
X 23542271 X 2716233..2716706 760..1233 960 80.2 Plus
X 23542271 X 2716768..2717074 1235..1544 555 79.4 Plus
X 23542271 X 2715807..2715955 349..497 325 81.2 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:02:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6757866..6759628 1764..1 8630 99.3 Minus
X 23527363 X 2724529..2724804 958..1233 660 82.6 Plus
X 23527363 X 2724913..2725172 1285..1544 520 80 Plus
X 23527363 X 2724331..2724519 760..948 360 79.3 Plus
X 23527363 X 2723905..2724053 349..497 325 81.2 Plus
X 23527363 X 2723715..2723754 252..291 155 92.5 Plus
Blast to na_te.dros performed 2019-03-15 23:22:00
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 6083..6146 1729..1666 122 65.6 Minus

AT18606.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:22:56 Download gff for AT18606.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6756912..6758676 1..1765 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:12:40 Download gff for AT18606.complete
Subject Subject Range Query Range Percent Splice Strand
CG11322-RB 1..1443 136..1578 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:55:20 Download gff for AT18606.complete
Subject Subject Range Query Range Percent Splice Strand
CG11322-RB 1..1443 136..1578 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:39:43 Download gff for AT18606.complete
Subject Subject Range Query Range Percent Splice Strand
CG11322-RB 1..1443 136..1578 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:46:20 Download gff for AT18606.complete
Subject Subject Range Query Range Percent Splice Strand
CG11322-RB 1..1443 136..1578 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:31:05 Download gff for AT18606.complete
Subject Subject Range Query Range Percent Splice Strand
CG11322-RB 1..1443 136..1578 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:10:38 Download gff for AT18606.complete
Subject Subject Range Query Range Percent Splice Strand
CG11322-RB 1..1763 1..1765 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:55:19 Download gff for AT18606.complete
Subject Subject Range Query Range Percent Splice Strand
CG11322-RB 1..1763 1..1765 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:39:43 Download gff for AT18606.complete
Subject Subject Range Query Range Percent Splice Strand
CG11322-RB 1..1763 1..1765 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:46:20 Download gff for AT18606.complete
Subject Subject Range Query Range Percent Splice Strand
CG11322-RB 1..1763 1..1765 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:31:05 Download gff for AT18606.complete
Subject Subject Range Query Range Percent Splice Strand
CG11322-RB 1..1763 1..1765 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:22:56 Download gff for AT18606.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6757864..6759628 1..1765 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:22:56 Download gff for AT18606.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6757864..6759628 1..1765 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:22:56 Download gff for AT18606.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6757864..6759628 1..1765 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:39:43 Download gff for AT18606.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6757864..6759628 1..1765 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:17:26 Download gff for AT18606.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6757864..6759628 1..1765 99   Minus

AT18606.pep Sequence

Translation from 99 to 1577

> AT18606.pep
MDGSSRSSMDTDMEIQKLPVKRHLPVTKGHGCVKNKCRRNLDEMSIQQFS
DSSSQSEGDGEEDSNDADDEEYQQPEWTGRKRPPLVYLELGDKIIIVRNE
PQPNVKLEDDVQLKTKMHKFLGLIPSRRKLYNPAVVYDMKPEDIENINCV
VNSSHASAEPFTPSAEQPIRPKTMMTSTWSKLNLSNIDEPTPEESQAKSK
NDFELWSIAFSFDQCTPDLHKEPIDLIDLPNEEQLAANCRRHKSSVPCLE
RHPKFYGFVRSLSPSISLNMCHPLALTYRQNNFKICKVALAKVLFNIFNH
AIFHCGLQVPIVWKHAMHTRCTCQLTVDAHGKRRAKILLLRSIKTTAELI
RCLLHEMCHVAAFVFNRELGHGDNCRRWAYQAKMALPEAPTIEDNCIDSF
KYTCTMCTRCSYGVADLSMQNLRCYYCQFEVSVKNVWKSEMYDWTRSDPT
MTPFKCFIWDRYLQLGEQGANTHSTNMALLNEEFMRLNSTMD*

AT18606.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:29:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22450-PA 739 GF22450-PA 245..726 47..487 1050 45.8 Plus
Dana\GF21076-PA 1018 GF21076-PA 759..940 257..433 227 32.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:29:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18623-PA 807 GG18623-PA 269..807 2..492 1555 58.3 Plus
Dere\GG12677-PA 1012 GG12677-PA 754..988 257..486 249 30.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:29:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12779-PA 627 GH12779-PA 221..614 85..481 728 38.3 Plus
Dgri\GH17850-PA 1069 GH17850-PA 802..977 257..427 258 37.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG11322-PB 480 CG11322-PB 1..480 13..492 2604 100 Plus
CG2694-PD 822 CG2694-PD 279..822 4..492 1437 55.9 Plus
CG2694-PB 673 CG2694-PB 130..673 4..492 1437 55.9 Plus
CG2694-PA 825 CG2694-PA 282..825 4..492 1437 55.9 Plus
CG14814-PD 1030 CG14814-PD 542..950 40..433 259 24.6 Plus
CG14814-PA 1030 CG14814-PA 542..950 40..433 259 24.6 Plus
CG14814-PB 1052 CG14814-PB 564..972 40..433 259 24.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:29:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15872-PA 661 GI15872-PA 256..648 85..481 715 38.6 Plus
Dmoj\GI10114-PA 436 GI10114-PA 35..430 85..488 592 36.1 Plus
Dmoj\GI10990-PA 1076 GI10990-PA 818..1058 257..491 250 29.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:29:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19915-PA 633 GL19915-PA 162..633 49..490 969 43.4 Plus
Dper\GL20218-PA 1051 GL20218-PA 797..1037 257..492 249 31 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:29:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15433-PA 565 GA15433-PA 94..565 49..490 958 43.2 Plus
Dpse\GA13267-PA 1053 GA13267-PA 799..1039 257..492 251 31 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:29:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13858-PA 493 GM13858-PA 1..492 1..490 2182 85 Plus
Dsec\GM19243-PA 814 GM19243-PA 272..814 3..492 1407 53.1 Plus
Dsec\GM18949-PA 1034 GM18949-PA 754..954 236..433 259 32.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:29:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22544-PA 489 GD22544-PA 1..488 1..490 2153 84.4 Plus
Dsim\GD24625-PA 672 GD24625-PA 486..592 333..433 167 37 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:29:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18519-PA 697 GJ18519-PA 289..684 85..481 734 37.5 Plus
Dvir\GJ23336-PA 405 GJ23336-PA 16..402 85..487 620 36.4 Plus
Dvir\GJ19102-PA 1065 GJ19102-PA 797..973 257..428 260 36.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:29:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24908-PA 704 GK24908-PA 235..700 60..486 811 38.4 Plus
Dwil\GK19091-PA 380 GK19091-PA 22..373 124..486 544 36.1 Plus
Dwil\GK19794-PA 1039 GK19794-PA 775..957 256..433 253 34.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:29:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16276-PA 808 GE16276-PA 267..806 9..489 1601 62.3 Plus
Dyak\GE18406-PA 460 GE18406-PA 1..456 13..490 1461 59.1 Plus
Dyak\GE16507-PA 1024 GE16507-PA 762..944 256..433 252 33 Plus

AT18606.hyp Sequence

Translation from 99 to 1577

> AT18606.hyp
MNDSSRSSMDTDMEIQKLPVKRHLPVTKGHGCVKNKCRRNLDEMSIQQFS
DSSSQSEGDGEEDSNDADDEEYQQPEWTGRKRPPLVYLELGDKIIIVRNE
PQPNVKLEDDVQLKTKMHKFLGLIPSRRKLYNPAVVYDMKPEDIENINCV
VNSSHASAEPFTPSAEQPIRPKTMMTSTWSKLNLSNIDEPTPEESQAKSK
NDFELWSIAFSFDQCTPDLHKEPIDLIDLPNEEQLAANCRRHKSSVPCLE
RHPKFYGFVRSLSPSISLNMCHPLALTYRQNNFKICKVALAKVLFNIFNH
AIFHCGLQVPIVWKHAMHTRCTCQLTVDAHGKRRAKILLLRSIKTTAELI
RCLLHEMCHVAAFVFNRELGHGDNCRRWAYQAKMALPEAPTIEDNCIDSF
KYTCTMCTRCSYGVADLSMQNLRCYYCQFEVSVKNVWKSEMYDWTRSDPT
MTPFKCFIWDRYLQLGEQGANTHSTNMALLNEEFMRLNSTMD*

AT18606.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:04:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG11322-PB 480 CG11322-PB 1..480 13..492 2604 100 Plus
CG2694-PB 673 CG2694-PB 130..673 4..492 1437 55.9 Plus
CG2694-PD 822 CG2694-PD 279..822 4..492 1437 55.9 Plus
CG2694-PA 825 CG2694-PA 282..825 4..492 1437 55.9 Plus
CG14814-PD 1030 CG14814-PD 542..950 40..433 259 24.6 Plus